
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/417028/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/CESC-TP/3349247/CESC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=50, in cluster file=126, common to both=42
[1] 52 42
[1] "Amp Peak  1(1q21.3)"
[1] 3
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           27                            15 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           27                            15 
[1] "Amp Peak  2(1q44)"
[1] 3
      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                         25                          17 
      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                         25                          17 
[1] "Amp Peak  3(2p24.3)"
[1] 3
      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                           13                            29 
      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                           13                            29 
[1] "Amp Peak  4(2q32.3)"
[1] 3
      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                            6                            36 
      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                            6                            36 
[1] "Amp Peak  5(3q26.2)"
[1] 3
      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                           32                            10 
      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                           32                            10 
[1] "Amp Peak  6(3q28)"
[1] 3
      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                         31                          11 
      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                         31                          11 
[1] "Amp Peak  7(4q12)"
[1] 3
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                          5                          37 
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                          5                          37 
[1] "Amp Peak  8(6p21.33)"
[1] 3
      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                            12                             30 
      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                            12                             30 
[1] "Amp Peak  9(6q12)"
[1] 3
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                          6                          36 
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                          6                          36 
[1] "Amp Peak 10(8q24.21)"
[1] 3
      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                            17                             25 
      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                            17                             25 
[1] "Amp Peak 11(8q24.21)"
[1] 3
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                            17                             25 
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                            17                             25 
[1] "Amp Peak 12(9p24.1)"
[1] 3
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                            7                            35 
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                            7                            35 
[1] "Amp Peak 13(11q13.3)"
[1] 3
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                             4                             38 
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                             4                             38 
[1] "Amp Peak 14(11q22.1)"
[1] 3
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                             9                             33 
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                             9                             33 
[1] "Amp Peak 15(13q22.1)"
[1] 3
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                             4                             38 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                             4                             38 
[1] "Amp Peak 16(14q24.1)"
[1] 3
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                             9                             33 
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                             9                             33 
[1] "Amp Peak 17(15q26.3)"
[1] 3
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                            10                             32 
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                            10                             32 
[1] "Amp Peak 18(16p13.2)"
[1] 3
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                            10                             32 
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                            10                             32 
[1] "Amp Peak 19(16p13.13)"
[1] 3
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                             10                              32 
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                             10                              32 
[1] "Amp Peak 20(17q12)"
[1] 3
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                           5                           37 
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                           5                           37 
[1] "Amp Peak 21(17q25.1)"
[1] 3
      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                            12                             30 
      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                            12                             30 
[1] "Amp Peak 22(19q13.31)"
[1] 3
      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                             14                              28 
      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                             14                              28 
[1] "Amp Peak 23(20q11.21)"
[1] 3
      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                             21                              21 
      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                             21                              21 
[1] "Amp Peak 24(Xq28)"
[1] 3
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                          8                          34 
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                          8                          34 
[1] "Del Peak  1(1p36.23)"
[1] 3
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                             7                             35 
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                             7                             35 
[1] "Del Peak  2(1p13.1)"
[1] 3
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                            7                            35 
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                            7                            35 
[1] "Del Peak  3(2q22.1)"
[1] 3
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                            6                            36 
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                            6                            36 
[1] "Del Peak  4(2q37.1)"
[1] 3
      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                           19                            23 
      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                           19                            23 
[1] "Del Peak  5(3p11.1)"
[1] 3
      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                           21                            21 
      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                           21                            21 
[1] "Del Peak  6(4q22.1)"
[1] 3
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                           11                            31 
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                           11                            31 
[1] "Del Peak  7(4q35.2)"
[1] 3
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                           15                            27 
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                           15                            27 
[1] "Del Peak  8(5q14.3)"
[1] 3
      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                           18                            24 
      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                           18                            24 
[1] "Del Peak  9(6p24.3)"
[1] 3
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                            7                            35 
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                            7                            35 
[1] "Del Peak 10(6p12.1)"
[1] 3
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            3                            39 
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            3                            39 
[1] "Del Peak 11(6q26)"
[1] 3
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                         13                          29 
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                         13                          29 
[1] "Del Peak 12(7q34)"
[1] 3
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                          9                          33 
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                          9                          33 
[1] "Del Peak 13(10q23.31)"
[1] 3
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             10                              32 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             10                              32 
[1] "Del Peak 14(10q26.3)"
[1] 3
      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                             9                             33 
      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                             9                             33 
[1] "Del Peak 15(11p15.1)"
[1] 3
      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                            15                             27 
      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                            15                             27 
[1] "Del Peak 16(11q25)"
[1] 3
      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                          28                           14 
      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                          28                           14 
[1] "Del Peak 17(13q13.3)"
[1] 3
      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                            16                             26 
      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                            16                             26 
[1] "Del Peak 18(14q32.31)"
[1] 3
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                              4                              38 
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                              4                              38 
[1] "Del Peak 19(15q15.1)"
[1] 3
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                             8                             34 
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                             8                             34 
[1] "Del Peak 20(16q11.2)"
[1] 3
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                             5                             37 
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                             5                             37 
[1] "Del Peak 21(16q23.1)"
[1] 3
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                             6                             36 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                             6                             36 
[1] "Del Peak 22(17p12)"
[1] 3
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          13                           29 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          13                           29 
[1] "Del Peak 23(17q25.3)"
[1] 3
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             9                             33 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             9                             33 
[1] "Del Peak 24(19p13.3)"
[1] 3
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            11                             31 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            11                             31 
[1] "Del Peak 25(20p12.1)"
[1] 3
      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                             7                             35 
      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                             7                             35 
[1] "Del Peak 26(21q21.1)"
[1] 3
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                            11                             31 
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                            11                             31 
[1] "Del Peak 27(Xp11.3)"
[1] 3
      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                           14                            28 
      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                           14                            28 
[1] "Del Peak 28(Xq21.33)"
[1] 3
      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                            11                             31 
      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                            11                             31 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "RADIATIONS.RADIATION.REGIMENINDICATION"
[11] "NUMBERPACKYEARSSMOKED"                 
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "NUMBER.OF.LYMPH.NODES"                 
[15] "TUMOR.STAGECODE"                       
[16] "NEOPLASM.DISEASESTAGE"                 
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 42 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
        1505          925         1112         5385           NA           NA 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
        1616           NA           NA           NA         2382         2155 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
        1289           NA           81         2127         2892          183 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
           8           53           40           25           19           20 
TCGA-EA-A43B TCGA-EK-A2PI TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
          54           NA          178          241          211           37 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
          37           30           66            2           31           44 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
          48           24          106          773           NA          168 
Variable 1:'AGE':	nDistinctValues=30,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=34,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'NUMBERPACKYEARSSMOKED':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGECODE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "RADIATIONS.RADIATION.REGIMENINDICATION"
[3] "NUMBERPACKYEARSSMOKED"                 
[4] "DISTANT.METASTASIS"                    
[5] "LYMPH.NODE.METASTASIS"                 
[6] "NUMBER.OF.LYMPH.NODES"                 
[7] "TUMOR.STAGECODE"                       
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 T1B T1B1 T1B2  T2A T2A1 T2A2  T2B  T3B 
   6   14    4    2    3    2    6    1 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 42 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=30, binary=FALSE, numeric=TRUE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=10, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=4, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1q21.3)
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) CNV       23  3
  AMP PEAK  1(1Q21.3) WILD-TYPE 11  4
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           26                            15 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                            3                             4 
$`AMP PEAK  1(1Q21.3) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04         5.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
       35.61         2.43        78.31        70.85        42.38         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       69.93         6.02         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI 
        0.66         1.78         6.94         1.22         2.17         1.45 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EX-A1H5 
       67.46        40.93        36.76        95.08         0.26         5.85 
TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        7.92         1.22         0.99         0.07         1.02         1.58 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HM-A3JJ 
        0.79         3.48        21.67 

      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.62                          0.07 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                       177.04                         95.08 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                         5.77                          3.48 
[1] "0.6 - 177.0 (5.8)" "0.1 - 95.1 (3.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
      "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
      "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
      "AMP PEAK  1(1Q21.3) CNV" 
[1] "hr=" "2.8"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV          9   18
  AMP PEAK  1(1Q21.3) WILD-TYPE    4   11
     clus
vv    AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                        9                             4
  YES                      18                            11
D1V4, continuous
D1V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         18    6
  AMP PEAK  1(1Q21.3) WILD-TYPE    5    8
    clus
vv   AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                      18                             5
  MX                       6                             8
D1V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         16    8
  AMP PEAK  1(1Q21.3) WILD-TYPE    8    6
    clus
vv   AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  N0                      16                             8
  N1                       8                             6
D1V7, continuous
D1V8, continuous

Clustering(2) Variable = Amp Peak  2(1q44)
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1Q44) CNV       21  3
  AMP PEAK  2(1Q44) WILD-TYPE 13  4
      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                         24                          17 
      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                          3                           4 
$`AMP PEAK  2(1Q44) CNV`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        36.56       177.04         5.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
        2.43        78.31        70.85        42.38         2.66        69.93 
TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        6.02         1.74         1.32         0.62         0.66         1.78 
TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        6.94         1.22         2.17         1.45        25.41         5.52 

$`AMP PEAK  2(1Q44) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT 
       30.41        67.46        40.93        36.76        95.08         0.26 
TCGA-EA-A3HS TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY 
        0.82         5.85         7.92         1.22         0.99         0.07 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HM-A3JJ 
        1.02         1.58         0.79         3.48        21.67 

      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                       0.62                        0.07 
      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                     177.04                       95.08 
      AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE 
                       5.77                        3.48 
[1] "0.6 - 177.0 (5.8)" "0.1 - 95.1 (3.5)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "AMP PEAK  2(1Q44) CNV" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "AMP PEAK  2(1Q44) CNV" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "AMP PEAK  2(1Q44) CNV"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  2(1Q44) WILD-TYPE"       "AMP PEAK  2(1Q44) CNV" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  2(1Q44) WILD-TYPE" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
      "AMP PEAK  2(1Q44) CNV" "AMP PEAK  2(1Q44) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "AMP PEAK  2(1Q44) CNV" 
[1] "hr=" "2.6"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) CNV          9   16
  AMP PEAK  2(1Q44) WILD-TYPE    4   13
     clus
vv    AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE
  NO                      9                           4
  YES                    16                          13
D2V4, continuous
D2V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) CNV         16    6
  AMP PEAK  2(1Q44) WILD-TYPE    7    8
    clus
vv   AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE
  M0                    16                           7
  MX                     6                           8
D2V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q44) CNV         14    8
  AMP PEAK  2(1Q44) WILD-TYPE   10    6
    clus
vv   AMP PEAK  2(1Q44) CNV AMP PEAK  2(1Q44) WILD-TYPE
  N0                    14                          10
  N1                     8                           6
D2V7, continuous
D2V8, continuous

Clustering(3) Variable = Amp Peak  3(2p24.3)
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(2P24.3) CNV       10  2
  AMP PEAK  3(2P24.3) WILD-TYPE 24  5
      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                           12                            29 
      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                            2                             5 
$`AMP PEAK  3(2P24.3) CNV`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A439 
       30.41         5.46        35.61         6.02         1.32         0.66 
TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        1.78         7.92         6.94         1.22         0.99         0.07 

$`AMP PEAK  3(2P24.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        36.56       177.04        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       69.93        95.08         0.26         1.74         0.82         0.62 
TCGA-EX-A1H5 TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        5.85         1.22         2.17         1.02         1.45         1.58 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.79         3.48        25.41        21.67         5.52 

      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                         0.07                          0.26 
      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                        35.61                        177.04 
      AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE 
                         3.62                          5.85 
[1] "0.1 - 35.6 (3.6)"  "0.3 - 177.0 (5.8)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "AMP PEAK  3(2P24.3) CNV"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "AMP PEAK  3(2P24.3) CNV"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "AMP PEAK  3(2P24.3) CNV"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(2P24.3) WILD-TYPE"       "AMP PEAK  3(2P24.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "AMP PEAK  3(2P24.3) CNV" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK  3(2P24.3) WILD-TYPE" "AMP PEAK  3(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  3(2P24.3) WILD-TYPE" 
[1] "hr=" "5.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(2P24.3) CNV          3   10
  AMP PEAK  3(2P24.3) WILD-TYPE   10   19
     clus
vv    AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE
  NO                        3                            10
  YES                      10                            19
D3V4, continuous
D3V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(2P24.3) CNV          7    3
  AMP PEAK  3(2P24.3) WILD-TYPE   16   11
    clus
vv   AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE
  M0                       7                            16
  MX                       3                            11
D3V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(2P24.3) CNV          8    3
  AMP PEAK  3(2P24.3) WILD-TYPE   16   11
    clus
vv   AMP PEAK  3(2P24.3) CNV AMP PEAK  3(2P24.3) WILD-TYPE
  N0                       8                            16
  N1                       3                            11
D3V7, continuous
D3V8, continuous

Clustering(4) Variable = Amp Peak  4(2q32.3)
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(2Q32.3) CNV        5  0
  AMP PEAK  4(2Q32.3) WILD-TYPE 29  7
      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                            5                            36 
      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                            0                             7 
$`AMP PEAK  4(2Q32.3) CNV`
TCGA-BI-A0VS TCGA-C5-A2LY TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A3NI 
       30.41        78.31         0.66         1.78         1.45 

$`AMP PEAK  4(2Q32.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        40.93        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.02         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        1.32         0.82         0.62         5.85         7.92         6.94 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.58         0.79         3.48        25.41        21.67         5.52 

      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                         0.66                          0.07 
      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                        78.31                        177.04 
      AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE 
                        1.780                         5.685 
[1] "0.7 - 78.3 (1.8)"  "0.1 - 177.0 (5.7)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  4(2Q32.3) WILD-TYPE"       "AMP PEAK  4(2Q32.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  4(2Q32.3) WILD-TYPE"       "AMP PEAK  4(2Q32.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  4(2Q32.3) WILD-TYPE"       "AMP PEAK  4(2Q32.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  4(2Q32.3) WILD-TYPE"       "AMP PEAK  4(2Q32.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  4(2Q32.3) WILD-TYPE"       "AMP PEAK  4(2Q32.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  4(2Q32.3) WILD-TYPE"       "AMP PEAK  4(2Q32.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  4(2Q32.3) CNV" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK  4(2Q32.3) WILD-TYPE" "AMP PEAK  4(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  4(2Q32.3) WILD-TYPE" 
[1] "hr="     "2.2e+08"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2Q32.3) CNV          1    5
  AMP PEAK  4(2Q32.3) WILD-TYPE   12   24
     clus
vv    AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE
  NO                        1                            12
  YES                       5                            24
D4V4, continuous
D4V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2Q32.3) CNV          4    1
  AMP PEAK  4(2Q32.3) WILD-TYPE   19   13
    clus
vv   AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE
  M0                       4                            19
  MX                       1                            13
D4V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2Q32.3) CNV          4    1
  AMP PEAK  4(2Q32.3) WILD-TYPE   20   13
    clus
vv   AMP PEAK  4(2Q32.3) CNV AMP PEAK  4(2Q32.3) WILD-TYPE
  N0                       4                            20
  N1                       1                            13
D4V7, continuous
D4V8, continuous

Clustering(5) Variable = Amp Peak  5(3q26.2)
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(3Q26.2) CNV       25  6
  AMP PEAK  5(3Q26.2) WILD-TYPE  9  1
      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                           31                            10 
      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                            6                             1 
$`AMP PEAK  5(3Q26.2) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       35.61         2.43        40.93        78.31        70.85        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.02         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.32         0.82         0.62         0.66         5.85         6.94 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.22         1.45         0.79         3.48        25.41        21.67 
TCGA-HM-A3JK 
        5.52 

$`AMP PEAK  5(3Q26.2) WILD-TYPE`
TCGA-C5-A1BN TCGA-DR-A0ZM TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG 
        5.46        42.38         1.78         7.92         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        2.17         0.07         1.02         1.58 

      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                         0.26                          0.07 
      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                       177.04                         42.38 
      AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE 
                         6.94                          1.68 
[1] "0.3 - 177.0 (6.9)" "0.1 - 42.4 (1.7)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  5(3Q26.2) WILD-TYPE" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  5(3Q26.2) WILD-TYPE" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  5(3Q26.2) CNV" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-HM-A3JK 
      "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  5(3Q26.2) WILD-TYPE" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  5(3Q26.2) WILD-TYPE" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  5(3Q26.2) CNV" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-HM-A3JK 
      "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  5(3Q26.2) WILD-TYPE"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  5(3Q26.2) WILD-TYPE" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  5(3Q26.2) WILD-TYPE" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "AMP PEAK  5(3Q26.2) CNV" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "AMP PEAK  5(3Q26.2) CNV"       "AMP PEAK  5(3Q26.2) CNV" 
                   TCGA-HM-A3JK 
      "AMP PEAK  5(3Q26.2) CNV" 
[1] "hr=" "1.9"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(3Q26.2) CNV         11   21
  AMP PEAK  5(3Q26.2) WILD-TYPE    2    8
     clus
vv    AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE
  NO                       11                             2
  YES                      21                             8
D5V4, continuous
D5V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(3Q26.2) CNV         20    9
  AMP PEAK  5(3Q26.2) WILD-TYPE    3    5
    clus
vv   AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE
  M0                      20                             3
  MX                       9                             5
D5V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(3Q26.2) CNV         19   10
  AMP PEAK  5(3Q26.2) WILD-TYPE    5    4
    clus
vv   AMP PEAK  5(3Q26.2) CNV AMP PEAK  5(3Q26.2) WILD-TYPE
  N0                      19                             5
  N1                      10                             4
D5V7, continuous
D5V8, continuous

Clustering(6) Variable = Amp Peak  6(3q28)
D6V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  6(3Q28) CNV       25  5
  AMP PEAK  6(3Q28) WILD-TYPE  9  2
      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                         30                          11 
      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                          5                           2 
$`AMP PEAK  6(3Q28) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       35.61         2.43        40.93        78.31        70.85        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.02         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.32         0.82         0.62         0.66         5.85         6.94 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.22         1.45         0.79         3.48        25.41         5.52 

$`AMP PEAK  6(3Q28) WILD-TYPE`
TCGA-C5-A1BN TCGA-DR-A0ZM TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG 
        5.46        42.38         1.78         7.92         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-HM-A3JJ 
        2.17         0.07         1.02         1.58        21.67 

      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                       0.26                        0.07 
      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                     177.04                       42.38 
      AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE 
                       6.48                        1.78 
[1] "0.3 - 177.0 (6.5)" "0.1 - 42.4 (1.8)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  6(3Q28) WILD-TYPE" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  6(3Q28) WILD-TYPE" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK  6(3Q28) CNV" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
      "AMP PEAK  6(3Q28) CNV" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "AMP PEAK  6(3Q28) CNV" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  6(3Q28) WILD-TYPE" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  6(3Q28) WILD-TYPE" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK  6(3Q28) CNV" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
      "AMP PEAK  6(3Q28) CNV" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "AMP PEAK  6(3Q28) CNV" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  6(3Q28) WILD-TYPE"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  6(3Q28) WILD-TYPE" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  6(3Q28) WILD-TYPE" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK  6(3Q28) CNV" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
      "AMP PEAK  6(3Q28) CNV"       "AMP PEAK  6(3Q28) CNV" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
      "AMP PEAK  6(3Q28) CNV" "AMP PEAK  6(3Q28) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "AMP PEAK  6(3Q28) CNV" 
[1] "hr=" "3.7"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(3Q28) CNV         10   21
  AMP PEAK  6(3Q28) WILD-TYPE    3    8
     clus
vv    AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE
  NO                     10                           3
  YES                    21                           8
D6V4, continuous
D6V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(3Q28) CNV         20    8
  AMP PEAK  6(3Q28) WILD-TYPE    3    6
    clus
vv   AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE
  M0                    20                           3
  MX                     8                           6
D6V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(3Q28) CNV         19    9
  AMP PEAK  6(3Q28) WILD-TYPE    5    5
    clus
vv   AMP PEAK  6(3Q28) CNV AMP PEAK  6(3Q28) WILD-TYPE
  N0                    19                           5
  N1                     9                           5
D6V7, continuous
D6V8, continuous

Clustering(7) Variable = Amp Peak  7(4q12)
D7V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  7(4Q12) CNV        3  1
  AMP PEAK  7(4Q12) WILD-TYPE 31  6
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                          4                          37 
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                          1                           6 
$`AMP PEAK  7(4Q12) CNV`
TCGA-C5-A1MF TCGA-C5-A1MN TCGA-DS-A3LQ TCGA-FU-A23K 
       53.13        40.93         6.02         1.22 

$`AMP PEAK  7(4Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        69.93        95.08         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.82         0.62         0.66         1.78         5.85         7.92 
TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.94         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         1.58         0.79         3.48        25.41        21.67 
TCGA-HM-A3JK 
        5.52 

      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                       1.22                        0.07 
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                      53.13                      177.04 
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                     23.475                       5.460 
[1] "1.2 - 53.1 (23.5)" "0.1 - 177.0 (5.5)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  7(4Q12) CNV" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK  7(4Q12) WILD-TYPE"       "AMP PEAK  7(4Q12) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  7(4Q12) WILD-TYPE"       "AMP PEAK  7(4Q12) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
      "AMP PEAK  7(4Q12) CNV" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  7(4Q12) CNV" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK  7(4Q12) WILD-TYPE"       "AMP PEAK  7(4Q12) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  7(4Q12) WILD-TYPE"       "AMP PEAK  7(4Q12) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
      "AMP PEAK  7(4Q12) CNV" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK  7(4Q12) CNV" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK  7(4Q12) WILD-TYPE"       "AMP PEAK  7(4Q12) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  7(4Q12) WILD-TYPE"       "AMP PEAK  7(4Q12) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
      "AMP PEAK  7(4Q12) CNV" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  7(4Q12) WILD-TYPE" 
[1] "hr=" "1.1"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(4Q12) CNV          3    2
  AMP PEAK  7(4Q12) WILD-TYPE   10   27
     clus
vv    AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE
  NO                      3                          10
  YES                     2                          27
D7V4, continuous
[1] "Remove cluster labels:" "AMP PEAK  7(4Q12) CNV" 
clus
      AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE 
                          2                          12 
                 TCGA-BI-A0VR                  TCGA-C5-A1BI 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1MI 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-EX-A1H5 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3TQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  7(4Q12) WILD-TYPE" "AMP PEAK  7(4Q12) WILD-TYPE" 
D7V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(4Q12) CNV          1    2
  AMP PEAK  7(4Q12) WILD-TYPE   22   12
    clus
vv   AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE
  M0                     1                          22
  MX                     2                          12
D7V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(4Q12) CNV          1    2
  AMP PEAK  7(4Q12) WILD-TYPE   23   12
    clus
vv   AMP PEAK  7(4Q12) CNV AMP PEAK  7(4Q12) WILD-TYPE
  N0                     1                          23
  N1                     2                          12
D7V7, continuous
D7V8, continuous

Clustering(8) Variable = Amp Peak  8(6p21.33)
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(6P21.33) CNV        9  2
  AMP PEAK  8(6P21.33) WILD-TYPE 25  5
      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                            11                             30 
      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                             2                              5 
$`AMP PEAK  8(6P21.33) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A2LY TCGA-DS-A0VM 
       49.48        30.41         5.46        35.61        78.31        69.93 
TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23K TCGA-FU-A23L TCGA-HG-A2PA 
        0.66         1.78         1.22         1.22        25.41 

$`AMP PEAK  8(6P21.33) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       36.56       177.04        67.46        53.13         2.43        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ 
       70.85        42.38        36.76         2.66        95.08         6.02 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 
        0.26         1.74         1.32         0.82         0.62         5.85 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        7.92         6.94         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.45         1.58         0.79         3.48        21.67         5.52 

      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                          0.66                           0.07 
      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                         78.31                         177.04 
      AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE 
                         25.41                           4.50 
[1] "0.7 - 78.3 (25.4)" "0.1 - 177.0 (4.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "AMP PEAK  8(6P21.33) CNV"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK  8(6P21.33) CNV"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "AMP PEAK  8(6P21.33) CNV"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK  8(6P21.33) CNV"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "AMP PEAK  8(6P21.33) CNV"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  8(6P21.33) WILD-TYPE"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK  8(6P21.33) CNV"       "AMP PEAK  8(6P21.33) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK  8(6P21.33) WILD-TYPE" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
      "AMP PEAK  8(6P21.33) CNV" "AMP PEAK  8(6P21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  8(6P21.33) WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(6P21.33) CNV          3    9
  AMP PEAK  8(6P21.33) WILD-TYPE   10   20
     clus
vv    AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE
  NO                         3                             10
  YES                        9                             20
D8V4, continuous
D8V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(6P21.33) CNV          8    2
  AMP PEAK  8(6P21.33) WILD-TYPE   15   12
    clus
vv   AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE
  M0                        8                             15
  MX                        2                             12
D8V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(6P21.33) CNV          6    4
  AMP PEAK  8(6P21.33) WILD-TYPE   18   10
    clus
vv   AMP PEAK  8(6P21.33) CNV AMP PEAK  8(6P21.33) WILD-TYPE
  N0                        6                             18
  N1                        4                             10
D8V7, continuous
D8V8, continuous

Clustering(9) Variable = Amp Peak  9(6q12)
D9V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  9(6Q12) CNV        5  1
  AMP PEAK  9(6Q12) WILD-TYPE 29  6
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                          6                          35 
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                          1                           6 
$`AMP PEAK  9(6Q12) CNV`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L 
       30.41        35.61         6.02         0.66         1.78         1.22 

$`AMP PEAK  9(6Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        69.93        95.08         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.82         0.62         5.85         7.92         6.94         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.99         2.17         0.07         1.02         1.45         1.58 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.79         3.48        25.41        21.67         5.52 

      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                       0.66                        0.07 
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                      35.61                      177.04 
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                       3.90                        5.52 
[1] "0.7 - 35.6 (3.9)"  "0.1 - 177.0 (5.5)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "AMP PEAK  9(6Q12) CNV" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "AMP PEAK  9(6Q12) CNV" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "AMP PEAK  9(6Q12) CNV" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  9(6Q12) WILD-TYPE"       "AMP PEAK  9(6Q12) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  9(6Q12) WILD-TYPE" 
[1] "hr=" "2.6"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q12) CNV          2    4
  AMP PEAK  9(6Q12) WILD-TYPE   11   25
     clus
vv    AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE
  NO                      2                          11
  YES                     4                          25
D9V4, continuous
[1] "Remove cluster labels:" "AMP PEAK  9(6Q12) CNV" 
clus
      AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE 
                          1                          13 
                 TCGA-BI-A0VR                  TCGA-C5-A1BI 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1MF 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-DR-A0ZM 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-FU-A2QG 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3EO                  TCGA-FU-A3HY 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3TQ                  TCGA-FU-A3WB 
"AMP PEAK  9(6Q12) WILD-TYPE" "AMP PEAK  9(6Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ 
"AMP PEAK  9(6Q12) WILD-TYPE" 
D9V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q12) CNV          5    1
  AMP PEAK  9(6Q12) WILD-TYPE   18   13
    clus
vv   AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE
  M0                     5                          18
  MX                     1                          13
D9V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q12) CNV          4    2
  AMP PEAK  9(6Q12) WILD-TYPE   20   12
    clus
vv   AMP PEAK  9(6Q12) CNV AMP PEAK  9(6Q12) WILD-TYPE
  N0                     4                          20
  N1                     2                          12
D9V7, continuous
D9V8, continuous

Clustering(10) Variable = Amp Peak 10(8q24.21)
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(8Q24.21) CNV       14  3
  AMP PEAK 10(8Q24.21) WILD-TYPE 20  4
      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                            17                             24 
      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                             3                              4 
$`AMP PEAK 10(8Q24.21) CNV`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04        67.46        53.13        35.61         2.43 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       70.85         2.66        69.93         6.02         0.26         1.74 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3YQ 
        1.22         1.22         0.07         1.45         3.48 

$`AMP PEAK 10(8Q24.21) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM 
       49.48        36.56         5.46        40.93        78.31        42.38 
TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
       36.76        95.08         1.32         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3EO 
        1.78         5.85         7.92         6.94         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.02         1.58         0.79        25.41        21.67         5.52 

      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                          0.07                           0.62 
      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                        177.04                          95.08 
      AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE 
                         3.480                          5.685 
[1] "0.1 - 177.0 (3.5)" "0.6 - 95.1 (5.7)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK 10(8Q24.21) CNV"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 10(8Q24.21) CNV" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 10(8Q24.21) WILD-TYPE"       "AMP PEAK 10(8Q24.21) CNV" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 10(8Q24.21) WILD-TYPE" "AMP PEAK 10(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 10(8Q24.21) WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q24.21) CNV          4   13
  AMP PEAK 10(8Q24.21) WILD-TYPE    9   16
     clus
vv    AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE
  NO                         4                              9
  YES                       13                             16
D10V4, continuous
D10V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q24.21) CNV          9    7
  AMP PEAK 10(8Q24.21) WILD-TYPE   14    7
    clus
vv   AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE
  M0                        9                             14
  MX                        7                              7
D10V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(8Q24.21) CNV         10    6
  AMP PEAK 10(8Q24.21) WILD-TYPE   14    8
    clus
vv   AMP PEAK 10(8Q24.21) CNV AMP PEAK 10(8Q24.21) WILD-TYPE
  N0                       10                             14
  N1                        6                              8
D10V7, continuous
D10V8, continuous

Clustering(11) Variable = Amp Peak 11(8q24.21)
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(8Q24.21) CNV       13  4
  AMP PEAK 11(8Q24.21) WILD-TYPE 21  3
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                            17                             24 
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                             4                              3 
$`AMP PEAK 11(8Q24.21) CNV`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04        67.46        53.13        35.61         2.43 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       36.76         2.66        69.93         6.02         0.26         1.74 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3YQ 
        1.22         1.22         0.07         1.45         3.48 

$`AMP PEAK 11(8Q24.21) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       49.48        36.56         5.46        40.93        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
       42.38        95.08         1.32         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3EO 
        1.78         5.85         7.92         6.94         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.02         1.58         0.79        25.41        21.67         5.52 

      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                          0.07                           0.62 
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                        177.04                          95.08 
      AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE 
                         3.480                          5.685 
[1] "0.1 - 177.0 (3.5)" "0.6 - 95.1 (5.7)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
      "AMP PEAK 11(8Q24.21) CNV"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 11(8Q24.21) CNV" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 11(8Q24.21) WILD-TYPE"       "AMP PEAK 11(8Q24.21) CNV" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 11(8Q24.21) WILD-TYPE" 
[1] "hr=" "1.7"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) CNV          4   13
  AMP PEAK 11(8Q24.21) WILD-TYPE    9   16
     clus
vv    AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE
  NO                         4                              9
  YES                       13                             16
D11V4, continuous
D11V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) CNV          9    7
  AMP PEAK 11(8Q24.21) WILD-TYPE   14    7
    clus
vv   AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE
  M0                        9                             14
  MX                        7                              7
D11V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) CNV          9    7
  AMP PEAK 11(8Q24.21) WILD-TYPE   15    7
    clus
vv   AMP PEAK 11(8Q24.21) CNV AMP PEAK 11(8Q24.21) WILD-TYPE
  N0                        9                             15
  N1                        7                              7
D11V7, continuous
D11V8, continuous

Clustering(12) Variable = Amp Peak 12(9p24.1)
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(9P24.1) CNV        7  0
  AMP PEAK 12(9P24.1) WILD-TYPE 27  7
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                            7                            34 
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                            0                             7 
$`AMP PEAK 12(9P24.1) CNV`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EX-A3L1 
       49.48       177.04        69.93         6.02         0.26         6.94 
TCGA-FU-A23K 
        1.22 

$`AMP PEAK 12(9P24.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       30.41        36.56         5.46        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        2.66        95.08         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23L TCGA-FU-A2QG 
        0.66         1.78         5.85         7.92         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB 
        2.17         0.07         1.02         1.45         1.58         0.79 
TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48        25.41        21.67         5.52 

      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                         0.26                          0.07 
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                       177.04                         95.08 
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                         6.94                          4.47 
[1] "0.3 - 177.0 (6.9)" "0.1 - 95.1 (4.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"AMP PEAK 12(9P24.1) WILD-TYPE"       "AMP PEAK 12(9P24.1) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
      "AMP PEAK 12(9P24.1) CNV" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 12(9P24.1) WILD-TYPE" 
[1] "hr="     "2.9e+08"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) CNV          1    6
  AMP PEAK 12(9P24.1) WILD-TYPE   12   23
     clus
vv    AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE
  NO                        1                            12
  YES                       6                            23
D12V4, continuous
[1] "Remove cluster labels:"  "AMP PEAK 12(9P24.1) CNV"
clus
      AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE 
                            1                            13 
                   TCGA-C5-A1BI                    TCGA-C5-A1BN 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-DR-A0ZM 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-FU-A2QG 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3EO                    TCGA-FU-A3HY 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TQ                    TCGA-FU-A3WB 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ 
"AMP PEAK 12(9P24.1) WILD-TYPE" 
D12V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) CNV          5    2
  AMP PEAK 12(9P24.1) WILD-TYPE   18   12
    clus
vv   AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE
  M0                       5                            18
  MX                       2                            12
D12V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) CNV          3    4
  AMP PEAK 12(9P24.1) WILD-TYPE   21   10
    clus
vv   AMP PEAK 12(9P24.1) CNV AMP PEAK 12(9P24.1) WILD-TYPE
  N0                       3                            21
  N1                       4                            10
D12V7, continuous
D12V8, continuous

Clustering(13) Variable = Amp Peak 13(11q13.3)
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(11Q13.3) CNV        2  1
  AMP PEAK 13(11Q13.3) WILD-TYPE 32  6
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                             3                             38 
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                             1                              6 
$`AMP PEAK 13(11Q13.3) CNV`
TCGA-C5-A1BN TCGA-C5-A1MF TCGA-EA-A1QT 
        5.46        53.13         0.26 

$`AMP PEAK 13(11Q13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        30.41        36.56       177.04        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        69.93        95.08         6.02         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.82         0.62         0.66         1.78         5.85         7.92 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.94         1.22         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA 
        1.02         1.45         1.58         0.79         3.48        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK 
       21.67         5.52 

      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                          0.26                           0.07 
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                         53.13                         177.04 
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                         5.460                          5.685 
[1] "0.3 - 53.1 (5.5)"  "0.1 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "AMP PEAK 13(11Q13.3) CNV" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" 
[1] "hr=" "2.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q13.3) CNV          2    2
  AMP PEAK 13(11Q13.3) WILD-TYPE   11   27
     clus
vv    AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE
  NO                         2                             11
  YES                        2                             27
D13V4, continuous
[1] "Remove cluster labels:"   "AMP PEAK 13(11Q13.3) CNV"
clus
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                             2                             12 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
D13V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q13.3) CNV          1    1
  AMP PEAK 13(11Q13.3) WILD-TYPE   22   13
    clus
vv   AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE
  M0                        1                             22
  MX                        1                             13
D13V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q13.3) CNV          2    0
  AMP PEAK 13(11Q13.3) WILD-TYPE   22   14
    clus
vv   AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE
  N0                        2                             22
  N1                        0                             14
D13V7, continuous
[1] "Remove cluster labels:"   "AMP PEAK 13(11Q13.3) CNV"
clus
      AMP PEAK 13(11Q13.3) CNV AMP PEAK 13(11Q13.3) WILD-TYPE 
                             2                             34 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1M5 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A43B 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-FU-A23K 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23L                     TCGA-FU-A2QG 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HZ                     TCGA-FU-A3NI 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TQ                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 13(11Q13.3) WILD-TYPE" "AMP PEAK 13(11Q13.3) WILD-TYPE" 
D13V8, continuous

Clustering(14) Variable = Amp Peak 14(11q22.1)
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(11Q22.1) CNV        6  3
  AMP PEAK 14(11Q22.1) WILD-TYPE 28  4
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                             9                             32 
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                             3                              4 
$`AMP PEAK 14(11Q22.1) CNV`
TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
      177.04         5.46        78.31        70.85        36.76         2.66 
TCGA-EA-A43B TCGA-EX-A3L1 TCGA-HM-A3JJ 
        1.78         6.94        21.67 

$`AMP PEAK 14(11Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41        36.56        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
        2.43        40.93        42.38        69.93        95.08         6.02 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        0.26         1.74         1.32         0.82         0.62         0.66 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        5.85         7.92         1.22         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.45         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                          1.78                           0.07 
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                        177.04                          95.08 
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                        21.670                          2.955 
[1] "1.8 - 177.0 (21.7)" "0.1 - 95.1 (3.0)"  
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
      "AMP PEAK 14(11Q22.1) CNV"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-HM-A3JK 
"AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
      "AMP PEAK 14(11Q22.1) CNV"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-HM-A3JK 
"AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
      "AMP PEAK 14(11Q22.1) CNV"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK 14(11Q22.1) CNV" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 14(11Q22.1) WILD-TYPE"       "AMP PEAK 14(11Q22.1) CNV" 
                    TCGA-HM-A3JK 
"AMP PEAK 14(11Q22.1) WILD-TYPE" 
[1] "hr=" "1.4"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q22.1) CNV          3    6
  AMP PEAK 14(11Q22.1) WILD-TYPE   10   23
     clus
vv    AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE
  NO                         3                             10
  YES                        6                             23
D14V4, continuous
[1] "Remove cluster labels:"   "AMP PEAK 14(11Q22.1) CNV"
clus
      AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE 
                             1                             13 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TQ                     TCGA-FU-A3WB 
"AMP PEAK 14(11Q22.1) WILD-TYPE" "AMP PEAK 14(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ 
"AMP PEAK 14(11Q22.1) WILD-TYPE" 
D14V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q22.1) CNV          6    2
  AMP PEAK 14(11Q22.1) WILD-TYPE   17   12
    clus
vv   AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE
  M0                        6                             17
  MX                        2                             12
D14V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(11Q22.1) CNV          6    2
  AMP PEAK 14(11Q22.1) WILD-TYPE   18   12
    clus
vv   AMP PEAK 14(11Q22.1) CNV AMP PEAK 14(11Q22.1) WILD-TYPE
  N0                        6                             18
  N1                        2                             12
D14V7, continuous
D14V8, continuous

Clustering(15) Variable = Amp Peak 15(13q22.1)
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(13Q22.1) CNV        3  1
  AMP PEAK 15(13Q22.1) WILD-TYPE 31  6
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                             4                             37 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                             1                              6 
$`AMP PEAK 15(13Q22.1) CNV`
TCGA-C5-A1BN TCGA-DS-A0VM TCGA-EA-A3HT TCGA-FU-A3HY 
        5.46        69.93         0.62         0.07 

$`AMP PEAK 15(13Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       36.76         2.66        95.08         6.02         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 
        1.32         0.82         0.66         1.78         5.85         7.92 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        6.94         1.22         1.22         0.99         2.17         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         1.58         0.79         3.48        25.41        21.67 
TCGA-HM-A3JK 
        5.52 

      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                          0.07                           0.26 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                         69.93                         177.04 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                          3.04                           5.85 
[1] "0.1 - 69.9 (3.0)"  "0.3 - 177.0 (5.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 15(13Q22.1) WILD-TYPE" 
[1] "hr=" "1.6"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV          1    3
  AMP PEAK 15(13Q22.1) WILD-TYPE   12   26
     clus
vv    AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  NO                         1                             12
  YES                        3                             26
D15V4, continuous
[1] "Remove cluster labels:"   "AMP PEAK 15(13Q22.1) CNV"
clus
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                             2                             12 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3TQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
D15V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV          2    1
  AMP PEAK 15(13Q22.1) WILD-TYPE   21   13
    clus
vv   AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  M0                        2                             21
  MX                        1                             13
D15V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV          1    2
  AMP PEAK 15(13Q22.1) WILD-TYPE   23   12
    clus
vv   AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  N0                        1                             23
  N1                        2                             12
D15V7, continuous
D15V8, continuous

Clustering(16) Variable = Amp Peak 16(14q24.1)
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(14Q24.1) CNV        7  1
  AMP PEAK 16(14Q24.1) WILD-TYPE 27  6
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                             8                             33 
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                             1                              6 
$`AMP PEAK 16(14Q24.1) CNV`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-EA-A3HQ TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A3L1 
       30.41        35.61         1.74         0.66         1.78         6.94 
TCGA-FU-A3HY TCGA-FU-A3NI 
        0.07         1.45 

$`AMP PEAK 16(14Q24.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR 
        2.66        69.93        95.08         6.02         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A23L 
        0.82         0.62         5.85         7.92         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.99         2.17         1.02         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
       25.41        21.67         5.52 

      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                          0.07                           0.26 
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                         35.61                         177.04 
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                          1.76                           5.85 
[1] "0.1 - 35.6 (1.8)"  "0.3 - 177.0 (5.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 16(14Q24.1) WILD-TYPE"       "AMP PEAK 16(14Q24.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 16(14Q24.1) CNV" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 16(14Q24.1) WILD-TYPE" 
[1] "hr=" "2.6"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(14Q24.1) CNV          1    8
  AMP PEAK 16(14Q24.1) WILD-TYPE   12   21
     clus
vv    AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE
  NO                         1                             12
  YES                        8                             21
D16V4, continuous
[1] "Remove cluster labels:"   "AMP PEAK 16(14Q24.1) CNV"
clus
      AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE 
                             2                             12 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3TQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 16(14Q24.1) WILD-TYPE" "AMP PEAK 16(14Q24.1) WILD-TYPE" 
D16V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(14Q24.1) CNV          6    2
  AMP PEAK 16(14Q24.1) WILD-TYPE   17   12
    clus
vv   AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE
  M0                        6                             17
  MX                        2                             12
D16V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(14Q24.1) CNV          5    3
  AMP PEAK 16(14Q24.1) WILD-TYPE   19   11
    clus
vv   AMP PEAK 16(14Q24.1) CNV AMP PEAK 16(14Q24.1) WILD-TYPE
  N0                        5                             19
  N1                        3                             11
D16V7, continuous
D16V8, continuous

Clustering(17) Variable = Amp Peak 17(15q26.3)
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(15Q26.3) CNV        8  1
  AMP PEAK 17(15Q26.3) WILD-TYPE 26  6
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                             9                             32 
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                             1                              6 
$`AMP PEAK 17(15Q26.3) CNV`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1MK TCGA-DS-A0VL TCGA-EA-A3HQ TCGA-EA-A3HR 
       49.48       177.04         2.43         2.66         1.74         1.32 
TCGA-EX-A3L1 TCGA-FU-A23L TCGA-HM-A3JK 
        6.94         1.22         5.52 

$`AMP PEAK 17(15Q26.3) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       30.41        36.56         5.46        67.46        53.13        35.61 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM 
       40.93        78.31        70.85        42.38        36.76        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
       95.08         6.02         0.26         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        1.78         5.85         7.92         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.45         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ 
       25.41        21.67 

      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                          1.22                           0.07 
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                        177.04                          95.08 
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                         2.660                          5.935 
[1] "1.2 - 177.0 (2.7)" "0.1 - 95.1 (5.9)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
      "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
      "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "AMP PEAK 17(15Q26.3) CNV" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 17(15Q26.3) WILD-TYPE"       "AMP PEAK 17(15Q26.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
      "AMP PEAK 17(15Q26.3) CNV" 
[1] "hr=" "1.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(15Q26.3) CNV          2    8
  AMP PEAK 17(15Q26.3) WILD-TYPE   11   21
     clus
vv    AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE
  NO                         2                             11
  YES                        8                             21
D17V4, continuous
[1] "Remove cluster labels:"   "AMP PEAK 17(15Q26.3) CNV"
clus
      AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE 
                             1                             13 
                    TCGA-C5-A1BI                     TCGA-C5-A1BN 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3TQ                     TCGA-FU-A3WB 
"AMP PEAK 17(15Q26.3) WILD-TYPE" "AMP PEAK 17(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3YQ 
"AMP PEAK 17(15Q26.3) WILD-TYPE" 
D17V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(15Q26.3) CNV          5    3
  AMP PEAK 17(15Q26.3) WILD-TYPE   18   11
    clus
vv   AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE
  M0                        5                             18
  MX                        3                             11
D17V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(15Q26.3) CNV          6    2
  AMP PEAK 17(15Q26.3) WILD-TYPE   18   12
    clus
vv   AMP PEAK 17(15Q26.3) CNV AMP PEAK 17(15Q26.3) WILD-TYPE
  N0                        6                             18
  N1                        2                             12
D17V7, continuous
D17V8, continuous

Clustering(18) Variable = Amp Peak 18(16p13.2)
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(16P13.2) CNV        9  0
  AMP PEAK 18(16P13.2) WILD-TYPE 25  7
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                             9                             32 
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                             0                              7 
$`AMP PEAK 18(16P13.2) CNV`
TCGA-BI-A0VS TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A439 TCGA-FU-A23L 
       30.41        95.08         6.02         1.74         0.66         1.22 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-HM-A3JK 
        1.45         1.58         5.52 

$`AMP PEAK 18(16P13.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS 
       36.76         2.66        69.93         0.26         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.62         1.78         5.85         7.92         6.94         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.99         2.17         0.07         1.02         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ 
       25.41        21.67 

      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                          0.66                           0.07 
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                         95.08                         177.04 
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                         1.740                          6.395 
[1] "0.7 - 95.1 (1.7)"  "0.1 - 177.0 (6.4)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "AMP PEAK 18(16P13.2) CNV"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 18(16P13.2) CNV"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
      "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "AMP PEAK 18(16P13.2) CNV"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 18(16P13.2) CNV"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
      "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "AMP PEAK 18(16P13.2) CNV"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 18(16P13.2) WILD-TYPE"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 18(16P13.2) CNV"       "AMP PEAK 18(16P13.2) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
      "AMP PEAK 18(16P13.2) CNV" 
[1] "hr="     "2.3e+08"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(16P13.2) CNV          3    7
  AMP PEAK 18(16P13.2) WILD-TYPE   10   22
     clus
vv    AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE
  NO                         3                             10
  YES                        7                             22
D18V4, continuous
[1] "Remove cluster labels:"   "AMP PEAK 18(16P13.2) CNV"
clus
      AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE 
                             1                             13 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3WB 
"AMP PEAK 18(16P13.2) WILD-TYPE" "AMP PEAK 18(16P13.2) WILD-TYPE" 
                    TCGA-FU-A3YQ 
"AMP PEAK 18(16P13.2) WILD-TYPE" 
D18V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(16P13.2) CNV          5    4
  AMP PEAK 18(16P13.2) WILD-TYPE   18   10
    clus
vv   AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE
  M0                        5                             18
  MX                        4                             10
D18V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(16P13.2) CNV          5    4
  AMP PEAK 18(16P13.2) WILD-TYPE   19   10
    clus
vv   AMP PEAK 18(16P13.2) CNV AMP PEAK 18(16P13.2) WILD-TYPE
  N0                        5                             19
  N1                        4                             10
D18V7, continuous
D18V8, continuous

Clustering(19) Variable = Amp Peak 19(16p13.13)
D19V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 19(16P13.13) CNV        9  0
  AMP PEAK 19(16P13.13) WILD-TYPE 25  7
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                              9                              32 
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                              0                               7 
$`AMP PEAK 19(16P13.13) CNV`
TCGA-BI-A0VS TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A439 TCGA-FU-A23L TCGA-FU-A3EO 
       30.41         6.02         1.74         0.66         1.22         2.17 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-HM-A3JK 
        1.45         1.58         5.52 

$`AMP PEAK 19(16P13.13) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR 
       36.76         2.66        69.93        95.08         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.82         0.62         1.78         5.85         7.92         6.94 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.22         0.99         0.07         1.02         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ 
       25.41        21.67 

      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                           0.66                            0.07 
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                          30.41                          177.04 
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                           1.74                            7.43 
[1] "0.7 - 30.4 (1.7)"  "0.1 - 177.0 (7.4)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 19(16P13.13) CNV"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JK 
      "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 19(16P13.13) CNV"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JK 
      "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 19(16P13.13) WILD-TYPE"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 19(16P13.13) CNV"       "AMP PEAK 19(16P13.13) CNV" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JK 
      "AMP PEAK 19(16P13.13) CNV" 
[1] "hr="   "8e+07"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 19(16P13.13) CNV          2    8
  AMP PEAK 19(16P13.13) WILD-TYPE   11   21
     clus
vv    AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE
  NO                          2                              11
  YES                         8                              21
D19V4, continuous
[1] "Remove cluster labels:"    "AMP PEAK 19(16P13.13) CNV"
clus
      AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE 
                              2                              12 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MF 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MN 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-EX-A1H5 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3HY 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 19(16P13.13) WILD-TYPE" "AMP PEAK 19(16P13.13) WILD-TYPE" 
D19V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 19(16P13.13) CNV          4    5
  AMP PEAK 19(16P13.13) WILD-TYPE   19    9
    clus
vv   AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE
  M0                         4                              19
  MX                         5                               9
D19V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 19(16P13.13) CNV          5    4
  AMP PEAK 19(16P13.13) WILD-TYPE   19   10
    clus
vv   AMP PEAK 19(16P13.13) CNV AMP PEAK 19(16P13.13) WILD-TYPE
  N0                         5                              19
  N1                         4                              10
D19V7, continuous
D19V8, continuous

Clustering(20) Variable = Amp Peak 20(17q12)
D20V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 20(17Q12) CNV        4  1
  AMP PEAK 20(17Q12) WILD-TYPE 30  6
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                           5                           36 
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                           1                            6 
$`AMP PEAK 20(17Q12) CNV`
TCGA-C5-A1MI TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EX-A3L1 
       35.61        69.93         6.02         1.32         6.94 

$`AMP PEAK 20(17Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS 
       36.76         2.66        95.08         0.26         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K 
        0.62         0.66         1.78         5.85         7.92         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.58         0.79         3.48        25.41        21.67         5.52 

      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                        1.32                         0.07 
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                       69.93                       177.04 
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                        6.94                         4.47 
[1] "1.3 - 69.9 (6.9)"  "0.1 - 177.0 (4.5)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
      "AMP PEAK 20(17Q12) CNV" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
      "AMP PEAK 20(17Q12) CNV" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
      "AMP PEAK 20(17Q12) CNV" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 20(17Q12) WILD-TYPE"       "AMP PEAK 20(17Q12) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"AMP PEAK 20(17Q12) WILD-TYPE" 
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(17Q12) CNV          2    3
  AMP PEAK 20(17Q12) WILD-TYPE   11   26
     clus
vv    AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE
  NO                       2                           11
  YES                      3                           26
D20V4, continuous
[1] "Remove cluster labels:" "AMP PEAK 20(17Q12) CNV"
clus
      AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE 
                           1                           13 
                  TCGA-BI-A0VR                   TCGA-C5-A1BI 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1MF 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-DR-A0ZM 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-FU-A2QG 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3EO                   TCGA-FU-A3HY 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TQ                   TCGA-FU-A3WB 
"AMP PEAK 20(17Q12) WILD-TYPE" "AMP PEAK 20(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ 
"AMP PEAK 20(17Q12) WILD-TYPE" 
D20V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(17Q12) CNV          5    0
  AMP PEAK 20(17Q12) WILD-TYPE   18   14
    clus
vv   AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE
  M0                      5                           18
  MX                      0                           14
D20V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 20(17Q12) CNV          2    3
  AMP PEAK 20(17Q12) WILD-TYPE   22   11
    clus
vv   AMP PEAK 20(17Q12) CNV AMP PEAK 20(17Q12) WILD-TYPE
  N0                      2                           22
  N1                      3                           11
D20V7, continuous
D20V8, continuous

Clustering(21) Variable = Amp Peak 21(17q25.1)
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(17Q25.1) CNV        9  2
  AMP PEAK 21(17Q25.1) WILD-TYPE 25  5
      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                            11                             30 
      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                             2                              5 
$`AMP PEAK 21(17Q25.1) CNV`
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       53.13        35.61        36.76         6.02         1.74         1.32 
TCGA-EA-A439 TCGA-EX-A3L1 TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.66         6.94         0.07         1.45         1.58 

$`AMP PEAK 21(17Q25.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
        2.43        40.93        78.31        70.85        42.38         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B 
       69.93        95.08         0.26         0.82         0.62         1.78 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        5.85         7.92         1.22         1.22         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.02         0.79         3.48        25.41        21.67         5.52 

      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                          0.07                           0.26 
      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                         53.13                         177.04 
      AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE 
                         1.740                          5.685 
[1] "0.1 - 53.1 (1.7)"  "0.3 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 21(17Q25.1) CNV"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "AMP PEAK 21(17Q25.1) CNV" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 21(17Q25.1) CNV" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 21(17Q25.1) CNV"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 21(17Q25.1) CNV"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "AMP PEAK 21(17Q25.1) CNV" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 21(17Q25.1) CNV" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 21(17Q25.1) CNV"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "AMP PEAK 21(17Q25.1) CNV"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "AMP PEAK 21(17Q25.1) CNV" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"AMP PEAK 21(17Q25.1) WILD-TYPE"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "AMP PEAK 21(17Q25.1) CNV" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "AMP PEAK 21(17Q25.1) CNV"       "AMP PEAK 21(17Q25.1) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"AMP PEAK 21(17Q25.1) WILD-TYPE" "AMP PEAK 21(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 21(17Q25.1) WILD-TYPE" 
[1] "hr=" "2.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(17Q25.1) CNV          3    9
  AMP PEAK 21(17Q25.1) WILD-TYPE   10   20
     clus
vv    AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE
  NO                         3                             10
  YES                        9                             20
D21V4, continuous
D21V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(17Q25.1) CNV          7    4
  AMP PEAK 21(17Q25.1) WILD-TYPE   16   10
    clus
vv   AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE
  M0                        7                             16
  MX                        4                             10
D21V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(17Q25.1) CNV          5    6
  AMP PEAK 21(17Q25.1) WILD-TYPE   19    8
    clus
vv   AMP PEAK 21(17Q25.1) CNV AMP PEAK 21(17Q25.1) WILD-TYPE
  N0                        5                             19
  N1                        6                              8
D21V7, continuous
D21V8, continuous

Clustering(22) Variable = Amp Peak 22(19q13.31)
D22V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 22(19Q13.31) CNV       10  4
  AMP PEAK 22(19Q13.31) WILD-TYPE 24  3
      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                             14                              27 
      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                              4                               3 
$`AMP PEAK 22(19Q13.31) CNV`
TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DS-A0VL 
        5.46        53.13        35.61         2.43        78.31         2.66 
TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L TCGA-FU-A3NI 
        6.02         1.32         0.66         1.78         1.22         1.45 
TCGA-HM-A3JJ TCGA-HM-A3JK 
       21.67         5.52 

$`AMP PEAK 22(19Q13.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MN 
       49.48        30.41        36.56       177.04        67.46        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT 
       70.85        42.38        36.76        69.93        95.08         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        1.74         0.82         0.62         5.85         7.92         6.94 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA 
        0.79         3.48        25.41 

      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                           0.66                            0.07 
      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                          78.31                          177.04 
      AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE 
                           4.06                            6.94 
[1] "0.7 - 78.3 (4.1)"  "0.1 - 177.0 (6.9)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
      "AMP PEAK 22(19Q13.31) CNV"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-HM-A3JK 
      "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
      "AMP PEAK 22(19Q13.31) CNV"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-HM-A3JK 
      "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
      "AMP PEAK 22(19Q13.31) CNV"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 22(19Q13.31) CNV" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 22(19Q13.31) WILD-TYPE" "AMP PEAK 22(19Q13.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"AMP PEAK 22(19Q13.31) WILD-TYPE"       "AMP PEAK 22(19Q13.31) CNV" 
                     TCGA-HM-A3JK 
      "AMP PEAK 22(19Q13.31) CNV" 
[1] "hr=" "4.3"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(19Q13.31) CNV          8    6
  AMP PEAK 22(19Q13.31) WILD-TYPE    5   23
     clus
vv    AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE
  NO                          8                               5
  YES                         6                              23
D22V4, continuous
D22V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(19Q13.31) CNV          7    5
  AMP PEAK 22(19Q13.31) WILD-TYPE   16    9
    clus
vv   AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE
  M0                         7                              16
  MX                         5                               9
D22V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(19Q13.31) CNV          7    5
  AMP PEAK 22(19Q13.31) WILD-TYPE   17    9
    clus
vv   AMP PEAK 22(19Q13.31) CNV AMP PEAK 22(19Q13.31) WILD-TYPE
  N0                         7                              17
  N1                         5                               9
D22V7, continuous
D22V8, continuous

Clustering(23) Variable = Amp Peak 23(20q11.21)
D23V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 23(20Q11.21) CNV       15  5
  AMP PEAK 23(20Q11.21) WILD-TYPE 19  2
      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                             20                              21 
      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                              5                               2 
$`AMP PEAK 23(20Q11.21) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK 
       49.48        30.41        35.61         2.43        40.93        36.76 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 
        6.02         0.26         1.74         1.32         0.82         0.66 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA 
        1.22         1.22         2.17         0.07         1.45        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK 
       21.67         5.52 

$`AMP PEAK 23(20Q11.21) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A2LY 
       36.56       177.04         5.46        67.46        53.13        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A3HT 
       70.85        42.38         2.66        69.93        95.08         0.62 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3HZ 
        1.78         5.85         7.92         6.94         0.99         1.02 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.58         0.79         3.48 

      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                           0.07                            0.62 
      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                          49.48                          177.04 
      AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE 
                           2.30                            6.94 
[1] "0.1 - 49.5 (2.3)"  "0.6 - 177.0 (6.9)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
      "AMP PEAK 23(20Q11.21) CNV" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 23(20Q11.21) CNV" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-HM-A3JK 
      "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
      "AMP PEAK 23(20Q11.21) CNV" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 23(20Q11.21) CNV" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-HM-A3JK 
      "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 23(20Q11.21) WILD-TYPE"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
      "AMP PEAK 23(20Q11.21) CNV" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
      "AMP PEAK 23(20Q11.21) CNV" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE" "AMP PEAK 23(20Q11.21) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
      "AMP PEAK 23(20Q11.21) CNV"       "AMP PEAK 23(20Q11.21) CNV" 
                     TCGA-HM-A3JK 
      "AMP PEAK 23(20Q11.21) CNV" 
[1] "hr=" "11" 
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q11.21) CNV          6   15
  AMP PEAK 23(20Q11.21) WILD-TYPE    7   14
     clus
vv    AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE
  NO                          6                               7
  YES                        15                              14
D23V4, continuous
D23V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q11.21) CNV         11    7
  AMP PEAK 23(20Q11.21) WILD-TYPE   12    7
    clus
vv   AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE
  M0                        11                              12
  MX                         7                               7
D23V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q11.21) CNV          9    9
  AMP PEAK 23(20Q11.21) WILD-TYPE   15    5
    clus
vv   AMP PEAK 23(20Q11.21) CNV AMP PEAK 23(20Q11.21) WILD-TYPE
  N0                         9                              15
  N1                         9                               5
D23V7, continuous
D23V8, continuous

Clustering(24) Variable = Amp Peak 24(Xq28)
D24V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 24(XQ28) CNV        8  0
  AMP PEAK 24(XQ28) WILD-TYPE 26  7
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                          8                          33 
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                          0                           7 
$`AMP PEAK 24(XQ28) CNV`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A439 
       30.41       177.04        53.13         6.02         1.74         0.66 
TCGA-FU-A23L TCGA-FU-A3NI 
        1.22         1.45 

$`AMP PEAK 24(XQ28) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK 
       49.48        36.56         5.46        67.46        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       69.93        95.08         0.26         1.32         0.82         0.62 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG 
        1.78         5.85         7.92         6.94         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        2.17         0.07         1.02         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
       25.41        21.67         5.52 

      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                       0.66                        0.07 
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                     177.04                       95.08 
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                       3.88                        5.52 
[1] "0.7 - 177.0 (3.9)" "0.1 - 95.1 (5.5)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK 24(XQ28) CNV" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK 24(XQ28) CNV" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK 24(XQ28) CNV" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK 24(XQ28) CNV" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
      "AMP PEAK 24(XQ28) CNV" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 24(XQ28) WILD-TYPE"       "AMP PEAK 24(XQ28) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
      "AMP PEAK 24(XQ28) CNV" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 24(XQ28) WILD-TYPE" 
[1] "hr="     "2.4e+08"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 24(XQ28) CNV          2    6
  AMP PEAK 24(XQ28) WILD-TYPE   11   23
     clus
vv    AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE
  NO                      2                          11
  YES                     6                          23
D24V4, continuous
[1] "Remove cluster labels:" "AMP PEAK 24(XQ28) CNV" 
clus
      AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE 
                          1                          13 
                 TCGA-BI-A0VR                  TCGA-C5-A1BI 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1MI 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-DR-A0ZM 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-FU-A2QG 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3EO                  TCGA-FU-A3HY 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TQ                  TCGA-FU-A3WB 
"AMP PEAK 24(XQ28) WILD-TYPE" "AMP PEAK 24(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ 
"AMP PEAK 24(XQ28) WILD-TYPE" 
D24V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 24(XQ28) CNV          4    4
  AMP PEAK 24(XQ28) WILD-TYPE   19   10
    clus
vv   AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE
  M0                     4                          19
  MX                     4                          10
D24V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 24(XQ28) CNV          6    2
  AMP PEAK 24(XQ28) WILD-TYPE   18   12
    clus
vv   AMP PEAK 24(XQ28) CNV AMP PEAK 24(XQ28) WILD-TYPE
  N0                     6                          18
  N1                     2                          12
D24V7, continuous
D24V8, continuous

Clustering(25) Variable = Del Peak  1(1p36.23)
D25V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.23) CNV        5  1
  DEL PEAK  1(1P36.23) WILD-TYPE 29  6
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                             6                             35 
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                             1                              6 
$`DEL PEAK  1(1P36.23) CNV`
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VM TCGA-EA-A3HR TCGA-EA-A439 TCGA-FU-A3EO 
       53.13        35.61        69.93         1.32         0.66         2.17 

$`DEL PEAK  1(1P36.23) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS 
        2.66        95.08         6.02         0.26         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.62         1.78         5.85         7.92         6.94         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         0.99         0.07         1.02         1.45         1.58 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.79         3.48        25.41        21.67         5.52 

      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                          0.66                           0.07 
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                         69.93                         177.04 
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                         18.89                           5.52 
[1] "0.7 - 69.9 (18.9)" "0.1 - 177.0 (5.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "DEL PEAK  1(1P36.23) CNV"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK  1(1P36.23) CNV" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "DEL PEAK  1(1P36.23) CNV"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK  1(1P36.23) CNV" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "DEL PEAK  1(1P36.23) CNV"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK  1(1P36.23) CNV" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"       "DEL PEAK  1(1P36.23) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) CNV          2    5
  DEL PEAK  1(1P36.23) WILD-TYPE   11   24
     clus
vv    DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  NO                         2                             11
  YES                        5                             24
D25V4, continuous
D25V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) CNV          4    2
  DEL PEAK  1(1P36.23) WILD-TYPE   19   12
    clus
vv   DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  M0                        4                             19
  MX                        2                             12
D25V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) CNV          4    2
  DEL PEAK  1(1P36.23) WILD-TYPE   20   12
    clus
vv   DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  N0                        4                             20
  N1                        2                             12
D25V7, continuous
D25V8, continuous

Clustering(26) Variable = Del Peak  2(1p13.1)
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P13.1) CNV        5  1
  DEL PEAK  2(1P13.1) WILD-TYPE 29  6
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                            6                            35 
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                            1                             6 
$`DEL PEAK  2(1P13.1) CNV`
TCGA-C5-A1MI TCGA-C5-A2LY TCGA-DS-A0VN TCGA-EA-A3HR TCGA-FU-A3NI TCGA-HG-A2PA 
       35.61        78.31        95.08         1.32         1.45        25.41 

$`DEL PEAK  2(1P13.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       53.13         2.43        40.93        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS 
        2.66        69.93         6.02         0.26         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.62         0.66         1.78         5.85         7.92         6.94 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.58         0.79         3.48        21.67         5.52 

      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                         1.32                          0.07 
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                        95.08                        177.04 
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                        30.51                          5.46 
[1] "1.3 - 95.1 (30.5)" "0.1 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  2(1P13.1) WILD-TYPE"       "DEL PEAK  2(1P13.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  2(1P13.1) WILD-TYPE"       "DEL PEAK  2(1P13.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  2(1P13.1) WILD-TYPE"       "DEL PEAK  2(1P13.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  2(1P13.1) CNV" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  2(1P13.1) WILD-TYPE" 
[1] "hr=" "1.7"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) CNV          3    4
  DEL PEAK  2(1P13.1) WILD-TYPE   10   25
     clus
vv    DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE
  NO                        3                            10
  YES                       4                            25
D26V4, continuous
[1] "Remove cluster labels:"  "DEL PEAK  2(1P13.1) CNV"
clus
      DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE 
                            1                            13 
                   TCGA-BI-A0VR                    TCGA-C5-A1BI 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-DR-A0ZM 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-FU-A2QG 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3EO                    TCGA-FU-A3HY 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3TQ                    TCGA-FU-A3WB 
"DEL PEAK  2(1P13.1) WILD-TYPE" "DEL PEAK  2(1P13.1) WILD-TYPE" 
                   TCGA-FU-A3YQ 
"DEL PEAK  2(1P13.1) WILD-TYPE" 
D26V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) CNV          5    1
  DEL PEAK  2(1P13.1) WILD-TYPE   18   13
    clus
vv   DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE
  M0                       5                            18
  MX                       1                            13
D26V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) CNV          4    2
  DEL PEAK  2(1P13.1) WILD-TYPE   20   12
    clus
vv   DEL PEAK  2(1P13.1) CNV DEL PEAK  2(1P13.1) WILD-TYPE
  N0                       4                            20
  N1                       2                            12
D26V7, continuous
D26V8, continuous

Clustering(27) Variable = Del Peak  3(2q22.1)
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q22.1) CNV        4  2
  DEL PEAK  3(2Q22.1) WILD-TYPE 30  5
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                            6                            35 
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                            2                             5 
$`DEL PEAK  3(2Q22.1) CNV`
TCGA-C5-A1BI TCGA-C5-A1BN TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-HM-A3JJ 
       36.56         5.46        95.08         6.02         1.32        21.67 

$`DEL PEAK  3(2Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
        2.66        69.93         0.26         1.74         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.66         1.78         5.85         7.92         6.94         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.58         0.79         3.48        25.41         5.52 

      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                         1.32                          0.07 
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                        95.08                        177.04 
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                       13.845                         3.480 
[1] "1.3 - 95.1 (13.8)" "0.1 - 177.0 (3.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  3(2Q22.1) CNV"       "DEL PEAK  3(2Q22.1) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE"       "DEL PEAK  3(2Q22.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  3(2Q22.1) CNV"       "DEL PEAK  3(2Q22.1) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE"       "DEL PEAK  3(2Q22.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  3(2Q22.1) CNV"       "DEL PEAK  3(2Q22.1) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  3(2Q22.1) CNV" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE"       "DEL PEAK  3(2Q22.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  3(2Q22.1) WILD-TYPE" 
[1] "hr=" "2.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) CNV          5    1
  DEL PEAK  3(2Q22.1) WILD-TYPE    8   28
     clus
vv    DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  NO                        5                             8
  YES                       1                            28
D27V4, continuous
[1] "Remove cluster labels:"  "DEL PEAK  3(2Q22.1) CNV"
clus
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                            2                            12 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-EX-A1H5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3TQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
D27V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) CNV          4    1
  DEL PEAK  3(2Q22.1) WILD-TYPE   19   13
    clus
vv   DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  M0                       4                            19
  MX                       1                            13
D27V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) CNV          2    3
  DEL PEAK  3(2Q22.1) WILD-TYPE   22   11
    clus
vv   DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  N0                       2                            22
  N1                       3                            11
D27V7, continuous
D27V8, continuous

Clustering(28) Variable = Del Peak  4(2q37.1)
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2Q37.1) CNV       16  2
  DEL PEAK  4(2Q37.1) WILD-TYPE 18  5
      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                           18                            23 
      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                            2                             5 
$`DEL PEAK  4(2Q37.1) CNV`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY TCGA-DR-A0ZL 
       30.41        36.56       177.04         5.46        78.31        70.85 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B 
        2.66        69.93        95.08         0.26         1.32         1.78 
TCGA-EX-A1H6 TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3WB TCGA-HM-A3JJ 
        7.92         0.99         0.07         1.45         0.79        21.67 

$`DEL PEAK  4(2Q37.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN 
       49.48        67.46        53.13        35.61         2.43        40.93 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       42.38        36.76         6.02         1.74         0.82         0.62 
TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO 
        0.66         5.85         6.94         1.22         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02         1.58         3.48        25.41         5.52 

      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                         0.07                          0.62 
      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                       177.04                         67.46 
      DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE 
                         6.69                          5.52 
[1] "0.1 - 177.0 (6.7)" "0.6 - 67.5 (5.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  4(2Q37.1) WILD-TYPE"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  4(2Q37.1) WILD-TYPE"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  4(2Q37.1) WILD-TYPE"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  4(2Q37.1) WILD-TYPE"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  4(2Q37.1) WILD-TYPE"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "DEL PEAK  4(2Q37.1) CNV"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(2Q37.1) WILD-TYPE" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
      "DEL PEAK  4(2Q37.1) CNV" "DEL PEAK  4(2Q37.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  4(2Q37.1) WILD-TYPE"       "DEL PEAK  4(2Q37.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(2Q37.1) WILD-TYPE" 
[1] "hr=" "3"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.1) CNV          5   14
  DEL PEAK  4(2Q37.1) WILD-TYPE    8   15
     clus
vv    DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE
  NO                        5                             8
  YES                      14                            15
D28V4, continuous
D28V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.1) CNV         10    6
  DEL PEAK  4(2Q37.1) WILD-TYPE   13    8
    clus
vv   DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE
  M0                      10                            13
  MX                       6                             8
D28V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.1) CNV         12    5
  DEL PEAK  4(2Q37.1) WILD-TYPE   12    9
    clus
vv   DEL PEAK  4(2Q37.1) CNV DEL PEAK  4(2Q37.1) WILD-TYPE
  N0                      12                            12
  N1                       5                             9
D28V7, continuous
D28V8, continuous

Clustering(29) Variable = Del Peak  5(3p11.1)
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P11.1) CNV       15  5
  DEL PEAK  5(3P11.1) WILD-TYPE 19  2
      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                           20                            21 
      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                            5                             2 
$`DEL PEAK  5(3P11.1) CNV`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN 
       49.48        36.56         5.46        53.13        35.61        40.93 
TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HS 
       70.85        36.76        69.93        95.08         0.26         0.82 
TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3YQ 
        0.66         5.85         1.22         0.07         1.45         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ 
       25.41        21.67 

$`DEL PEAK  5(3P11.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM 
       30.41       177.04        67.46         2.43        78.31        42.38 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EA-A43B 
        2.66         6.02         1.74         1.32         0.62         1.78 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        7.92         6.94         1.22         0.99         2.17         1.02 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HM-A3JK 
        1.58         0.79         5.52 

      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                         0.07                          0.62 
      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                        95.08                        177.04 
      DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE 
                        23.54                          2.43 
[1] "0.1 - 95.1 (23.5)" "0.6 - 177.0 (2.4)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "DEL PEAK  5(3P11.1) CNV"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  5(3P11.1) WILD-TYPE" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(3P11.1) WILD-TYPE" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  5(3P11.1) CNV"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "DEL PEAK  5(3P11.1) CNV"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  5(3P11.1) WILD-TYPE" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(3P11.1) WILD-TYPE" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  5(3P11.1) CNV"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "DEL PEAK  5(3P11.1) CNV"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  5(3P11.1) WILD-TYPE" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(3P11.1) WILD-TYPE" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  5(3P11.1) CNV" "DEL PEAK  5(3P11.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  5(3P11.1) WILD-TYPE"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  5(3P11.1) CNV"       "DEL PEAK  5(3P11.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  5(3P11.1) WILD-TYPE" 
[1] "hr=" "1.6"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P11.1) CNV          8   13
  DEL PEAK  5(3P11.1) WILD-TYPE    5   16
     clus
vv    DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE
  NO                        8                             5
  YES                      13                            16
D29V4, continuous
D29V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P11.1) CNV         11    7
  DEL PEAK  5(3P11.1) WILD-TYPE   12    7
    clus
vv   DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE
  M0                      11                            12
  MX                       7                             7
D29V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P11.1) CNV          9    9
  DEL PEAK  5(3P11.1) WILD-TYPE   15    5
    clus
vv   DEL PEAK  5(3P11.1) CNV DEL PEAK  5(3P11.1) WILD-TYPE
  N0                       9                            15
  N1                       9                             5
D29V7, continuous
D29V8, continuous

Clustering(30) Variable = Del Peak  6(4q22.1)
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q22.1) CNV        8  3
  DEL PEAK  6(4Q22.1) WILD-TYPE 26  4
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                           11                            30 
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                            3                             4 
$`DEL PEAK  6(4Q22.1) CNV`
TCGA-BI-A0VR TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-EA-A1QT TCGA-EA-A439 
       49.48         5.46        35.61        70.85         0.26         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3NI TCGA-HM-A3JJ 
        1.78         5.85         6.94         1.45        21.67 

$`DEL PEAK  6(4Q22.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       30.41        36.56       177.04        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       40.93        78.31        42.38        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       95.08         6.02         1.74         1.32         0.82         0.62 
TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        7.92         1.22         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02         1.58         0.79         3.48        25.41         5.52 

      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                         0.26                          0.07 
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                        70.85                        177.04 
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                         5.85                          4.50 
[1] "0.3 - 70.8 (5.8)"  "0.1 - 177.0 (4.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  6(4Q22.1) CNV"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  6(4Q22.1) CNV"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  6(4Q22.1) CNV"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  6(4Q22.1) CNV" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  6(4Q22.1) WILD-TYPE"       "DEL PEAK  6(4Q22.1) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  6(4Q22.1) WILD-TYPE" 
[1] "hr=" "2.5"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) CNV          4    7
  DEL PEAK  6(4Q22.1) WILD-TYPE    9   22
     clus
vv    DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  NO                        4                             9
  YES                       7                            22
D30V4, continuous
D30V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) CNV          7    3
  DEL PEAK  6(4Q22.1) WILD-TYPE   16   11
    clus
vv   DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  M0                       7                            16
  MX                       3                            11
D30V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) CNV          5    5
  DEL PEAK  6(4Q22.1) WILD-TYPE   19    9
    clus
vv   DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  N0                       5                            19
  N1                       5                             9
D30V7, continuous
D30V8, continuous

Clustering(31) Variable = Del Peak  7(4q35.2)
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(4Q35.2) CNV       10  5
  DEL PEAK  7(4Q35.2) WILD-TYPE 24  2
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                           15                            26 
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                            5                             2 
$`DEL PEAK  7(4Q35.2) CNV`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL 
       30.41         5.46        67.46        35.61        40.93        70.85 
TCGA-EA-A1QT TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.26         0.62         0.66         1.78         5.85         6.94 
TCGA-FU-A2QG TCGA-FU-A3NI TCGA-HM-A3JJ 
        0.99         1.45        21.67 

$`DEL PEAK  7(4Q35.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        36.56       177.04        53.13         2.43        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       42.38        36.76         2.66        69.93        95.08         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A23L 
        1.74         1.32         0.82         7.92         1.22         1.22 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        2.17         0.07         1.02         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                         0.26                          0.07 
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                        70.85                        177.04 
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                         5.85                          4.50 
[1] "0.3 - 70.8 (5.8)"  "0.1 - 177.0 (4.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK  7(4Q35.2) CNV"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  7(4Q35.2) CNV" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK  7(4Q35.2) WILD-TYPE"       "DEL PEAK  7(4Q35.2) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  7(4Q35.2) WILD-TYPE" 
[1] "hr=" "5"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) CNV          5   10
  DEL PEAK  7(4Q35.2) WILD-TYPE    8   19
     clus
vv    DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  NO                        5                             8
  YES                      10                            19
D31V4, continuous
D31V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) CNV          9    3
  DEL PEAK  7(4Q35.2) WILD-TYPE   14   11
    clus
vv   DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  M0                       9                            14
  MX                       3                            11
D31V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) CNV          9    4
  DEL PEAK  7(4Q35.2) WILD-TYPE   15   10
    clus
vv   DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  N0                       9                            15
  N1                       4                            10
D31V7, continuous
D31V8, continuous

Clustering(32) Variable = Del Peak  8(5q14.3)
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q14.3) CNV       13  5
  DEL PEAK  8(5Q14.3) WILD-TYPE 21  2
      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                           18                            23 
      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                            5                             2 
$`DEL PEAK  8(5Q14.3) CNV`
TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK 
      177.04         5.46        35.61        40.93        70.85        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 TCGA-EX-A1H5 
        2.66        69.93         0.26         1.32         0.66         5.85 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.22         0.99         0.07         1.45        25.41        21.67 

$`DEL PEAK  8(5Q14.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        30.41        36.56        67.46        53.13         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS 
       78.31        42.38        95.08         6.02         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A3EO 
        0.62         1.78         7.92         6.94         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HM-A3JK 
        1.02         1.58         0.79         3.48         5.52 

      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                         0.07                          0.62 
      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                       177.04                         95.08 
      DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE 
                        5.655                         5.520 
[1] "0.1 - 177.0 (5.7)" "0.6 - 95.1 (5.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "DEL PEAK  8(5Q14.3) CNV"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  8(5Q14.3) CNV"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "DEL PEAK  8(5Q14.3) CNV"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  8(5Q14.3) CNV"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
      "DEL PEAK  8(5Q14.3) CNV"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(5Q14.3) WILD-TYPE"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK  8(5Q14.3) CNV" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  8(5Q14.3) WILD-TYPE" "DEL PEAK  8(5Q14.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  8(5Q14.3) CNV"       "DEL PEAK  8(5Q14.3) CNV" 
                   TCGA-HM-A3JK 
"DEL PEAK  8(5Q14.3) WILD-TYPE" 
[1] "hr=" "3"  
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q14.3) CNV          5   13
  DEL PEAK  8(5Q14.3) WILD-TYPE    8   16
     clus
vv    DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE
  NO                        5                             8
  YES                      13                            16
D32V4, continuous
D32V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q14.3) CNV          9    6
  DEL PEAK  8(5Q14.3) WILD-TYPE   14    8
    clus
vv   DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE
  M0                       9                            14
  MX                       6                             8
D32V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q14.3) CNV          9    7
  DEL PEAK  8(5Q14.3) WILD-TYPE   15    7
    clus
vv   DEL PEAK  8(5Q14.3) CNV DEL PEAK  8(5Q14.3) WILD-TYPE
  N0                       9                            15
  N1                       7                             7
D32V7, continuous
D32V8, continuous

Clustering(33) Variable = Del Peak  9(6p24.3)
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(6P24.3) CNV        5  1
  DEL PEAK  9(6P24.3) WILD-TYPE 29  6
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                            6                            35 
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                            1                             6 
$`DEL PEAK  9(6P24.3) CNV`
TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EX-A1H6 TCGA-FU-A3HY TCGA-HG-A2PA 
       36.76        69.93         6.02         7.92         0.07        25.41 

$`DEL PEAK  9(6P24.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       42.38         2.66        95.08         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.82         0.62         0.66         1.78         5.85         6.94 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         1.22         0.99         2.17         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.58         0.79         3.48        21.67         5.52 

      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                         0.07                          0.26 
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                        69.93                        177.04 
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                       16.665                         3.480 
[1] "0.1 - 69.9 (16.7)" "0.3 - 177.0 (3.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK  9(6P24.3) WILD-TYPE"       "DEL PEAK  9(6P24.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
      "DEL PEAK  9(6P24.3) CNV" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P24.3) CNV          1    6
  DEL PEAK  9(6P24.3) WILD-TYPE   12   23
     clus
vv    DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE
  NO                        1                            12
  YES                       6                            23
D33V4, continuous
[1] "Remove cluster labels:"  "DEL PEAK  9(6P24.3) CNV"
clus
      DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE 
                            1                            13 
                   TCGA-BI-A0VR                    TCGA-C5-A1BI 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-EX-A1H5 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3TQ                    TCGA-FU-A3WB 
"DEL PEAK  9(6P24.3) WILD-TYPE" "DEL PEAK  9(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ 
"DEL PEAK  9(6P24.3) WILD-TYPE" 
D33V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P24.3) CNV          4    2
  DEL PEAK  9(6P24.3) WILD-TYPE   19   12
    clus
vv   DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE
  M0                       4                            19
  MX                       2                            12
D33V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P24.3) CNV          2    4
  DEL PEAK  9(6P24.3) WILD-TYPE   22   10
    clus
vv   DEL PEAK  9(6P24.3) CNV DEL PEAK  9(6P24.3) WILD-TYPE
  N0                       2                            22
  N1                       4                            10
D33V7, continuous
D33V8, continuous

Clustering(34) Variable = Del Peak 10(6p12.1)
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(6P12.1) CNV        2  0
  DEL PEAK 10(6P12.1) WILD-TYPE 32  7
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            2                            39 
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            0                             7 
$`DEL PEAK 10(6P12.1) CNV`
TCGA-EX-A1H6 TCGA-FU-A3HY 
        7.92         0.07 

$`DEL PEAK 10(6P12.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       42.38        36.76         2.66        69.93        95.08         6.02 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        0.26         1.74         1.32         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        1.78         5.85         6.94         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        2.17         1.02         1.45         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
       25.41        21.67         5.52 

      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                         0.07                          0.26 
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                         7.92                        177.04 
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                        3.995                         5.520 
[1] "0.1 - 7.9 (4.0)"   "0.3 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK 10(6P12.1) CNV" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK 10(6P12.1) CNV" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK 10(6P12.1) CNV" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK 10(6P12.1) CNV" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
      "DEL PEAK 10(6P12.1) CNV" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK 10(6P12.1) CNV" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 10(6P12.1) WILD-TYPE" 
[1] "Remove cluster labels:"  "DEL PEAK 10(6P12.1) CNV"
clus
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            2                            39 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-FU-A23K 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A23L                    TCGA-FU-A2QG 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3EO                    TCGA-FU-A3HZ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 10(6P12.1) WILD-TYPE" 
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P12.1) CNV          0    3
  DEL PEAK 10(6P12.1) WILD-TYPE   13   26
     clus
vv    DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE
  NO                        0                            13
  YES                       3                            26
D34V4, continuous
[1] "Remove cluster labels:"  "DEL PEAK 10(6P12.1) CNV"
clus
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            1                            13 
                   TCGA-BI-A0VR                    TCGA-C5-A1BI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-EX-A1H5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3TQ                    TCGA-FU-A3WB 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3YQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" 
D34V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P12.1) CNV          0    2
  DEL PEAK 10(6P12.1) WILD-TYPE   23   12
    clus
vv   DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE
  M0                       0                            23
  MX                       2                            12
D34V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P12.1) CNV          1    1
  DEL PEAK 10(6P12.1) WILD-TYPE   23   13
    clus
vv   DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE
  N0                       1                            23
  N1                       1                            13
D34V7, continuous
[1] "Remove cluster labels:"  "DEL PEAK 10(6P12.1) CNV"
clus
      DEL PEAK 10(6P12.1) CNV DEL PEAK 10(6P12.1) WILD-TYPE 
                            2                            34 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1M5 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A43B 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3HZ                    TCGA-FU-A3NI 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3TQ                    TCGA-FU-A3WB 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-HG-A2PA 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 10(6P12.1) WILD-TYPE" "DEL PEAK 10(6P12.1) WILD-TYPE" 
D34V8, continuous

Clustering(35) Variable = Del Peak 11(6q26)
D35V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(6Q26) CNV       11  1
  DEL PEAK 11(6Q26) WILD-TYPE 23  6
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                         12                          29 
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                          1                           6 
$`DEL PEAK 11(6Q26) CNV`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A439 
       49.48        36.56        67.46        69.93         0.26         0.66 
TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3YQ TCGA-HM-A3JK 
        1.78         7.92         1.22         0.07         3.48         5.52 

$`DEL PEAK 11(6Q26) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04         5.46        53.13        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       95.08         6.02         1.74         1.32         0.82         0.62 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        5.85         6.94         1.22         0.99         2.17         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         1.58         0.79        25.41        21.67 

      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                       0.07                        0.62 
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                      69.93                      177.04 
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                       4.50                        5.85 
[1] "0.1 - 69.9 (4.5)"  "0.6 - 177.0 (5.8)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "DEL PEAK 11(6Q26) CNV" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "DEL PEAK 11(6Q26) CNV" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
      "DEL PEAK 11(6Q26) CNV" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"DEL PEAK 11(6Q26) WILD-TYPE"       "DEL PEAK 11(6Q26) CNV" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JK 
      "DEL PEAK 11(6Q26) CNV" 
[1] "hr=" "2.4"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) CNV          2   11
  DEL PEAK 11(6Q26) WILD-TYPE   11   18
     clus
vv    DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  NO                      2                          11
  YES                    11                          18
D35V4, continuous
D35V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) CNV          7    5
  DEL PEAK 11(6Q26) WILD-TYPE   16    9
    clus
vv   DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  M0                     7                          16
  MX                     5                           9
D35V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) CNV          7    5
  DEL PEAK 11(6Q26) WILD-TYPE   17    9
    clus
vv   DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  N0                     7                          17
  N1                     5                           9
D35V7, continuous
D35V8, continuous

Clustering(36) Variable = Del Peak 12(7q34)
D36V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 12(7Q34) CNV        4  5
  DEL PEAK 12(7Q34) WILD-TYPE 30  2
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                          9                          32 
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                          5                           2 
$`DEL PEAK 12(7Q34) CNV`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-EA-A3HT TCGA-EA-A439 
        5.46        67.46        35.61        40.93         0.62         0.66 
TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-HM-A3JJ 
        5.85         0.99        21.67 

$`DEL PEAK 12(7Q34) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        30.41        36.56       177.04        53.13         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       78.31        70.85        42.38        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       95.08         6.02         0.26         1.74         1.32         0.82 
TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO 
        1.78         7.92         6.94         1.22         1.22         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.45         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                       0.62                        0.07 
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                      67.46                      177.04 
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                       5.85                        4.50 
[1] "0.6 - 67.5 (5.8)"  "0.1 - 177.0 (4.5)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
      "DEL PEAK 12(7Q34) CNV"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "DEL PEAK 12(7Q34) CNV"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
      "DEL PEAK 12(7Q34) CNV" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-HM-A3JK 
"DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
      "DEL PEAK 12(7Q34) CNV"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "DEL PEAK 12(7Q34) CNV"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
      "DEL PEAK 12(7Q34) CNV" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-HM-A3JK 
"DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BI                  TCGA-C5-A1BK 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BN                  TCGA-C5-A1M5 
      "DEL PEAK 12(7Q34) CNV"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MI 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A1MK                  TCGA-C5-A1MN 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-C5-A2LY                  TCGA-DR-A0ZL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-DS-A0VK 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VL                  TCGA-DS-A0VM 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VN                  TCGA-DS-A3LQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
      "DEL PEAK 12(7Q34) CNV"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-EA-A43B                  TCGA-EX-A1H5 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-EX-A1H6                  TCGA-EX-A3L1 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
      "DEL PEAK 12(7Q34) CNV" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3WB                  TCGA-FU-A3YQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HG-A2PA                  TCGA-HM-A3JJ 
"DEL PEAK 12(7Q34) WILD-TYPE"       "DEL PEAK 12(7Q34) CNV" 
                 TCGA-HM-A3JK 
"DEL PEAK 12(7Q34) WILD-TYPE" 
[1] "hr=" "9"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(7Q34) CNV          5    4
  DEL PEAK 12(7Q34) WILD-TYPE    8   25
     clus
vv    DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  NO                      5                           8
  YES                     4                          25
D36V4, continuous
D36V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(7Q34) CNV          4    2
  DEL PEAK 12(7Q34) WILD-TYPE   19   12
    clus
vv   DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  M0                     4                          19
  MX                     2                          12
D36V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(7Q34) CNV          4    3
  DEL PEAK 12(7Q34) WILD-TYPE   20   11
    clus
vv   DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  N0                     4                          20
  N1                     3                          11
D36V7, continuous
D36V8, continuous

Clustering(37) Variable = Del Peak 13(10q23.31)
D37V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 13(10Q23.31) CNV        6  3
  DEL PEAK 13(10Q23.31) WILD-TYPE 28  4
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                              9                              32 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                              3                               4 
$`DEL PEAK 13(10Q23.31) CNV`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-DS-A0VK TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A2QG 
       30.41        35.61        36.76         0.66         5.85         0.99 
TCGA-FU-A3TQ TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.58        21.67         5.52 

$`DEL PEAK 13(10Q23.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
        2.43        40.93        78.31        70.85        42.38         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       69.93        95.08         6.02         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.82         0.62         1.78         7.92         6.94         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3WB 
        1.22         2.17         0.07         1.02         1.45         0.79 
TCGA-FU-A3YQ TCGA-HG-A2PA 
        3.48        25.41 

      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                           0.66                            0.07 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                          36.76                          177.04 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                           5.85                            4.47 
[1] "0.7 - 36.8 (5.8)"  "0.1 - 177.0 (4.5)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-HM-A3JK 
      "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-HM-A3JK 
      "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
      "DEL PEAK 13(10Q23.31) CNV" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"       "DEL PEAK 13(10Q23.31) CNV" 
                     TCGA-HM-A3JK 
      "DEL PEAK 13(10Q23.31) CNV" 
[1] "hr=" "6.5"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV          4    6
  DEL PEAK 13(10Q23.31) WILD-TYPE    9   23
     clus
vv    DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  NO                          4                               9
  YES                         6                              23
D37V4, continuous
D37V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV          4    4
  DEL PEAK 13(10Q23.31) WILD-TYPE   19   10
    clus
vv   DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  M0                         4                              19
  MX                         4                              10
D37V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV          3    6
  DEL PEAK 13(10Q23.31) WILD-TYPE   21    8
    clus
vv   DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  N0                         3                              21
  N1                         6                               8
D37V7, continuous
D37V8, continuous

Clustering(38) Variable = Del Peak 14(10q26.3)
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(10Q26.3) CNV        6  2
  DEL PEAK 14(10Q26.3) WILD-TYPE 28  5
      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                             8                             33 
      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                             2                              5 
$`DEL PEAK 14(10Q26.3) CNV`
TCGA-C5-A1MI TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A3NI TCGA-FU-A3TQ 
       35.61         0.66         5.85         0.99         1.45         1.58 
TCGA-HM-A3JJ TCGA-HM-A3JK 
       21.67         5.52 

$`DEL PEAK 14(10Q26.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT 
       36.76         2.66        69.93        95.08         6.02         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H6 
        1.74         1.32         0.82         0.62         1.78         7.92 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.94         1.22         1.22         2.17         0.07         1.02 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA 
        0.79         3.48        25.41 

      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                          0.66                           0.07 
      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                         35.61                         177.04 
      DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE 
                          3.55                           6.02 
[1] "0.7 - 35.6 (3.5)"  "0.1 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
      "DEL PEAK 14(10Q26.3) CNV" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 14(10Q26.3) CNV"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-HM-A3JK 
      "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
      "DEL PEAK 14(10Q26.3) CNV" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 14(10Q26.3) CNV"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-HM-A3JK 
      "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
      "DEL PEAK 14(10Q26.3) CNV" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 14(10Q26.3) CNV"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 14(10Q26.3) WILD-TYPE" "DEL PEAK 14(10Q26.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 14(10Q26.3) WILD-TYPE"       "DEL PEAK 14(10Q26.3) CNV" 
                    TCGA-HM-A3JK 
      "DEL PEAK 14(10Q26.3) CNV" 
[1] "hr=" "6.7"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(10Q26.3) CNV          4    5
  DEL PEAK 14(10Q26.3) WILD-TYPE    9   24
     clus
vv    DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE
  NO                         4                              9
  YES                        5                             24
D38V4, continuous
D38V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(10Q26.3) CNV          2    5
  DEL PEAK 14(10Q26.3) WILD-TYPE   21    9
    clus
vv   DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE
  M0                        2                             21
  MX                        5                              9
D38V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(10Q26.3) CNV          2    6
  DEL PEAK 14(10Q26.3) WILD-TYPE   22    8
    clus
vv   DEL PEAK 14(10Q26.3) CNV DEL PEAK 14(10Q26.3) WILD-TYPE
  N0                        2                             22
  N1                        6                              8
D38V7, continuous
D38V8, continuous

Clustering(39) Variable = Del Peak 15(11p15.1)
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(11P15.1) CNV       12  3
  DEL PEAK 15(11P15.1) WILD-TYPE 22  4
      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                            15                             26 
      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                             3                              4 
$`DEL PEAK 15(11P15.1) CNV`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VK 
       49.48       177.04         5.46        35.61        70.85        36.76 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 
       69.93        95.08         0.26         0.66         1.78         5.85 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3WB 
        1.22         1.45         0.79 

$`DEL PEAK 15(11P15.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       30.41        36.56        67.46        53.13         2.43        40.93 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       78.31        42.38         2.66         6.02         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG 
        0.82         0.62         7.92         6.94         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3YQ TCGA-HG-A2PA 
        2.17         0.07         1.02         1.58         3.48        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK 
       21.67         5.52 

      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                        177.04                          78.31 
      DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE 
                          5.85                           4.50 
[1] "0.3 - 177.0 (5.8)" "0.1 - 78.3 (4.5)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 15(11P15.1) CNV"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 15(11P15.1) CNV"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 15(11P15.1) CNV"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 15(11P15.1) WILD-TYPE"       "DEL PEAK 15(11P15.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
      "DEL PEAK 15(11P15.1) CNV" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 15(11P15.1) WILD-TYPE" "DEL PEAK 15(11P15.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 15(11P15.1) WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11P15.1) CNV          4   11
  DEL PEAK 15(11P15.1) WILD-TYPE    9   18
     clus
vv    DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE
  NO                         4                              9
  YES                       11                             18
D39V4, continuous
D39V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11P15.1) CNV          9    5
  DEL PEAK 15(11P15.1) WILD-TYPE   14    9
    clus
vv   DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE
  M0                        9                             14
  MX                        5                              9
D39V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11P15.1) CNV          8    6
  DEL PEAK 15(11P15.1) WILD-TYPE   16    8
    clus
vv   DEL PEAK 15(11P15.1) CNV DEL PEAK 15(11P15.1) WILD-TYPE
  N0                        8                             16
  N1                        6                              8
D39V7, continuous
D39V8, continuous

Clustering(40) Variable = Del Peak 16(11q25)
D40V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 16(11Q25) CNV       21  6
  DEL PEAK 16(11Q25) WILD-TYPE 13  1
      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                          27                           14 
      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                           6                            1 
$`DEL PEAK 16(11Q25) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
       35.61         2.43        78.31        70.85        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
       69.93        95.08         6.02         0.26         1.32         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        1.78         5.85         6.94         1.22         0.07         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HM-A3JJ 
        1.58         0.79        21.67 

$`DEL PEAK 16(11Q25) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       36.56        40.93        42.38         1.74         0.82         0.62 
TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3YQ 
        7.92         1.22         0.99         2.17         1.02         3.48 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                        0.07                         0.62 
      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                      177.04                        42.38 
      DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE 
                       6.020                        2.825 
[1] "0.1 - 177.0 (6.0)" "0.6 - 42.4 (2.8)" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 16(11Q25) WILD-TYPE" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-HM-A3JK 
"DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 16(11Q25) WILD-TYPE" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-HM-A3JK 
"DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 16(11Q25) WILD-TYPE" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
      "DEL PEAK 16(11Q25) CNV"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
      "DEL PEAK 16(11Q25) CNV" "DEL PEAK 16(11Q25) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"DEL PEAK 16(11Q25) WILD-TYPE"       "DEL PEAK 16(11Q25) CNV" 
                  TCGA-HM-A3JK 
"DEL PEAK 16(11Q25) WILD-TYPE" 
[1] "hr=" "1.5"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 16(11Q25) CNV          9   19
  DEL PEAK 16(11Q25) WILD-TYPE    4   10
     clus
vv    DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE
  NO                       9                            4
  YES                     19                           10
D40V4, continuous
D40V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 16(11Q25) CNV         16    9
  DEL PEAK 16(11Q25) WILD-TYPE    7    5
    clus
vv   DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE
  M0                     16                            7
  MX                      9                            5
D40V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 16(11Q25) CNV         15   10
  DEL PEAK 16(11Q25) WILD-TYPE    9    4
    clus
vv   DEL PEAK 16(11Q25) CNV DEL PEAK 16(11Q25) WILD-TYPE
  N0                     15                            9
  N1                     10                            4
D40V7, continuous
D40V8, continuous

Clustering(41) Variable = Del Peak 17(13q13.3)
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(13Q13.3) CNV       12  3
  DEL PEAK 17(13Q13.3) WILD-TYPE 22  4
      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                            15                             26 
      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                             3                              4 
$`DEL PEAK 17(13Q13.3) CNV`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VM 
       49.48        30.41         5.46        35.61        70.85        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3NI 
       95.08         0.26         0.66         5.85         1.22         1.45 
TCGA-FU-A3TQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.58        25.41        21.67 

$`DEL PEAK 17(13Q13.3) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       36.56       177.04        67.46        53.13         2.43        40.93 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ 
       78.31        42.38        36.76         2.66         6.02         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 
        1.32         0.82         0.62         1.78         7.92         6.94 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3WB 
        1.22         0.99         2.17         0.07         1.02         0.79 
TCGA-FU-A3YQ TCGA-HM-A3JK 
        3.48         5.52 

      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                         95.08                         177.04 
      DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE 
                         21.67                           3.07 
[1] "0.3 - 95.1 (21.7)" "0.1 - 177.0 (3.1)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 17(13Q13.3) CNV" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q13.3) WILD-TYPE"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 17(13Q13.3) WILD-TYPE" "DEL PEAK 17(13Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
      "DEL PEAK 17(13Q13.3) CNV"       "DEL PEAK 17(13Q13.3) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 17(13Q13.3) WILD-TYPE" 
[1] "hr=" "1"  
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q13.3) CNV          5   11
  DEL PEAK 17(13Q13.3) WILD-TYPE    8   18
     clus
vv    DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE
  NO                         5                              8
  YES                       11                             18
D41V4, continuous
D41V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q13.3) CNV          9    5
  DEL PEAK 17(13Q13.3) WILD-TYPE   14    9
    clus
vv   DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE
  M0                        9                             14
  MX                        5                              9
D41V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q13.3) CNV          7    7
  DEL PEAK 17(13Q13.3) WILD-TYPE   17    7
    clus
vv   DEL PEAK 17(13Q13.3) CNV DEL PEAK 17(13Q13.3) WILD-TYPE
  N0                        7                             17
  N1                        7                              7
D41V7, continuous
D41V8, continuous

Clustering(42) Variable = Del Peak 18(14q32.31)
D42V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 18(14Q32.31) CNV        4  0
  DEL PEAK 18(14Q32.31) WILD-TYPE 30  7
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                              4                              37 
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                              0                               7 
$`DEL PEAK 18(14Q32.31) CNV`
TCGA-C5-A1MF TCGA-EA-A3HQ TCGA-EA-A43B TCGA-FU-A23L 
       53.13         1.74         1.78         1.22 

$`DEL PEAK 18(14Q32.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT 
       36.76         2.66        69.93        95.08         6.02         0.26 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A1H6 
        1.32         0.82         0.62         0.66         5.85         7.92 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.94         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         1.58         0.79         3.48        25.41        21.67 
TCGA-HM-A3JK 
        5.52 

      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                           1.22                            0.07 
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                          53.13                          177.04 
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                           1.76                            5.85 
[1] "1.2 - 53.1 (1.8)"  "0.1 - 177.0 (5.8)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
      "DEL PEAK 18(14Q32.31) CNV" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"       "DEL PEAK 18(14Q32.31) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
      "DEL PEAK 18(14Q32.31) CNV" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"       "DEL PEAK 18(14Q32.31) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
      "DEL PEAK 18(14Q32.31) CNV" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"       "DEL PEAK 18(14Q32.31) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
      "DEL PEAK 18(14Q32.31) CNV" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"       "DEL PEAK 18(14Q32.31) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BI                      TCGA-C5-A1BK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1M5 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
      "DEL PEAK 18(14Q32.31) CNV" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MK                      TCGA-C5-A1MN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A2LY                      TCGA-DR-A0ZL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A0VK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VL                      TCGA-DS-A0VM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VN                      TCGA-DS-A3LQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"       "DEL PEAK 18(14Q32.31) CNV" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EX-A1H5 
      "DEL PEAK 18(14Q32.31) CNV" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H6                      TCGA-EX-A3L1 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"       "DEL PEAK 18(14Q32.31) CNV" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HG-A2PA                      TCGA-HM-A3JJ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" 
[1] "hr="     "7.5e+07"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) CNV          1    3
  DEL PEAK 18(14Q32.31) WILD-TYPE   12   26
     clus
vv    DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  NO                          1                              12
  YES                         3                              26
D42V4, continuous
[1] "Remove cluster labels:"    "DEL PEAK 18(14Q32.31) CNV"
clus
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                              1                              13 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-FU-A2QG 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3EO                      TCGA-FU-A3HY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TQ                      TCGA-FU-A3WB 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" 
D42V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) CNV          2    2
  DEL PEAK 18(14Q32.31) WILD-TYPE   21   12
    clus
vv   DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  M0                         2                              21
  MX                         2                              12
D42V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) CNV          4    0
  DEL PEAK 18(14Q32.31) WILD-TYPE   20   14
    clus
vv   DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  N0                         4                              20
  N1                         0                              14
D42V7, continuous
D42V8, continuous

Clustering(43) Variable = Del Peak 19(15q15.1)
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(15Q15.1) CNV        6  2
  DEL PEAK 19(15Q15.1) WILD-TYPE 28  5
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                             8                             33 
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                             2                              5 
$`DEL PEAK 19(15Q15.1) CNV`
TCGA-BI-A0VS TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L 
       30.41        40.93        70.85         0.66         1.78         1.22 
TCGA-FU-A3HY TCGA-HM-A3JJ 
        0.07        21.67 

$`DEL PEAK 19(15Q15.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       35.61         2.43        78.31        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       69.93        95.08         6.02         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.82         0.62         5.85         7.92         6.94         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB 
        0.99         2.17         1.02         1.45         1.58         0.79 
TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JK 
        3.48        25.41         5.52 

      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                          0.07                           0.26 
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                         70.85                         177.04 
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                        11.725                          5.520 
[1] "0.1 - 70.8 (11.7)" "0.3 - 177.0 (5.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 19(15Q15.1) CNV" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 19(15Q15.1) CNV" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 19(15Q15.1) CNV" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 19(15Q15.1) CNV" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 19(15Q15.1) CNV" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 19(15Q15.1) CNV" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 19(15Q15.1) WILD-TYPE"       "DEL PEAK 19(15Q15.1) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" 
[1] "hr=" "1.8"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) CNV          2    6
  DEL PEAK 19(15Q15.1) WILD-TYPE   11   23
     clus
vv    DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  NO                         2                             11
  YES                        6                             23
D43V4, continuous
[1] "Remove cluster labels:"   "DEL PEAK 19(15Q15.1) CNV"
clus
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                             2                             12 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-DR-A0ZM 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
D43V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) CNV          4    3
  DEL PEAK 19(15Q15.1) WILD-TYPE   19   11
    clus
vv   DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  M0                        4                             19
  MX                        3                             11
D43V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) CNV          5    2
  DEL PEAK 19(15Q15.1) WILD-TYPE   19   12
    clus
vv   DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  N0                        5                             19
  N1                        2                             12
D43V7, continuous
D43V8, continuous

Clustering(44) Variable = Del Peak 20(16q11.2)
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(16Q11.2) CNV        4  0
  DEL PEAK 20(16Q11.2) WILD-TYPE 30  7
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                             4                             37 
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                             0                              7 
$`DEL PEAK 20(16Q11.2) CNV`
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B TCGA-EX-A1H6 
        0.26         1.32         1.78         7.92 

$`DEL PEAK 20(16Q11.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       42.38        36.76         2.66        69.93        95.08         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.74         0.82         0.62         0.66         5.85         6.94 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         1.58         0.79         3.48        25.41        21.67 
TCGA-HM-A3JK 
        5.52 

      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                          7.92                         177.04 
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                          1.55                           5.85 
[1] "0.3 - 7.9 (1.6)"   "0.1 - 177.0 (5.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 20(16Q11.2) CNV" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" 
[1] "hr="     "9500000"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q11.2) CNV          0    5
  DEL PEAK 20(16Q11.2) WILD-TYPE   13   24
     clus
vv    DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  NO                         0                             13
  YES                        5                             24
D44V4, continuous
D44V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q11.2) CNV          3    1
  DEL PEAK 20(16Q11.2) WILD-TYPE   20   13
    clus
vv   DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  M0                        3                             20
  MX                        1                             13
D44V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q11.2) CNV          4    0
  DEL PEAK 20(16Q11.2) WILD-TYPE   20   14
    clus
vv   DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  N0                        4                             20
  N1                        0                             14
D44V7, continuous
D44V8, continuous

Clustering(45) Variable = Del Peak 21(16q23.1)
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(16Q23.1) CNV        5  0
  DEL PEAK 21(16Q23.1) WILD-TYPE 29  7
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                             5                             36 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                             0                              7 
$`DEL PEAK 21(16Q23.1) CNV`
TCGA-DS-A3LQ TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A3EO TCGA-FU-A3TQ 
        6.02         1.78         7.92         2.17         1.58 

$`DEL PEAK 21(16Q23.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT 
       42.38        36.76         2.66        69.93        95.08         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EX-A1H5 
        1.74         1.32         0.82         0.62         0.66         5.85 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.94         1.22         1.22         0.99         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.45         0.79         3.48        25.41        21.67         5.52 

      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                          1.58                           0.07 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                          7.92                         177.04 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                         2.170                          5.685 
[1] "1.6 - 7.9 (2.2)"   "0.1 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 21(16Q23.1) CNV" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"       "DEL PEAK 21(16Q23.1) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" 
[1] "hr="     "2.8e+07"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV          1    5
  DEL PEAK 21(16Q23.1) WILD-TYPE   12   24
     clus
vv    DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  NO                         1                             12
  YES                        5                             24
D45V4, continuous
[1] "Remove cluster labels:"   "DEL PEAK 21(16Q23.1) CNV"
clus
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                             2                             12 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3HY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
D45V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV          2    3
  DEL PEAK 21(16Q23.1) WILD-TYPE   21   11
    clus
vv   DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  M0                        2                             21
  MX                        3                             11
D45V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV          3    2
  DEL PEAK 21(16Q23.1) WILD-TYPE   21   12
    clus
vv   DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  N0                        3                             21
  N1                        2                             12
D45V7, continuous
D45V8, continuous

Clustering(46) Variable = Del Peak 22(17p12)
D46V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 22(17P12) CNV       10  3
  DEL PEAK 22(17P12) WILD-TYPE 24  4
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          13                           28 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                           3                            4 
$`DEL PEAK 22(17P12) CNV`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VN 
        5.46        67.46        40.93        70.85         2.66        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3EO 
        6.02         0.26         0.66         5.85         6.94         2.17 
TCGA-FU-A3NI 
        1.45 

$`DEL PEAK 22(17P12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41        36.56       177.04        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-EA-A3HQ 
        2.43        78.31        42.38        36.76        69.93         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A23K 
        1.32         0.82         0.62         1.78         7.92         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB 
        1.22         0.99         0.07         1.02         1.58         0.79 
TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48        25.41        21.67         5.52 

      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                        0.26                         0.07 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                       95.08                       177.04 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                        5.85                         4.50 
[1] "0.3 - 95.1 (5.8)"  "0.1 - 177.0 (4.5)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BI                   TCGA-C5-A1BK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1M5 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
      "DEL PEAK 22(17P12) CNV"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EA-A43B                   TCGA-EX-A1H5 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"       "DEL PEAK 22(17P12) CNV" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
      "DEL PEAK 22(17P12) CNV" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV          5    8
  DEL PEAK 22(17P12) WILD-TYPE    8   21
     clus
vv    DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  NO                       5                            8
  YES                      8                           21
D46V4, continuous
D46V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV          8    3
  DEL PEAK 22(17P12) WILD-TYPE   15   11
    clus
vv   DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  M0                      8                           15
  MX                      3                           11
D46V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV          8    3
  DEL PEAK 22(17P12) WILD-TYPE   16   11
    clus
vv   DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  N0                      8                           16
  N1                      3                           11
D46V7, continuous
D46V8, continuous

Clustering(47) Variable = Del Peak 23(17q25.3)
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(17Q25.3) CNV        6  3
  DEL PEAK 23(17Q25.3) WILD-TYPE 28  4
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             9                             32 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             3                              4 
$`DEL PEAK 23(17Q25.3) CNV`
TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR 
        5.46        40.93        36.76        95.08         0.26         1.32 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.07         1.45         1.58 

$`DEL PEAK 23(17Q25.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
       35.61         2.43        78.31        70.85        42.38         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
       69.93         6.02         1.74         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L 
        1.78         5.85         7.92         6.94         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA 
        0.99         2.17         1.02         0.79         3.48        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK 
       21.67         5.52 

      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                          0.07                           0.62 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                         95.08                         177.04 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                         1.580                          5.935 
[1] "0.1 - 95.1 (1.6)"  "0.6 - 177.0 (5.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 23(17Q25.3) CNV"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 23(17Q25.3) CNV"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 23(17Q25.3) CNV"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" 
[1] "hr=" "3"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) CNV          3    6
  DEL PEAK 23(17Q25.3) WILD-TYPE   10   23
     clus
vv    DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  NO                         3                             10
  YES                        6                             23
D47V4, continuous
D47V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) CNV          4    3
  DEL PEAK 23(17Q25.3) WILD-TYPE   19   11
    clus
vv   DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  M0                        4                             19
  MX                        3                             11
D47V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) CNV          3    4
  DEL PEAK 23(17Q25.3) WILD-TYPE   21   10
    clus
vv   DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  N0                        3                             21
  N1                        4                             10
D47V7, continuous
D47V8, continuous

Clustering(48) Variable = Del Peak 24(19p13.3)
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(19P13.3) CNV        7  3
  DEL PEAK 24(19P13.3) WILD-TYPE 27  4
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            10                             31 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                             3                              4 
$`DEL PEAK 24(19P13.3) CNV`
TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DS-A0VM TCGA-DS-A0VN 
        5.46        53.13        35.61        40.93        69.93        95.08 
TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L 
        0.26         0.66         1.78         1.22 

$`DEL PEAK 24(19P13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK 
       49.48        30.41        36.56       177.04        67.46         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ 
       78.31        70.85        42.38        36.76         2.66         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A1H6 
        1.74         1.32         0.82         0.62         5.85         7.92 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.94         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         1.58         0.79         3.48        25.41        21.67 
TCGA-HM-A3JK 
        5.52 

      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                         95.08                         177.04 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                        20.535                          5.520 
[1] "0.3 - 95.1 (20.5)" "0.1 - 177.0 (5.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
      "DEL PEAK 24(19P13.3) CNV" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
[1] "hr=" "1.5"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV          5    6
  DEL PEAK 24(19P13.3) WILD-TYPE    8   23
     clus
vv    DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  NO                         5                              8
  YES                        6                             23
D48V4, continuous
D48V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV          6    2
  DEL PEAK 24(19P13.3) WILD-TYPE   17   12
    clus
vv   DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  M0                        6                             17
  MX                        2                             12
D48V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV          6    2
  DEL PEAK 24(19P13.3) WILD-TYPE   18   12
    clus
vv   DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  N0                        6                             18
  N1                        2                             12
D48V7, continuous
D48V8, continuous

Clustering(49) Variable = Del Peak 25(20p12.1)
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(20P12.1) CNV        6  0
  DEL PEAK 25(20P12.1) WILD-TYPE 28  7
      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                             6                             35 
      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                             0                              7 
$`DEL PEAK 25(20P12.1) CNV`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-EA-A1QT TCGA-EX-A1H6 TCGA-FU-A3EO TCGA-FU-A3HY 
       49.48       177.04         0.26         7.92         2.17         0.07 

$`DEL PEAK 25(20P12.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       30.41        36.56         5.46        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        69.93        95.08         6.02         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.82         0.62         0.66         1.78         5.85         6.94 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         1.22         0.99         1.02         1.45         1.58 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.79         3.48        25.41        21.67         5.52 

      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                          0.07                           0.62 
      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                        177.04                          95.08 
      DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE 
                         5.045                          5.520 
[1] "0.1 - 177.0 (5.0)" "0.6 - 95.1 (5.5)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 25(20P12.1) WILD-TYPE"       "DEL PEAK 25(20P12.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 25(20P12.1) WILD-TYPE"       "DEL PEAK 25(20P12.1) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 25(20P12.1) WILD-TYPE"       "DEL PEAK 25(20P12.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 25(20P12.1) WILD-TYPE"       "DEL PEAK 25(20P12.1) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 25(20P12.1) WILD-TYPE"       "DEL PEAK 25(20P12.1) CNV" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 25(20P12.1) WILD-TYPE"       "DEL PEAK 25(20P12.1) CNV" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 25(20P12.1) CNV" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 25(20P12.1) WILD-TYPE" "DEL PEAK 25(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 25(20P12.1) WILD-TYPE" 
[1] "hr="     "2.4e+08"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(20P12.1) CNV          0    7
  DEL PEAK 25(20P12.1) WILD-TYPE   13   22
     clus
vv    DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE
  NO                         0                             13
  YES                        7                             22
D49V4, continuous
D49V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(20P12.1) CNV          2    4
  DEL PEAK 25(20P12.1) WILD-TYPE   21   10
    clus
vv   DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE
  M0                        2                             21
  MX                        4                             10
D49V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(20P12.1) CNV          4    2
  DEL PEAK 25(20P12.1) WILD-TYPE   20   12
    clus
vv   DEL PEAK 25(20P12.1) CNV DEL PEAK 25(20P12.1) WILD-TYPE
  N0                        4                             20
  N1                        2                             12
D49V7, continuous
D49V8, continuous

Clustering(50) Variable = Del Peak 26(21q21.1)
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(21Q21.1) CNV       10  1
  DEL PEAK 26(21Q21.1) WILD-TYPE 24  6
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                            11                             30 
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                             1                              6 
$`DEL PEAK 26(21Q21.1) CNV`
TCGA-BI-A0VS TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
       30.41        70.85         2.66         0.26         1.32         0.66 
TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HM-A3JJ 
        6.94         1.22         0.07         1.45        21.67 

$`DEL PEAK 26(21Q21.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        40.93        78.31        42.38        36.76 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       69.93        95.08         6.02         1.74         0.82         0.62 
TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        1.78         5.85         7.92         1.22         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02         1.58         0.79         3.48        25.41         5.52 

      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                          0.07                           0.62 
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                         70.85                         177.04 
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                         1.450                          5.935 
[1] "0.1 - 70.8 (1.4)"  "0.6 - 177.0 (5.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
      "DEL PEAK 26(21Q21.1) CNV" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 26(21Q21.1) WILD-TYPE"       "DEL PEAK 26(21Q21.1) CNV" 
                    TCGA-HM-A3JK 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
[1] "hr=" "1"  
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(21Q21.1) CNV          1   10
  DEL PEAK 26(21Q21.1) WILD-TYPE   12   19
     clus
vv    DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE
  NO                         1                             12
  YES                       10                             19
D50V4, continuous
[1] "Remove cluster labels:"   "DEL PEAK 26(21Q21.1) CNV"
clus
      DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE 
                             1                             13 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TQ                     TCGA-FU-A3WB 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
D50V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(21Q21.1) CNV          7    4
  DEL PEAK 26(21Q21.1) WILD-TYPE   16   10
    clus
vv   DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE
  M0                        7                             16
  MX                        4                             10
D50V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(21Q21.1) CNV          8    3
  DEL PEAK 26(21Q21.1) WILD-TYPE   16   11
    clus
vv   DEL PEAK 26(21Q21.1) CNV DEL PEAK 26(21Q21.1) WILD-TYPE
  N0                        8                             16
  N1                        3                             11
D50V7, continuous
D50V8, continuous

Clustering(51) Variable = Del Peak 27(Xp11.3)
D51V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 27(XP11.3) CNV       12  2
  DEL PEAK 27(XP11.3) WILD-TYPE 22  5
      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                           14                            27 
      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                            2                             5 
$`DEL PEAK 27(XP11.3) CNV`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MN TCGA-DS-A0VN 
       30.41       177.04         5.46        53.13        40.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B TCGA-EX-A1H5 TCGA-FU-A2QG 
        6.02         0.26         1.32         1.78         5.85         0.99 
TCGA-FU-A3HY TCGA-FU-A3NI 
        0.07         1.45 

$`DEL PEAK 27(XP11.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        36.56        67.46        35.61         2.43        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A3HQ 
       70.85        42.38        36.76         2.66        69.93         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K 
        0.82         0.62         0.66         7.92         6.94         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.22         2.17         1.02         1.58         0.79         3.48 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
       25.41        21.67         5.52 

      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                         0.07                          0.62 
      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                       177.04                         78.31 
      DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE 
                        5.655                         5.520 
[1] "0.1 - 177.0 (5.7)" "0.6 - 78.3 (5.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK 27(XP11.3) CNV"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK 27(XP11.3) CNV"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK 27(XP11.3) CNV"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK 27(XP11.3) CNV"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A1BI                    TCGA-C5-A1BK 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A1BN                    TCGA-C5-A1M5 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MK                    TCGA-C5-A1MN 
"DEL PEAK 27(XP11.3) WILD-TYPE"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-C5-A2LY                    TCGA-DR-A0ZL 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A0VK 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VL                    TCGA-DS-A0VM 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VN                    TCGA-DS-A3LQ 
      "DEL PEAK 27(XP11.3) CNV"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EX-A1H5 
      "DEL PEAK 27(XP11.3) CNV"       "DEL PEAK 27(XP11.3) CNV" 
                   TCGA-EX-A1H6                    TCGA-EX-A3L1 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
      "DEL PEAK 27(XP11.3) CNV" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-HG-A2PA                    TCGA-HM-A3JJ 
"DEL PEAK 27(XP11.3) WILD-TYPE" "DEL PEAK 27(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 27(XP11.3) WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XP11.3) CNV          6    8
  DEL PEAK 27(XP11.3) WILD-TYPE    7   21
     clus
vv    DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE
  NO                        6                             7
  YES                       8                            21
D51V4, continuous
D51V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XP11.3) CNV          6    5
  DEL PEAK 27(XP11.3) WILD-TYPE   17    9
    clus
vv   DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE
  M0                       6                            17
  MX                       5                             9
D51V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XP11.3) CNV          8    4
  DEL PEAK 27(XP11.3) WILD-TYPE   16   10
    clus
vv   DEL PEAK 27(XP11.3) CNV DEL PEAK 27(XP11.3) WILD-TYPE
  N0                       8                            16
  N1                       4                            10
D51V7, continuous
D51V8, continuous

Clustering(52) Variable = Del Peak 28(Xq21.33)
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(XQ21.33) CNV        6  5
  DEL PEAK 28(XQ21.33) WILD-TYPE 28  2
      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                            11                             30 
      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                             5                              2 
$`DEL PEAK 28(XQ21.33) CNV`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN 
        5.46        67.46         2.43        40.93        36.76        95.08 
TCGA-EA-A1QT TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A2QG TCGA-FU-A3HY 
        0.26         5.85         7.92         0.99         0.07 

$`DEL PEAK 28(XQ21.33) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41        36.56       177.04        53.13        35.61 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       78.31        70.85        42.38         2.66        69.93         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        1.74         1.32         0.82         0.62         0.66         1.78 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI 
        6.94         1.22         1.22         2.17         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.58         0.79         3.48        25.41        21.67         5.52 

      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                          0.07                           0.62 
      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                         95.08                         177.04 
      DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE 
                          5.85                           4.50 
[1] "0.1 - 95.1 (5.8)"  "0.6 - 177.0 (4.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 28(XQ21.33) CNV"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "DEL PEAK 28(XQ21.33) CNV"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 28(XQ21.33) WILD-TYPE"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 28(XQ21.33) WILD-TYPE"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 28(XQ21.33) CNV"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "DEL PEAK 28(XQ21.33) CNV"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 28(XQ21.33) WILD-TYPE"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 28(XQ21.33) WILD-TYPE"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BI                     TCGA-C5-A1BK 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1M5 
      "DEL PEAK 28(XQ21.33) CNV"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MK                     TCGA-C5-A1MN 
      "DEL PEAK 28(XQ21.33) CNV"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 28(XQ21.33) WILD-TYPE"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EX-A1H5 
"DEL PEAK 28(XQ21.33) WILD-TYPE"       "DEL PEAK 28(XQ21.33) CNV" 
                    TCGA-EX-A1H6                     TCGA-EX-A3L1 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
      "DEL PEAK 28(XQ21.33) CNV" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JJ 
"DEL PEAK 28(XQ21.33) WILD-TYPE" "DEL PEAK 28(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 28(XQ21.33) WILD-TYPE" 
[1] "hr=" "5.5"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(XQ21.33) CNV          5    6
  DEL PEAK 28(XQ21.33) WILD-TYPE    8   23
     clus
vv    DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE
  NO                         5                              8
  YES                        6                             23
D52V4, continuous
D52V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(XQ21.33) CNV          4    3
  DEL PEAK 28(XQ21.33) WILD-TYPE   19   11
    clus
vv   DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE
  M0                        4                             19
  MX                        3                             11
D52V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(XQ21.33) CNV          5    3
  DEL PEAK 28(XQ21.33) WILD-TYPE   19   11
    clus
vv   DEL PEAK 28(XQ21.33) CNV DEL PEAK 28(XQ21.33) WILD-TYPE
  N0                        5                             19
  N1                        3                             11
D52V7, continuous
D52V8, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V4 
                 "NUMBERPACKYEARSSMOKED" 
                                      V5 
                    "DISTANT.METASTASIS" 
                                      V6 
                 "LYMPH.NODE.METASTASIS" 
                                      V7 
                 "NUMBER.OF.LYMPH.NODES" 
                                      V8 
                       "TUMOR.STAGECODE" 
> q(save="no")
