
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/423607/GBM-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/GBM-TP/3351055/GBM-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=574, in cluster file=284, common to both=275
[1]  13 275
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            73            202 
  EGFR MUTATED EGFR WILD-TYPE 
            73            202 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              31              244 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              31              244 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             5            270 
  BRAF MUTATED BRAF WILD-TYPE 
             5            270 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
            13            262 
  IDH1 MUTATED IDH1 WILD-TYPE 
            13            262 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            77            198 
  TP53 MUTATED TP53 WILD-TYPE 
            77            198 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            85            190 
  PTEN MUTATED PTEN WILD-TYPE 
            85            190 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              29              246 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              29              246 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           23           252 
  RB1 MUTATED RB1 WILD-TYPE 
           23           252 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             5            270 
  PRB2 MUTATED PRB2 WILD-TYPE 
             5            270 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           29           246 
  NF1 MUTATED NF1 WILD-TYPE 
           29           246 
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              5             270 
  CDC27 MUTATED CDC27 WILD-TYPE 
              5             270 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             263 
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             263 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             267 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             267 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "BATCHNUMBER"                           

Input Data has 12 rows and 275 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
         144           86          447           76          393          465 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
         469          492           NA            8          123            3 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
         691          988          320          570          701          327 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
          NA          280           NA           71           NA          359 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
         389          263           97          166           NA          161 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
          NA          579           95            7           67         1642 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
        1228         1126          866          454          556          214 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
         118            6          378          684           10          314 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
         359          455          375           98          136          293 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
          62          717          285          678          594          163 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
          82           65           28          279          271          204 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
         218          699          178          165          637          413 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
          33           23          149          282           86          259 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
         181          207          133           13          285          341 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
         107          254          138          268          273          260 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
         155           83          114          186          138          119 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
         236          163           44           15          224          252 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
         391          145           47          145          151          478 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
         426          438           49          316          734           80 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 
         323          427          351          333         1050          357 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
         398           98           61          364           29          701 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
          68          342          418           41          164           88 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
         879           24           42         1788         1245          542 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
         232          217          532           12          103          300 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
         119          130          882          772          153          294 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
         148          229            5          124          501          213 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
         136          202          343          244          567          144 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
         242           54          164          161          165          422 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
         953          286          452          167          269           37 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
          48          241           70          146          504           NA 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
         555         1008          648          914          427          350 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
         752          316          316          489          231           87 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
         438          479           77           36           94           20 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
         145          222          160          119          275          473 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
          77          358          298          432          237          415 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
         128          259          319          165          467            3 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
         593           36          142          386          515          372 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
         632          456          485          269          270          224 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
         400          338          112          383          356          330 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
         165           26          406          272          290           30 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
         135          183            6          351          235          105 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
         533          131          436          227          145          138 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
         535           94          111          278         1458           77 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
         328          507          100           82          346          519 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
         253          637          147          153            7          281 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
         234          236           49          538            2 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=157,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=229,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 275 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = EGFR MUTATION ANALYSIS
D1V1, survival
                sevent
clus2              0   1
  EGFR MUTATED    20  53
  EGFR WILD-TYPE  80 122
  EGFR MUTATED EGFR WILD-TYPE 
            73            202 
  EGFR MUTATED EGFR WILD-TYPE 
            53            122 
$`EGFR MUTATED`
TCGA-02-0003 TCGA-02-2485 TCGA-06-0137 TCGA-06-0142 TCGA-06-0154 TCGA-06-0155 
        4.73        15.42        23.05         2.20        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0174 TCGA-06-0185 TCGA-06-0237 TCGA-06-0649 
        3.19         5.46         2.20        37.02        10.32         2.04 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 
       23.57        22.29         2.70         2.14         0.92         8.91 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-1804 TCGA-06-2557 TCGA-06-2561 
        7.17        22.98         5.85        13.58         1.08         9.27 
TCGA-06-2563 TCGA-06-2565 TCGA-06-2567 TCGA-06-5413 TCGA-06-5856 TCGA-06-6695 
        8.52         6.81         4.37         8.81         3.75         8.28 
TCGA-06-6700 TCGA-12-0616 TCGA-12-0619 TCGA-12-3650 TCGA-12-3652 TCGA-14-0786 
        4.77        14.40        10.39        10.95        34.52        23.05 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-1395 TCGA-14-1456 TCGA-14-1823 
       11.24        13.74         1.35         1.38        40.93        17.82 
TCGA-14-1829 TCGA-14-2554 TCGA-15-0742 TCGA-16-1045 TCGA-19-1790 TCGA-19-2620 
        7.13        17.49         9.86        29.00         5.03         4.87 
TCGA-19-2624 TCGA-19-2625 TCGA-26-1439 TCGA-26-5139 TCGA-27-1831 TCGA-27-1838 
        0.16         4.08        13.87         1.58        16.57        11.51 
TCGA-27-2528 TCGA-28-1747 TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 TCGA-32-1970 
       15.75         2.53         9.04         2.53         9.80        15.35 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2632 TCGA-76-4926 TCGA-76-4927 
       19.50         4.67        16.93         8.84         4.54        17.59 
TCGA-76-4931 TCGA-76-6191 TCGA-76-6282 TCGA-76-6656 TCGA-76-6661 TCGA-81-5910 
        9.14        16.67        17.06         4.83         0.23         1.61 
TCGA-81-5911 
       17.69 

$`EGFR WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 
        2.83        14.70         2.50        12.92        15.29        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 
        2.70         0.26         4.04         0.10        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0145 
       10.52        18.74        10.75         0.20         9.21         2.33 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
       46.59        11.80        10.65         5.29        11.41        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0178 TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 
        3.12         0.23        53.98        40.37        28.47        14.93 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
       18.28         7.04         3.88         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        0.33        11.80        14.96        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0875 TCGA-06-0877 
        9.63         9.37        19.53         5.36         9.17         6.71 
TCGA-06-0882 TCGA-06-0939 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2564 
        5.42        20.94         0.76         4.90         2.83         5.95 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         5.10         2.73         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
       12.85         4.77         1.55         4.96        15.72        14.01 
TCGA-12-0618 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
        1.61        24.13         2.63        10.62        14.04        11.54 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       11.74        13.08         3.22         2.01        11.97         0.95 
TCGA-14-0787 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1450 
        2.24         5.39         2.89        28.90         0.79        58.78 
TCGA-14-1825 TCGA-14-3476 TCGA-14-4157 TCGA-16-0846 TCGA-16-0861 TCGA-19-1390 
        7.63         0.39         3.39         3.91         4.27        25.38 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        9.67         7.53        16.47         7.00         4.47         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
        5.39         5.29         5.42        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        5.49         8.84         1.22         7.92         2.30         4.80 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
       14.40         1.18         3.09         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 
        5.26         3.91        15.55        11.77        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 
       13.64         4.21         8.52        10.49         5.42         0.10 
TCGA-32-1980 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        1.18        12.69        12.23        20.78        14.99        15.95 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
        8.88         7.36        13.15        11.11         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        7.73         3.45        17.52         4.31        14.33         7.46 
TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        4.77         3.09         3.65        47.93         2.53        10.78 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
        3.29         2.70        11.38         8.32        20.94         5.03 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-87-5896 
        9.24         7.69         7.76         0.07 

  EGFR MUTATED EGFR WILD-TYPE 
          0.16           0.07 
  EGFR MUTATED EGFR WILD-TYPE 
         40.93          58.78 
  EGFR MUTATED EGFR WILD-TYPE 
          8.91           7.76 
[1] "0.2 - 40.9 (8.9)" "0.1 - 58.8 (7.8)"
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
                cls
clus               0   1
  EGFR MUTATED    22  51
  EGFR WILD-TYPE  78 124
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     22   51
  EGFR WILD-TYPE   78  124
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           22             78
  MALE             51            124
D1V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  EGFR MUTATED                               1                   0
  EGFR WILD-TYPE                             5                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  EGFR MUTATED                                72
  EGFR WILD-TYPE                             193
D1V5, multiclass
                                 clus
vv                                EGFR MUTATED EGFR WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1              5
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           72            193
D1V6, binary
                cls
clus               0   1
  EGFR MUTATED    51  22
  EGFR WILD-TYPE 133  69
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     51   22
  EGFR WILD-TYPE  133   69
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO            51            133
  YES           22             69

Clustering(2) Variable = PIK3R1 MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2                0   1
  PIK3R1 MUTATED    12  19
  PIK3R1 WILD-TYPE  88 156
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              31              244 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              19              156 
$`PIK3R1 MUTATED`
TCGA-02-0003 TCGA-06-0128 TCGA-06-0129 TCGA-06-0750 TCGA-06-0877 TCGA-06-2562 
        4.73        22.72        32.48         0.92         6.71         2.83 
TCGA-06-6388 TCGA-06-6695 TCGA-12-0688 TCGA-14-0790 TCGA-14-0862 TCGA-14-1456 
        3.91         8.28        24.13        13.74         2.89        40.93 
TCGA-19-2629 TCGA-19-5947 TCGA-19-5951 TCGA-19-5955 TCGA-19-5958 TCGA-26-5139 
       16.47         6.64         8.02         1.78         5.39         1.58 
TCGA-26-6174 TCGA-28-2513 TCGA-32-1991 TCGA-32-2634 TCGA-41-3915 TCGA-74-6573 
        2.30         7.30        16.93         8.88         6.02         3.45 
TCGA-74-6575 TCGA-76-4927 TCGA-76-4929 TCGA-76-6280 TCGA-76-6656 TCGA-76-6657 
       17.52        17.59         3.65        11.38         4.83         5.03 
TCGA-76-6662 
        9.24 

$`PIK3R1 WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        2.83        14.70         2.50        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 
       16.18         2.70         0.26         4.04         0.10        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.05        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        0.23         2.20        53.98        40.37        37.02        28.47 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       14.93        18.28         7.04         3.88         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 
       22.49         0.33        10.32        11.80        14.96        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0875 
       22.29        19.53         5.36         2.70         2.14         9.17 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        8.91         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 
       13.58         1.08         0.76         4.90         9.27         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 
        5.10         2.73         3.75         6.12         4.54         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         0.49         7.36        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        15.72        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
        1.61        10.39         2.63        10.62        14.04        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0813 
       11.97         0.95        23.05         2.24        11.24         1.35 
TCGA-14-0817 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 
        5.39        28.90         0.79         1.38        58.78        17.82 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.13        17.49         0.39         3.39         9.86 
TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 
        3.91         4.27        29.00        25.38         5.03         9.67 
TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 
        4.87         7.53         0.16         4.08         7.00         4.47 
TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5959 TCGA-19-5960 
       11.28        18.64         4.73         7.96         5.29         5.42 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.22         7.92         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.75         2.53         1.18         3.09         0.66         4.77 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.35         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        12.23        20.78        14.99        15.95 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
        8.84         7.36        13.15        11.11         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44         0.20        11.54         7.73 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
        4.31        14.33         7.46         4.77         4.54         3.09 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.14        47.93         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6661 TCGA-76-6663 
        2.70        17.06         8.32        20.94         0.23         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            0.92             0.07 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           40.93            58.78 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            6.71             8.52 
[1] "0.9 - 40.9 (6.7)" "0.1 - 58.8 (8.5)"
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0650 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0875 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-0876       TCGA-06-0877       TCGA-06-0878       TCGA-06-0879 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0881       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2557       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0615       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0688       TCGA-12-0692       TCGA-12-0821       TCGA-12-1597 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-3476       TCGA-14-4157       TCGA-15-0742 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-0861       TCGA-16-1045       TCGA-19-1390 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-2631 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1439 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-26-6173 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1970       TCGA-32-1977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1979       TCGA-32-1980       TCGA-32-1982       TCGA-32-1986 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-2615       TCGA-32-2632       TCGA-32-2634       TCGA-32-2638 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-32-4208       TCGA-32-4209       TCGA-32-4210       TCGA-32-4211 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4213       TCGA-32-4719       TCGA-32-5222       TCGA-41-2571 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-2573       TCGA-41-2575       TCGA-41-3392 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-3393       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-6646       TCGA-74-6573       TCGA-74-6575       TCGA-74-6577 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-74-6578       TCGA-74-6584       TCGA-76-4925       TCGA-76-4926 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-4934       TCGA-76-4935       TCGA-76-6191 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6192       TCGA-76-6193       TCGA-76-6280       TCGA-76-6282 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0650 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0875 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-0876       TCGA-06-0877       TCGA-06-0878       TCGA-06-0879 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0881       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2557       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0615       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0688       TCGA-12-0692       TCGA-12-0821       TCGA-12-1597 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-3476       TCGA-14-4157       TCGA-15-0742 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-0861       TCGA-16-1045       TCGA-19-1390 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-2631 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1439 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-26-6173 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1970       TCGA-32-1977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1979       TCGA-32-1980       TCGA-32-1982       TCGA-32-1986 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-2615       TCGA-32-2632       TCGA-32-2634       TCGA-32-2638 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-32-4208       TCGA-32-4209       TCGA-32-4210       TCGA-32-4211 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4213       TCGA-32-4719       TCGA-32-5222       TCGA-41-2571 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-2573       TCGA-41-2575       TCGA-41-3392 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-3393       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-6646       TCGA-74-6573       TCGA-74-6575       TCGA-74-6577 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-74-6578       TCGA-74-6584       TCGA-76-4925       TCGA-76-4926 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-4934       TCGA-76-4935       TCGA-76-6191 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6192       TCGA-76-6193       TCGA-76-6280       TCGA-76-6282 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0650 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0875 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-0876       TCGA-06-0877       TCGA-06-0878       TCGA-06-0879 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0881       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2557       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0615       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0688       TCGA-12-0692       TCGA-12-0821       TCGA-12-1597 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-2554       TCGA-14-3476       TCGA-14-4157       TCGA-15-0742 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-16-0846       TCGA-16-0861       TCGA-16-1045       TCGA-19-1390 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-2631 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1439 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-26-6173 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1970       TCGA-32-1977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1979       TCGA-32-1980       TCGA-32-1982       TCGA-32-1986 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-2615       TCGA-32-2632       TCGA-32-2634       TCGA-32-2638 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-32-4208       TCGA-32-4209       TCGA-32-4210       TCGA-32-4211 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4213       TCGA-32-4719       TCGA-32-5222       TCGA-41-2571 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-2572       TCGA-41-2573       TCGA-41-2575       TCGA-41-3392 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-3393       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-6646       TCGA-74-6573       TCGA-74-6575       TCGA-74-6577 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-74-6578       TCGA-74-6584       TCGA-76-4925       TCGA-76-4926 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-4932       TCGA-76-4934       TCGA-76-4935       TCGA-76-6191 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6192       TCGA-76-6193       TCGA-76-6280       TCGA-76-6282 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED     9  22
  PIK3R1 WILD-TYPE  91 153
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      9   22
  PIK3R1 WILD-TYPE   91  153
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  FEMALE              9               91
  MALE               22              153
D2V4, continuous
                  vv
clus               GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PIK3R1 MUTATED                               0                   0
  PIK3R1 WILD-TYPE                             6                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PIK3R1 MUTATED                                31
  PIK3R1 WILD-TYPE                             234
D2V5, multiclass
                                 clus
vv                                PIK3R1 MUTATED PIK3R1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                0                6
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM             31              234
D2V6, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED    24   7
  PIK3R1 WILD-TYPE 160  84
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED     24    7
  PIK3R1 WILD-TYPE  160   84
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  NO              24              160
  YES              7               84

Clustering(3) Variable = BRAF MUTATION ANALYSIS
D3V1, survival
                sevent
clus2              0   1
  BRAF MUTATED     2   3
  BRAF WILD-TYPE  98 172
  BRAF MUTATED BRAF WILD-TYPE 
             5            270 
  BRAF MUTATED BRAF WILD-TYPE 
             3            172 
$`BRAF MUTATED`
TCGA-02-0047 TCGA-06-0151 TCGA-06-0185 TCGA-06-0644 TCGA-76-4928 
       14.70        46.59        37.02        12.33         3.09 

$`BRAF WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       16.18         2.70         0.26         4.04         0.10        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       32.48        10.52        18.74        23.05        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.21         2.20         2.33        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19         5.46        10.65         5.29        11.41        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0188 
        3.12         0.23         2.20        53.98        40.37        28.47 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       14.93        18.28         7.04         3.88         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0645 
       22.49         0.33        10.32        11.80        14.96         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       20.94        13.58         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
        2.83         8.52         5.95         6.81         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        15.72        14.01        14.40         1.61        10.39 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       24.13         2.63        10.62        14.04        11.54        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.52        11.74        13.08         3.22         2.01        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.74         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.90         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.93        17.82         7.63         7.13        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.39         9.86         3.91         4.27        29.00        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.03         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         4.47         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.64         4.73         7.96         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
        5.42        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.75         2.53         1.18 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.09         0.66         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.35         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        14.99        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
        8.88         7.36        13.15        11.11         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        7.73         3.45        17.52         4.31        14.33         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.77         4.54        17.59         3.65         9.14        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  BRAF MUTATED BRAF WILD-TYPE 
          3.09           0.07 
  BRAF MUTATED BRAF WILD-TYPE 
         46.59          58.78 
  BRAF MUTATED BRAF WILD-TYPE 
         14.70           7.99 
[1] "3.1 - 46.6 (14.7)" "0.1 - 58.8 (8.0)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "2.5"
D3V2, continuous
D3V3, binary
                cls
clus               0   1
  BRAF MUTATED     2   3
  BRAF WILD-TYPE  98 172
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      2    3
  BRAF WILD-TYPE   98  172
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            2             98
  MALE              3            172
D3V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  BRAF MUTATED                               1                   0
  BRAF WILD-TYPE                             5                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  BRAF MUTATED                                 4
  BRAF WILD-TYPE                             261
D3V5, multiclass
                                 clus
vv                                BRAF MUTATED BRAF WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1              5
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
D3V6, binary
                cls
clus               0   1
  BRAF MUTATED     3   2
  BRAF WILD-TYPE 181  89
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      3    2
  BRAF WILD-TYPE  181   89
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             3            181
  YES            2             89

Clustering(4) Variable = IDH1 MUTATION ANALYSIS
D4V1, survival
                sevent
clus2              0   1
  IDH1 MUTATED    10   3
  IDH1 WILD-TYPE  90 172
  IDH1 MUTATED IDH1 WILD-TYPE 
            13            262 
  IDH1 MUTATED IDH1 WILD-TYPE 
             3            172 
$`IDH1 MUTATED`
TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-2570 TCGA-06-5417 TCGA-06-6389 
       15.29        22.72        32.48         9.37         5.10         7.76 
TCGA-06-6701 TCGA-14-1456 TCGA-14-4157 TCGA-19-2629 TCGA-26-1442 TCGA-27-2521 
        4.96        40.93         3.39        16.47        31.33        10.39 
TCGA-32-4208 
       13.15 

$`IDH1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2485 
        4.73         2.83        14.70         2.50        12.92        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 
       16.18         2.70         0.26         4.04         0.10        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.05        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        0.23         2.20        53.98        40.37        37.02        28.47 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       14.93        18.28         7.04         3.88         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 
       22.49         0.33        10.32        11.80        14.96        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        5.42        20.94        13.58         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
        9.27         2.83         8.52         5.95         6.81         4.37 
TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        0.43        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        3.91         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-08-0386 TCGA-12-0615 
       12.85         4.77         1.55         4.77        15.72        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.40         1.61        10.39        24.13         2.63        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       14.04        11.54        10.95        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.01        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.74         1.35         5.39         2.89        28.90 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        0.79         1.38        58.78        17.82         7.63         7.13 
TCGA-14-2554 TCGA-14-3476 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
       17.49         0.39         9.86         3.91         4.27        29.00 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
       25.38         5.03         9.67         4.87         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         4.47         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.64         4.73         7.96         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        5.42        13.87         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 
       14.40        15.75         2.53         1.18         3.09         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        4.21         8.52        10.49         5.42        15.35         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       19.50         1.18         4.67        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       20.78        14.99        15.95         8.84         8.88         7.36 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       11.11         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.31        14.33         7.46         4.77         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.14        47.93         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

  IDH1 MUTATED IDH1 WILD-TYPE 
          3.39           0.07 
  IDH1 MUTATED IDH1 WILD-TYPE 
         40.93          58.78 
  IDH1 MUTATED IDH1 WILD-TYPE 
         13.15           7.94 
[1] "3.4 - 40.9 (13.2)" "0.1 - 58.8 (7.9)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "IDH1 MUTATED"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "IDH1 MUTATED"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "IDH1 MUTATED"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
[1] "hr=" "5"  
D4V2, continuous
D4V3, binary
                cls
clus               0   1
  IDH1 MUTATED     3  10
  IDH1 WILD-TYPE  97 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      3   10
  IDH1 WILD-TYPE   97  165
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  FEMALE            3             97
  MALE             10            165
D4V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  IDH1 MUTATED                               0                   0
  IDH1 WILD-TYPE                             6                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  IDH1 MUTATED                                13
  IDH1 WILD-TYPE                             252
D4V5, multiclass
                                 clus
vv                                IDH1 MUTATED IDH1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0              6
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           13            252
D4V6, binary
                cls
clus               0   1
  IDH1 MUTATED    13   0
  IDH1 WILD-TYPE 171  91
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED     13    0
  IDH1 WILD-TYPE  171   91
     clus
vv    IDH1 MUTATED IDH1 WILD-TYPE
  NO            13            171
  YES            0             91

Clustering(5) Variable = TP53 MUTATION ANALYSIS
D5V1, survival
                sevent
clus2              0   1
  TP53 MUTATED    36  41
  TP53 WILD-TYPE  64 134
  TP53 MUTATED TP53 WILD-TYPE 
            77            198 
  TP53 MUTATED TP53 WILD-TYPE 
            41            134 
$`TP53 MUTATED`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2483 TCGA-02-2485 TCGA-06-0128 
        4.73         2.83         2.50        15.29        15.42        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 TCGA-06-0195 
       32.48        10.52        40.37        28.47        14.93         7.04 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0743 TCGA-06-0744 
       10.32        11.80        14.96        12.33        22.29        19.53 
TCGA-06-0875 TCGA-06-0876 TCGA-06-2558 TCGA-06-2559 TCGA-06-2563 TCGA-06-2567 
        9.17         8.91         0.76         4.90         8.52         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5417 TCGA-06-5858 TCGA-06-6389 
        0.43         9.37        11.21         5.10         6.12         7.76 
TCGA-06-6694 TCGA-06-6698 TCGA-06-6701 TCGA-12-0618 TCGA-12-0619 TCGA-14-0740 
        7.36         4.77         4.96         1.61        10.39        11.97 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1456 TCGA-14-1825 TCGA-14-4157 
        1.35         5.39        28.90        40.93         7.63         3.39 
TCGA-16-0846 TCGA-19-1390 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-26-1442 
        3.91        25.38         7.53         4.08        16.47        31.33 
TCGA-26-5133 TCGA-26-5136 TCGA-27-1830 TCGA-27-1835 TCGA-27-1836 TCGA-27-1838 
       14.86         1.22         4.80        21.30        30.05        11.51 
TCGA-27-2519 TCGA-27-2521 TCGA-28-1753 TCGA-28-2509 TCGA-28-5207 TCGA-28-5216 
       10.39        10.39         1.18         4.77         9.04        13.64 
TCGA-28-5219 TCGA-32-1970 TCGA-32-2491 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 
        8.52        15.35        12.23         8.88        13.15         3.68 
TCGA-41-2575 TCGA-41-5651 TCGA-74-6573 TCGA-76-4925 TCGA-76-4929 TCGA-76-4934 
        9.53        11.54         3.45         4.77         3.65         2.53 
TCGA-76-6193 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        2.70        20.94         9.24         7.69         7.76 

$`TP53 WILD-TYPE`
TCGA-02-0047 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       14.70        12.92        16.18         2.70         0.26         4.04 
TCGA-06-0126 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
        0.10        18.74        23.05        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.20         2.33        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19         5.46        10.65         5.29        11.41        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0192 
        3.12         0.23         2.20        53.98        37.02        18.28 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0645 
        3.88         0.20        12.43        22.49         0.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0745 
        4.47         9.63         2.04        23.57         9.37         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.70         2.14         0.92         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 TCGA-06-2561 
        5.85         5.42        20.94        13.58         1.08         9.27 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        2.83         5.95         6.81         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 
        8.81         8.98         8.55         2.73         3.75         4.54 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 
        3.91         5.36         1.45         0.49         8.28        12.85 
TCGA-06-6699 TCGA-06-6700 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0688 
        1.55         4.77        15.72        14.01        14.40        24.13 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        2.63        10.62        14.04        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0786 
       11.74        13.08         3.22         2.01         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0862 TCGA-14-1043 TCGA-14-1395 
        2.24        11.24        13.74         2.89         0.79         1.38 
TCGA-14-1450 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-15-0742 
       58.78        17.82         7.13        17.49         0.39         9.86 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 
        4.27        29.00         5.03         9.67         4.87         0.16 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.47         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         5.39         5.29         5.42 
TCGA-26-1439 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 
       13.87         9.40         5.49         8.84         1.58         7.92 
TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1837 
        2.30        16.57         9.86        18.25        33.14        14.04 
TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       24.72        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1747 TCGA-28-2499 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        2.53         3.09         0.66         7.30         5.26         3.91 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
        4.21        10.49         5.42         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
        4.67        12.69        16.93        20.78        14.99        15.95 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        8.84         7.36        11.11        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 
        5.42         0.85        13.35         8.94         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        6.02         0.20         7.73        17.52         4.31        14.33 
TCGA-74-6584 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 TCGA-76-4932 
        7.46         4.54        17.59         3.09         9.14        47.93 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29        11.38        17.06         8.32 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        4.83         5.03         0.23         1.61        17.69         0.07 

  TP53 MUTATED TP53 WILD-TYPE 
          0.43           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         40.93          58.78 
  TP53 MUTATED TP53 WILD-TYPE 
          9.04           7.76 
[1] "0.4 - 40.9 (9.0)" "0.1 - 58.8 (7.8)"
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
[1] "hr=" "1.5"
D5V2, continuous
D5V3, binary
                cls
clus               0   1
  TP53 MUTATED    30  47
  TP53 WILD-TYPE  70 128
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     30   47
  TP53 WILD-TYPE   70  128
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           30             70
  MALE             47            128
D5V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  TP53 MUTATED                               0                   0
  TP53 WILD-TYPE                             6                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TP53 MUTATED                                77
  TP53 WILD-TYPE                             188
D5V5, multiclass
                                 clus
vv                                TP53 MUTATED TP53 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0              6
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           77            188
D5V6, binary
                cls
clus               0   1
  TP53 MUTATED    56  21
  TP53 WILD-TYPE 128  70
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     56   21
  TP53 WILD-TYPE  128   70
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO            56            128
  YES           21             70

Clustering(6) Variable = PTEN MUTATION ANALYSIS
D6V1, survival
                sevent
clus2              0   1
  PTEN MUTATED    35  50
  PTEN WILD-TYPE  65 125
  PTEN MUTATED PTEN WILD-TYPE 
            85            190 
  PTEN MUTATED PTEN WILD-TYPE 
            50            125 
$`PTEN MUTATED`
TCGA-02-0055 TCGA-02-2470 TCGA-06-0124 TCGA-06-0155 TCGA-06-0157 TCGA-06-0166 
        2.50        12.92         4.04         8.65         3.19         5.29 
TCGA-06-0168 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0213 
       19.04        40.37        28.47        18.28         7.04         0.20 
TCGA-06-0216 TCGA-06-0644 TCGA-06-0649 TCGA-06-0743 TCGA-06-0749 TCGA-06-0875 
       22.49        12.33         2.04        22.29         2.14         9.17 
TCGA-06-0876 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2558 
        8.91         5.85         5.42        20.94        13.58         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2565 TCGA-06-5411 TCGA-06-5412 TCGA-06-5418 
        4.90         9.27         6.81         8.35         4.54         2.73 
TCGA-06-5858 TCGA-12-0618 TCGA-12-1597 TCGA-12-3649 TCGA-14-0781 TCGA-14-0813 
        6.12         1.61        14.04        11.54         0.95         1.35 
TCGA-14-1395 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-2625 TCGA-19-5952 
        1.38         3.91         4.27        29.00         4.08        18.64 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5959 TCGA-26-5132 TCGA-26-6174 TCGA-27-1834 
        4.73         1.78         5.29         9.40         2.30        33.14 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-28-1753 
       14.04        11.51        10.39         7.59         2.86         1.18 
TCGA-28-2502 TCGA-28-2513 TCGA-28-5209 TCGA-28-5216 TCGA-32-1977 TCGA-32-1982 
        0.66         7.30         2.53        13.64         0.10         4.67 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2634 TCGA-32-4210 TCGA-32-4213 TCGA-32-5222 
       16.93        14.99         8.88         3.68        11.70         5.42 
TCGA-41-2571 TCGA-41-2573 TCGA-41-3915 TCGA-41-4097 TCGA-74-6577 TCGA-76-4925 
        0.85         8.94         6.02         0.20         4.31         4.77 
TCGA-76-4927 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
       17.59         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6664 TCGA-81-5910 
       20.94         5.03         0.23         9.24         7.76         1.61 
TCGA-81-5911 
       17.69 

$`PTEN WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        4.73         2.83        14.70        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        2.70         0.26         0.10        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.05        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0158 TCGA-06-0165 
        2.33        46.59        11.80        12.79         5.46        10.65 
TCGA-06-0167 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 
       11.41         3.12         0.23         2.20        53.98        37.02 
TCGA-06-0189 TCGA-06-0209 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
       14.93         3.88        12.43         0.33        10.32        11.80 
TCGA-06-0241 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
       14.96         3.22         4.47         9.63        23.57         9.37 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0877 TCGA-06-0878 
       19.53         5.36         2.70         0.92         6.71         7.17 
TCGA-06-0879 TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 
       22.98         1.08         2.83         8.52         5.95         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5413 TCGA-06-5414 
        0.43         9.37        11.21         3.52         8.81         8.98 
TCGA-06-5415 TCGA-06-5417 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        8.55         5.10         3.75         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        15.72        14.01 
TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-3650 
       14.40        10.39        24.13         2.63        10.62        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.52        11.74        13.08         3.22         2.01        11.97 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 TCGA-14-0862 
       23.05         2.24        11.24        13.74         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
       28.90         0.79        58.78        40.93        17.82         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-19-1390 
        7.13        17.49         0.39         3.39         9.86        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 
        5.03         9.67         4.87         7.53         0.16        16.47 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 
        7.00         4.47         6.64        11.28         8.02         7.96 
TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        5.39         5.42        13.87        31.33        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 
        8.84         1.22         1.58         7.92         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-2518 TCGA-27-2521 
        9.86        18.25        21.30        30.05        24.72        10.39 
TCGA-27-2523 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-2499 TCGA-28-2509 
       16.08        14.40        15.75         2.53         3.09         4.77 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 
        5.26         3.91         9.04        15.55        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
       15.35        19.50         1.18        12.69        12.23        20.78 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4211 
       15.95         8.84         7.36        13.15        11.11        12.59 
TCGA-32-4719 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 
       10.85        13.35         9.53         0.99         4.44        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 
        7.73         3.45        17.52        14.33         7.46         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4932 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
        3.09         3.65        47.93         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6656 TCGA-76-6663 TCGA-87-5896 
        8.32         4.83         7.69         0.07 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.07 
  PTEN MUTATED PTEN WILD-TYPE 
         40.37          58.78 
  PTEN MUTATED PTEN WILD-TYPE 
         6.120          8.825 
[1] "0.1 - 40.4 (6.1)" "0.1 - 58.8 (8.8)"
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
                cls
clus               0   1
  PTEN MUTATED    33  52
  PTEN WILD-TYPE  67 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     33   52
  PTEN WILD-TYPE   67  123
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE           33             67
  MALE             52            123
D6V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PTEN MUTATED                               0                   2
  PTEN WILD-TYPE                             6                   2
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PTEN MUTATED                                83
  PTEN WILD-TYPE                             182
D6V5, multiclass
                                 clus
vv                                PTEN MUTATED PTEN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0              6
  TREATED PRIMARY GBM                        2              2
  UNTREATED PRIMARY (DE NOVO) GBM           83            182
D6V6, binary
                cls
clus               0   1
  PTEN MUTATED    54  31
  PTEN WILD-TYPE 130  60
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     54   31
  PTEN WILD-TYPE  130   60
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO            54            130
  YES           31             60

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2                0   1
  PIK3CA MUTATED     9  20
  PIK3CA WILD-TYPE  91 155
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              29              246 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              20              155 
$`PIK3CA MUTATED`
TCGA-02-0033 TCGA-02-0047 TCGA-02-2485 TCGA-06-0119 TCGA-06-0166 TCGA-06-0879 
        2.83        14.70        15.42         2.70         5.29        22.98 
TCGA-06-2570 TCGA-06-5413 TCGA-06-5417 TCGA-06-6391 TCGA-12-0821 TCGA-12-5301 
        9.37         8.81         5.10         1.45        10.62         2.01 
TCGA-15-0742 TCGA-19-1790 TCGA-19-5947 TCGA-19-5954 TCGA-26-5136 TCGA-27-1838 
        9.86         5.03         6.64         7.96         1.22        11.51 
TCGA-27-2527 TCGA-28-6450 TCGA-32-1979 TCGA-32-2491 TCGA-32-2495 TCGA-41-2572 
       14.40         5.42        19.50        12.23        14.99        13.35 
TCGA-41-5651 TCGA-74-6578 TCGA-76-4928 TCGA-76-6193 TCGA-76-6286 
       11.54        14.33         3.09         2.70        20.94 

$`PIK3CA WILD-TYPE`
TCGA-02-0003 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0122 
        4.73         2.50        12.92        15.29        16.18         0.26 
TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        4.04         0.10        22.72        32.48        10.52        18.74 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 
       23.05        10.75         0.20         9.21         2.20         2.33 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0165 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 
       10.65        11.41        19.04         3.12         0.23         2.20 
TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 
       53.98        40.37        37.02        28.47        14.93        18.28 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.04         3.88         0.20        12.43        22.49         0.33 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       10.32        11.80        14.96        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        6.71         7.17         5.85         5.42        20.94        13.58 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 
        5.95         6.81         4.37         0.43        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        8.35         4.54         8.98         8.55         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 
        6.12         4.54         3.91         7.76         5.36         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        15.72        14.01        14.40         1.61        10.39 
TCGA-12-0688 TCGA-12-0692 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       24.13         2.63        14.04        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
       11.74        13.08         3.22        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.74         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.90         0.79         1.38        58.78        40.93        17.82 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-16-0846 
        7.63         7.13        17.49         0.39         3.39         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
        4.27        29.00        25.38         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 
        0.16         4.08        16.47         7.00         4.47        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
        8.02        18.64         4.73         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
        5.42        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.75         2.53         1.18         3.09         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 TCGA-32-1977 TCGA-32-1980 TCGA-32-1982 
        8.52        10.49        15.35         0.10         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.69        16.93        20.78        15.95         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        7.36        13.15        11.11         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85         5.42         0.85         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44         6.02         0.20         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 
        4.31         7.46         4.77         4.54        17.59         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.14        47.93         2.53        10.78        16.67         3.29 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06         8.32         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            1.22             0.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           22.98            58.78 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
            9.37             7.97 
[1] "1.2 - 23.0 (9.4)" "0.1 - 58.8 (8.0)"
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0650 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0875 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0876       TCGA-06-0877       TCGA-06-0878       TCGA-06-0879 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-06-0881       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2557       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0615       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0688       TCGA-12-0692       TCGA-12-0821       TCGA-12-1597 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-2554       TCGA-14-3476       TCGA-14-4157       TCGA-15-0742 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-16-0846       TCGA-16-0861       TCGA-16-1045       TCGA-19-1390 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-2631 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1439 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-26-6173 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1970       TCGA-32-1977 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-1979       TCGA-32-1980       TCGA-32-1982       TCGA-32-1986 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-32-2615       TCGA-32-2632       TCGA-32-2634       TCGA-32-2638 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4208       TCGA-32-4209       TCGA-32-4210       TCGA-32-4211 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4213       TCGA-32-4719       TCGA-32-5222       TCGA-41-2571 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-2572       TCGA-41-2573       TCGA-41-2575       TCGA-41-3392 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-3393       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-41-6646       TCGA-74-6573       TCGA-74-6575       TCGA-74-6577 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-74-6578       TCGA-74-6584       TCGA-76-4925       TCGA-76-4926 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4932       TCGA-76-4934       TCGA-76-4935       TCGA-76-6191 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6192       TCGA-76-6193       TCGA-76-6280       TCGA-76-6282 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0650 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0875 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0876       TCGA-06-0877       TCGA-06-0878       TCGA-06-0879 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-06-0881       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2557       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0615       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0688       TCGA-12-0692       TCGA-12-0821       TCGA-12-1597 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-2554       TCGA-14-3476       TCGA-14-4157       TCGA-15-0742 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-16-0846       TCGA-16-0861       TCGA-16-1045       TCGA-19-1390 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-2631 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1439 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-26-6173 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1970       TCGA-32-1977 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-1979       TCGA-32-1980       TCGA-32-1982       TCGA-32-1986 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-32-2615       TCGA-32-2632       TCGA-32-2634       TCGA-32-2638 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4208       TCGA-32-4209       TCGA-32-4210       TCGA-32-4211 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4213       TCGA-32-4719       TCGA-32-5222       TCGA-41-2571 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-2572       TCGA-41-2573       TCGA-41-2575       TCGA-41-3392 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-3393       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-41-6646       TCGA-74-6573       TCGA-74-6575       TCGA-74-6577 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-74-6578       TCGA-74-6584       TCGA-76-4925       TCGA-76-4926 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4932       TCGA-76-4934       TCGA-76-4935       TCGA-76-6191 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6192       TCGA-76-6193       TCGA-76-6280       TCGA-76-6282 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0241       TCGA-06-0644       TCGA-06-0645 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0646       TCGA-06-0648       TCGA-06-0649       TCGA-06-0650 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0686       TCGA-06-0743       TCGA-06-0744       TCGA-06-0745 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0747       TCGA-06-0749       TCGA-06-0750       TCGA-06-0875 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0876       TCGA-06-0877       TCGA-06-0878       TCGA-06-0879 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-06-0881       TCGA-06-0882       TCGA-06-0939       TCGA-06-1804 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2557       TCGA-06-2558       TCGA-06-2559       TCGA-06-2561 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2562       TCGA-06-2563       TCGA-06-2564       TCGA-06-2565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2567       TCGA-06-2569       TCGA-06-2570       TCGA-06-5408 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-5410       TCGA-06-5411       TCGA-06-5412       TCGA-06-5413 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-06-5414       TCGA-06-5415       TCGA-06-5417       TCGA-06-5418 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-5856       TCGA-06-5858       TCGA-06-5859       TCGA-06-6388 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6389       TCGA-06-6390       TCGA-06-6391       TCGA-06-6693 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-6694       TCGA-06-6695       TCGA-06-6697       TCGA-06-6698 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6699       TCGA-06-6700       TCGA-06-6701       TCGA-08-0386 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0615       TCGA-12-0616       TCGA-12-0618       TCGA-12-0619 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0688       TCGA-12-0692       TCGA-12-0821       TCGA-12-1597 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-12-3649       TCGA-12-3650       TCGA-12-3652       TCGA-12-3653 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-5295       TCGA-12-5299       TCGA-12-5301       TCGA-14-0740 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-14-0781       TCGA-14-0786       TCGA-14-0787       TCGA-14-0789 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0790       TCGA-14-0813       TCGA-14-0817       TCGA-14-0862 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0871       TCGA-14-1043       TCGA-14-1395       TCGA-14-1450 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1456       TCGA-14-1823       TCGA-14-1825       TCGA-14-1829 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-2554       TCGA-14-3476       TCGA-14-4157       TCGA-15-0742 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-16-0846       TCGA-16-0861       TCGA-16-1045       TCGA-19-1390 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-1790       TCGA-19-2619       TCGA-19-2620       TCGA-19-2623 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-2624       TCGA-19-2625       TCGA-19-2629       TCGA-19-2631 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-4068       TCGA-19-5947       TCGA-19-5950       TCGA-19-5951 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5952       TCGA-19-5953       TCGA-19-5954       TCGA-19-5955 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-19-5958       TCGA-19-5959       TCGA-19-5960       TCGA-26-1439 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-1442       TCGA-26-5132       TCGA-26-5133       TCGA-26-5134 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5135       TCGA-26-5136       TCGA-26-5139       TCGA-26-6173 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-6174       TCGA-27-1830       TCGA-27-1831       TCGA-27-1832 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1833       TCGA-27-1834       TCGA-27-1835       TCGA-27-1836 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1837       TCGA-27-1838       TCGA-27-2518       TCGA-27-2519 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2521       TCGA-27-2523       TCGA-27-2524       TCGA-27-2526 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2527       TCGA-27-2528       TCGA-28-1747       TCGA-28-1753 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2499       TCGA-28-2502       TCGA-28-2509       TCGA-28-2513 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2514       TCGA-28-5204       TCGA-28-5207       TCGA-28-5208 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5209       TCGA-28-5211       TCGA-28-5213       TCGA-28-5214 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5215       TCGA-28-5216       TCGA-28-5218       TCGA-28-5219 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5220       TCGA-28-6450       TCGA-32-1970       TCGA-32-1977 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-1979       TCGA-32-1980       TCGA-32-1982       TCGA-32-1986 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-1991       TCGA-32-2491       TCGA-32-2494       TCGA-32-2495 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-32-2615       TCGA-32-2632       TCGA-32-2634       TCGA-32-2638 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4208       TCGA-32-4209       TCGA-32-4210       TCGA-32-4211 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4213       TCGA-32-4719       TCGA-32-5222       TCGA-41-2571 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-2572       TCGA-41-2573       TCGA-41-2575       TCGA-41-3392 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-3393       TCGA-41-3915       TCGA-41-4097       TCGA-41-5651 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-41-6646       TCGA-74-6573       TCGA-74-6575       TCGA-74-6577 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-74-6578       TCGA-74-6584       TCGA-76-4925       TCGA-76-4926 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4927       TCGA-76-4928       TCGA-76-4929       TCGA-76-4931 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4932       TCGA-76-4934       TCGA-76-4935       TCGA-76-6191 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6192       TCGA-76-6193       TCGA-76-6280       TCGA-76-6282 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6285       TCGA-76-6286       TCGA-76-6656       TCGA-76-6657 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6661       TCGA-76-6662       TCGA-76-6663       TCGA-76-6664 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-81-5910       TCGA-81-5911       TCGA-87-5896 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    12  17
  PIK3CA WILD-TYPE  88 158
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   17
  PIK3CA WILD-TYPE   88  158
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               88
  MALE               17              158
D7V4, continuous
                  vv
clus               GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PIK3CA MUTATED                               1                   1
  PIK3CA WILD-TYPE                             5                   3
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PIK3CA MUTATED                                27
  PIK3CA WILD-TYPE                             238
D7V5, multiclass
                                 clus
vv                                PIK3CA MUTATED PIK3CA WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                1                5
  TREATED PRIMARY GBM                          1                3
  UNTREATED PRIMARY (DE NOVO) GBM             27              238
D7V6, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    19  10
  PIK3CA WILD-TYPE 165  81
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     19   10
  PIK3CA WILD-TYPE  165   81
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO              19              165
  YES             10               81

Clustering(8) Variable = RB1 MUTATION ANALYSIS
D8V1, survival
               sevent
clus2             0   1
  RB1 MUTATED    12  11
  RB1 WILD-TYPE  88 164
  RB1 MUTATED RB1 WILD-TYPE 
           23           252 
  RB1 MUTATED RB1 WILD-TYPE 
           11           164 
$`RB1 MUTATED`
TCGA-02-0033 TCGA-06-0130 TCGA-06-0140 TCGA-06-0184 TCGA-06-0188 TCGA-06-0195 
        2.83        10.52         0.20        40.37        28.47         7.04 
TCGA-06-0213 TCGA-06-0939 TCGA-06-5858 TCGA-06-6698 TCGA-19-2623 TCGA-19-2625 
        0.20        20.94         6.12         4.77         7.53         4.08 
TCGA-26-5132 TCGA-27-2524 TCGA-32-1970 TCGA-32-2491 TCGA-32-2632 TCGA-32-2634 
        9.40         7.59        15.35        12.23         8.84         8.88 
TCGA-32-4213 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-81-5911 
       11.70        20.94         9.24         7.69        17.69 

$`RB1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.70         2.50        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       16.18         2.70         0.26         4.04         0.10        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 
       32.48        18.74        23.05        10.75         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 
        0.23         2.20        53.98        37.02        14.93        18.28 
TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        3.88        12.43        22.49         0.33        10.32        11.80 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       14.96        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 
       22.98         5.85         5.42        13.58         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        4.54         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 
        0.49         7.36         8.28        12.85         1.55         4.77 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
        4.96        15.72        14.01        14.40         1.61        10.39 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
       24.13         2.63        10.62        14.04        11.54        10.95 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       34.52        11.74        13.08         3.22         2.01        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.74         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.90         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.93        17.82         7.63         7.13        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.39         9.86         3.91         4.27        29.00        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 
        5.03         9.67         4.87         0.16        16.47         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        4.47         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 
        7.96         1.78         5.39         5.29         5.42        13.87 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
       31.33        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        10.39        16.08         2.86        14.40        15.75 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.18         3.09         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       10.49         5.42         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2638 
       12.69        16.93        20.78        14.99        15.95         7.36 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 
       13.15        11.11         3.68        12.59        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.31        14.33         7.46         4.77         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        3.09         3.65         9.14        47.93         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        4.83         5.03         0.23         7.76         1.61         0.07 

  RB1 MUTATED RB1 WILD-TYPE 
         0.20          0.07 
  RB1 MUTATED RB1 WILD-TYPE 
        40.37         58.78 
  RB1 MUTATED RB1 WILD-TYPE 
         8.88          7.99 
[1] "0.2 - 40.4 (8.9)" "0.1 - 58.8 (8.0)"
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0241 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0939    TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740    TCGA-14-0781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0817    TCGA-14-0862    TCGA-14-0871    TCGA-14-1043    TCGA-14-1395 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1450    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1439    TCGA-26-1442    TCGA-26-5132 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2502    TCGA-28-2509    TCGA-28-2513 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1970 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-32-1977    TCGA-32-1979    TCGA-32-1980    TCGA-32-1982    TCGA-32-1986 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-1991    TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2615 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
  "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6285 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661    TCGA-76-6662 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0241 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0939    TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740    TCGA-14-0781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0817    TCGA-14-0862    TCGA-14-0871    TCGA-14-1043    TCGA-14-1395 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1450    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1439    TCGA-26-1442    TCGA-26-5132 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2502    TCGA-28-2509    TCGA-28-2513 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1970 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-32-1977    TCGA-32-1979    TCGA-32-1980    TCGA-32-1982    TCGA-32-1986 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-1991    TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2615 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
  "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6285 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661    TCGA-76-6662 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0241 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0939    TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740    TCGA-14-0781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0817    TCGA-14-0862    TCGA-14-0871    TCGA-14-1043    TCGA-14-1395 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1450    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1439    TCGA-26-1442    TCGA-26-5132 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2502    TCGA-28-2509    TCGA-28-2513 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1970 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-32-1977    TCGA-32-1979    TCGA-32-1980    TCGA-32-1982    TCGA-32-1986 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-1991    TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2615 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
  "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6285 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661    TCGA-76-6662 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "1.5"
D8V2, continuous
D8V3, binary
               cls
clus              0   1
  RB1 MUTATED     7  16
  RB1 WILD-TYPE  93 159
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      7   16
  RB1 WILD-TYPE   93  159
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           7            93
  MALE            16           159
D8V4, continuous
               vv
clus            GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  RB1 MUTATED                               1                   0
  RB1 WILD-TYPE                             5                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  RB1 MUTATED                                22
  RB1 WILD-TYPE                             243
D8V5, multiclass
                                 clus
vv                                RB1 MUTATED RB1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1             5
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          22           243
D8V6, binary
               cls
clus              0   1
  RB1 MUTATED    16   7
  RB1 WILD-TYPE 168  84
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED     16    7
  RB1 WILD-TYPE  168   84
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO           16           168
  YES           7            84

Clustering(9) Variable = PRB2 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2              0   1
  PRB2 MUTATED     0   5
  PRB2 WILD-TYPE 100 170
  PRB2 MUTATED PRB2 WILD-TYPE 
             5            270 
  PRB2 MUTATED PRB2 WILD-TYPE 
             5            170 
$`PRB2 MUTATED`
TCGA-06-0124 TCGA-14-1823 TCGA-27-1836 TCGA-27-1837 TCGA-76-6280 
        4.04        17.82        30.05        14.04        11.38 

$`PRB2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.70         2.50        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 
       15.42        16.18         2.70         0.26         0.10        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       32.48        10.52        18.74        23.05        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.21         2.20         2.33        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
        8.65         3.19         5.46        10.65         5.29        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 
       19.04         3.12         0.23         2.20        53.98        40.37 
TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 
       37.02        28.47        14.93        18.28         7.04         3.88 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.20        12.43        22.49         0.33        10.32        11.80 
TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       14.96        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 
       22.98         5.85         5.42        20.94        13.58         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        6.81         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 
        8.35         4.54         8.81         8.98         8.55         5.10 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        15.72        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.40         1.61        10.39        24.13         2.63        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       14.04        11.54        10.95        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.01        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.74         1.35         5.39         2.89        28.90 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1825 TCGA-14-1829 
        0.79         1.38        58.78        40.93         7.63         7.13 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 
       17.49         0.39         3.39         9.86         3.91         4.27 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.00        25.38         5.03         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        16.47         7.00         4.47         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
        5.39         5.29         5.42        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       21.30        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.75         2.53         1.18 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.09         0.66         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.35         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        14.99        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
        8.88         7.36        13.15        11.11         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        7.73         3.45        17.52         4.31        14.33         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.77         4.54        17.59         3.09         3.65         9.14 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  PRB2 MUTATED PRB2 WILD-TYPE 
          4.04           0.07 
  PRB2 MUTATED PRB2 WILD-TYPE 
         30.05          58.78 
  PRB2 MUTATED PRB2 WILD-TYPE 
         14.04           7.99 
[1] "4.0 - 30.1 (14.0)" "0.1 - 58.8 (8.0)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0241     TCGA-06-0644     TCGA-06-0645 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0646     TCGA-06-0648     TCGA-06-0649     TCGA-06-0650 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0686     TCGA-06-0743     TCGA-06-0744     TCGA-06-0745 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0747     TCGA-06-0749     TCGA-06-0750     TCGA-06-0875 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0876     TCGA-06-0877     TCGA-06-0878     TCGA-06-0879 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-0881     TCGA-06-0882     TCGA-06-0939     TCGA-06-1804 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2557     TCGA-06-2558     TCGA-06-2559     TCGA-06-2561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2562     TCGA-06-2563     TCGA-06-2564     TCGA-06-2565 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-2567     TCGA-06-2569     TCGA-06-2570     TCGA-06-5408 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5410     TCGA-06-5411     TCGA-06-5412     TCGA-06-5413 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5414     TCGA-06-5415     TCGA-06-5417     TCGA-06-5418 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-5856     TCGA-06-5858     TCGA-06-5859     TCGA-06-6388 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6389     TCGA-06-6390     TCGA-06-6391     TCGA-06-6693 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6694     TCGA-06-6695     TCGA-06-6697     TCGA-06-6698 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-06-6699     TCGA-06-6700     TCGA-06-6701     TCGA-08-0386 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0615     TCGA-12-0616     TCGA-12-0618     TCGA-12-0619 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-0688     TCGA-12-0692     TCGA-12-0821     TCGA-12-1597 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-3649     TCGA-12-3650     TCGA-12-3652     TCGA-12-3653 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-12-5295     TCGA-12-5299     TCGA-12-5301     TCGA-14-0740 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0781     TCGA-14-0786     TCGA-14-0787     TCGA-14-0789 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0790     TCGA-14-0813     TCGA-14-0817     TCGA-14-0862 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-0871     TCGA-14-1043     TCGA-14-1395     TCGA-14-1450 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-1456     TCGA-14-1823     TCGA-14-1825     TCGA-14-1829 
"PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-14-2554     TCGA-14-3476     TCGA-14-4157     TCGA-15-0742 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-16-0846     TCGA-16-0861     TCGA-16-1045     TCGA-19-1390 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-1790     TCGA-19-2619     TCGA-19-2620     TCGA-19-2623 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-2624     TCGA-19-2625     TCGA-19-2629     TCGA-19-2631 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-4068     TCGA-19-5947     TCGA-19-5950     TCGA-19-5951 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5952     TCGA-19-5953     TCGA-19-5954     TCGA-19-5955 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-19-5958     TCGA-19-5959     TCGA-19-5960     TCGA-26-1439 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-1442     TCGA-26-5132     TCGA-26-5133     TCGA-26-5134 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-5135     TCGA-26-5136     TCGA-26-5139     TCGA-26-6173 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-26-6174     TCGA-27-1830     TCGA-27-1831     TCGA-27-1832 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-1833     TCGA-27-1834     TCGA-27-1835     TCGA-27-1836 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-27-1837     TCGA-27-1838     TCGA-27-2518     TCGA-27-2519 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2521     TCGA-27-2523     TCGA-27-2524     TCGA-27-2526 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-27-2527     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2502     TCGA-28-2509     TCGA-28-2513 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1970     TCGA-32-1977 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1979     TCGA-32-1980     TCGA-32-1982     TCGA-32-1986 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-1991     TCGA-32-2491     TCGA-32-2494     TCGA-32-2495 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-2615     TCGA-32-2632     TCGA-32-2634     TCGA-32-2638 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4208     TCGA-32-4209     TCGA-32-4210     TCGA-32-4211 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-32-4213     TCGA-32-4719     TCGA-32-5222     TCGA-41-2571 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-2573     TCGA-41-2575     TCGA-41-3392 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-3393     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-41-6646     TCGA-74-6573     TCGA-74-6575     TCGA-74-6577 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-74-6578     TCGA-74-6584     TCGA-76-4925     TCGA-76-4926 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4927     TCGA-76-4928     TCGA-76-4929     TCGA-76-4931 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-4932     TCGA-76-4934     TCGA-76-4935     TCGA-76-6191 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6192     TCGA-76-6193     TCGA-76-6280     TCGA-76-6282 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-76-6285     TCGA-76-6286     TCGA-76-6656     TCGA-76-6657 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-76-6661     TCGA-76-6662     TCGA-76-6663     TCGA-76-6664 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-81-5910     TCGA-81-5911     TCGA-87-5896 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
D9V3, binary
                cls
clus               0   1
  PRB2 MUTATED     2   3
  PRB2 WILD-TYPE  98 172
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      2    3
  PRB2 WILD-TYPE   98  172
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            2             98
  MALE              3            172
D9V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PRB2 MUTATED                               0                   0
  PRB2 WILD-TYPE                             6                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PRB2 MUTATED                                 5
  PRB2 WILD-TYPE                             260
D9V5, multiclass
                                 clus
vv                                PRB2 MUTATED PRB2 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0              6
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            5            260
D9V6, binary
                cls
clus               0   1
  PRB2 MUTATED     4   1
  PRB2 WILD-TYPE 180  90
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      4    1
  PRB2 WILD-TYPE  180   90
     clus
vv    PRB2 MUTATED PRB2 WILD-TYPE
  NO             4            180
  YES            1             90

Clustering(10) Variable = NF1 MUTATION ANALYSIS
D10V1, survival
               sevent
clus2             0   1
  NF1 MUTATED    11  18
  NF1 WILD-TYPE  89 157
  NF1 MUTATED NF1 WILD-TYPE 
           29           246 
  NF1 MUTATED NF1 WILD-TYPE 
           18           157 
$`NF1 MUTATED`
TCGA-02-0033 TCGA-06-0119 TCGA-06-0124 TCGA-06-0184 TCGA-06-0192 TCGA-06-0214 
        2.83         2.70         4.04        40.37        18.28        12.43 
TCGA-06-2562 TCGA-06-2569 TCGA-06-5410 TCGA-06-5412 TCGA-06-6698 TCGA-14-0789 
        2.83         0.43         3.52         4.54         4.77        11.24 
TCGA-14-0871 TCGA-14-1043 TCGA-19-2620 TCGA-19-5953 TCGA-26-5133 TCGA-28-2502 
       28.90         0.79         4.87         4.73        14.86         0.66 
TCGA-28-5208 TCGA-28-6450 TCGA-32-1980 TCGA-32-1986 TCGA-32-2494 TCGA-41-3392 
       15.55         5.42         1.18        12.69        20.78         0.99 
TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 TCGA-76-6657 TCGA-76-6663 
        0.20         7.73        17.52         5.03         7.69 

$`NF1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.70         2.50        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       16.18         0.26         0.10        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.05        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 
        0.23         2.20        53.98        37.02        28.47        14.93 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.04         3.88         0.20        22.49         0.33        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       11.80        14.96        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        22.98         5.85         5.42        20.94        13.58 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 
        1.08         0.76         4.90         9.27         8.52         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 
        6.81         4.37         9.37        11.21         8.35         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28        12.85         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       15.72        14.01        14.40         1.61        10.39        24.13 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        2.63        10.62        14.04        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       11.74        13.08         3.22         2.01        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       23.05         2.24        13.74         1.35         5.39         2.89 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.93        17.82         7.63         7.13 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 
       17.49         0.39         3.39         9.86         3.91         4.27 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 
       29.00        25.38         5.03         9.67         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         4.47         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
        8.02        18.64         7.96         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
        5.42        13.87        31.33         9.40         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.75         2.53         1.18         3.09 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 
        4.77         7.30         5.26         3.91         9.04         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 
        8.52        10.49        15.35         0.10        19.50         4.67 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       16.93        12.23        14.99        15.95         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        7.36        13.15        11.11         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 
        4.44         6.02        11.54         3.45         4.31        14.33 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
        7.46         4.77         4.54        17.59         3.09         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.14        47.93         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        0.23         9.24         7.76         1.61        17.69         0.07 

  NF1 MUTATED NF1 WILD-TYPE 
         0.20          0.07 
  NF1 MUTATED NF1 WILD-TYPE 
        40.37         58.78 
  NF1 MUTATED NF1 WILD-TYPE 
        4.870         8.535 
[1] "0.2 - 40.4 (4.9)" "0.1 - 58.8 (8.5)"
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0241 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0939    TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740    TCGA-14-0781 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0817    TCGA-14-0862    TCGA-14-0871    TCGA-14-1043    TCGA-14-1395 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-14-1450    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1439    TCGA-26-1442    TCGA-26-5132 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2502    TCGA-28-2509    TCGA-28-2513 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1970 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1979    TCGA-32-1980    TCGA-32-1982    TCGA-32-1986 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-32-1991    TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2615 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6285 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661    TCGA-76-6662 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0241 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0939    TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740    TCGA-14-0781 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0817    TCGA-14-0862    TCGA-14-0871    TCGA-14-1043    TCGA-14-1395 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-14-1450    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1439    TCGA-26-1442    TCGA-26-5132 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2502    TCGA-28-2509    TCGA-28-2513 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1970 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1979    TCGA-32-1980    TCGA-32-1982    TCGA-32-1986 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-32-1991    TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2615 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6285 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661    TCGA-76-6662 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0241 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648    TCGA-06-0649 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744    TCGA-06-0745 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875    TCGA-06-0876 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881    TCGA-06-0882 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0939    TCGA-06-1804    TCGA-06-2557    TCGA-06-2558    TCGA-06-2559 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2561    TCGA-06-2562    TCGA-06-2563    TCGA-06-2564    TCGA-06-2565 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2567    TCGA-06-2569    TCGA-06-2570    TCGA-06-5408    TCGA-06-5410 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-5411    TCGA-06-5412    TCGA-06-5413    TCGA-06-5414    TCGA-06-5415 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-5417    TCGA-06-5418    TCGA-06-5856    TCGA-06-5858    TCGA-06-5859 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6388    TCGA-06-6389    TCGA-06-6390    TCGA-06-6391    TCGA-06-6693 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6694    TCGA-06-6695    TCGA-06-6697    TCGA-06-6698    TCGA-06-6699 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-6700    TCGA-06-6701    TCGA-08-0386    TCGA-12-0615    TCGA-12-0616 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0618    TCGA-12-0619    TCGA-12-0688    TCGA-12-0692    TCGA-12-0821 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-1597    TCGA-12-3649    TCGA-12-3650    TCGA-12-3652    TCGA-12-3653 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-5295    TCGA-12-5299    TCGA-12-5301    TCGA-14-0740    TCGA-14-0781 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0786    TCGA-14-0787    TCGA-14-0789    TCGA-14-0790    TCGA-14-0813 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0817    TCGA-14-0862    TCGA-14-0871    TCGA-14-1043    TCGA-14-1395 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-14-1450    TCGA-14-1456    TCGA-14-1823    TCGA-14-1825    TCGA-14-1829 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-2554    TCGA-14-3476    TCGA-14-4157    TCGA-15-0742    TCGA-16-0846 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-16-0861    TCGA-16-1045    TCGA-19-1390    TCGA-19-1790    TCGA-19-2619 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-2620    TCGA-19-2623    TCGA-19-2624    TCGA-19-2625    TCGA-19-2629 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-2631    TCGA-19-4068    TCGA-19-5947    TCGA-19-5950    TCGA-19-5951 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5952    TCGA-19-5953    TCGA-19-5954    TCGA-19-5955    TCGA-19-5958 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5959    TCGA-19-5960    TCGA-26-1439    TCGA-26-1442    TCGA-26-5132 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-5133    TCGA-26-5134    TCGA-26-5135    TCGA-26-5136    TCGA-26-5139 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-6173    TCGA-26-6174    TCGA-27-1830    TCGA-27-1831    TCGA-27-1832 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1833    TCGA-27-1834    TCGA-27-1835    TCGA-27-1836    TCGA-27-1837 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1838    TCGA-27-2518    TCGA-27-2519    TCGA-27-2521    TCGA-27-2523 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2524    TCGA-27-2526    TCGA-27-2527    TCGA-27-2528    TCGA-28-1747 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-1753    TCGA-28-2499    TCGA-28-2502    TCGA-28-2509    TCGA-28-2513 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-2514    TCGA-28-5204    TCGA-28-5207    TCGA-28-5208    TCGA-28-5209 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-28-5211    TCGA-28-5213    TCGA-28-5214    TCGA-28-5215    TCGA-28-5216 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5218    TCGA-28-5219    TCGA-28-5220    TCGA-28-6450    TCGA-32-1970 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-32-1977    TCGA-32-1979    TCGA-32-1980    TCGA-32-1982    TCGA-32-1986 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-32-1991    TCGA-32-2491    TCGA-32-2494    TCGA-32-2495    TCGA-32-2615 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2632    TCGA-32-2634    TCGA-32-2638    TCGA-32-4208    TCGA-32-4209 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-4210    TCGA-32-4211    TCGA-32-4213    TCGA-32-4719    TCGA-32-5222 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-2571    TCGA-41-2572    TCGA-41-2573    TCGA-41-2575    TCGA-41-3392 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-41-3393    TCGA-41-3915    TCGA-41-4097    TCGA-41-5651    TCGA-41-6646 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-74-6573    TCGA-74-6575    TCGA-74-6577    TCGA-74-6578    TCGA-74-6584 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4925    TCGA-76-4926    TCGA-76-4927    TCGA-76-4928    TCGA-76-4929 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4931    TCGA-76-4932    TCGA-76-4934    TCGA-76-4935    TCGA-76-6191 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6192    TCGA-76-6193    TCGA-76-6280    TCGA-76-6282    TCGA-76-6285 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6286    TCGA-76-6656    TCGA-76-6657    TCGA-76-6661    TCGA-76-6662 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6663    TCGA-76-6664    TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
               cls
clus              0   1
  NF1 MUTATED    11  18
  NF1 WILD-TYPE  89 157
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     11   18
  NF1 WILD-TYPE   89  157
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  FEMALE          11            89
  MALE            18           157
D10V4, continuous
               vv
clus            GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  NF1 MUTATED                               1                   0
  NF1 WILD-TYPE                             5                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  NF1 MUTATED                                28
  NF1 WILD-TYPE                             237
D10V5, multiclass
                                 clus
vv                                NF1 MUTATED NF1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1             5
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          28           237
D10V6, binary
               cls
clus              0   1
  NF1 MUTATED    18  11
  NF1 WILD-TYPE 166  80
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     18   11
  NF1 WILD-TYPE  166   80
     clus
vv    NF1 MUTATED NF1 WILD-TYPE
  NO           18           166
  YES          11            80

Clustering(11) Variable = CDC27 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2               0   1
  CDC27 MUTATED     1   4
  CDC27 WILD-TYPE  99 171
  CDC27 MUTATED CDC27 WILD-TYPE 
              5             270 
  CDC27 MUTATED CDC27 WILD-TYPE 
              4             171 
$`CDC27 MUTATED`
TCGA-06-6391 TCGA-12-0619 TCGA-32-4211 TCGA-41-3393 TCGA-76-4935 
        1.45        10.39        12.59         4.44        10.78 

$`CDC27 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.70         2.50        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.42        16.18         2.70         0.26         4.04         0.10 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        32.48        10.52        18.74        23.05        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20         9.21         2.20         2.33        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       12.79         8.65         3.19         5.46        10.65         5.29 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.04         3.12         0.23         2.20        53.98 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       40.37        37.02        28.47        14.93        18.28         7.04 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        3.88         0.20        12.43        22.49         0.33        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       11.80        14.96        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        22.98         5.85         5.42        20.94        13.58 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.76         5.36         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        15.72        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
       14.40         1.61        24.13         2.63        10.62        14.04 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.01        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.74         1.35         5.39         2.89        28.90         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.93        17.82         7.63         7.13 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 
       17.49         0.39         3.39         9.86         3.91         4.27 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.00        25.38         5.03         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        16.47         7.00         4.47         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
        5.39         5.29         5.42        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.18         3.09         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.35         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84         8.88         7.36        13.15        11.11 
TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
        3.68        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         0.99         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        7.73         3.45        17.52         4.31        14.33         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.77         4.54        17.59         3.09         3.65         9.14 
TCGA-76-4932 TCGA-76-4934 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
       47.93         2.53        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

  CDC27 MUTATED CDC27 WILD-TYPE 
           1.45            0.07 
  CDC27 MUTATED CDC27 WILD-TYPE 
          12.59           58.78 
  CDC27 MUTATED CDC27 WILD-TYPE 
          10.39            8.15 
[1] "1.4 - 12.6 (10.4)" "0.1 - 58.8 (8.1)" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
  "CDC27 MUTATED" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE"   "CDC27 MUTATED" "CDC27 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
[1] "hr=" "1.8"
D11V2, continuous
D11V3, binary
                 cls
clus                0   1
  CDC27 MUTATED     3   2
  CDC27 WILD-TYPE  97 173
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      3    2
  CDC27 WILD-TYPE   97  173
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  FEMALE             3              97
  MALE               2             173
D11V4, continuous
[1] "Remove cluster labels:" "CDC27 MUTATED"         
clus
  CDC27 MUTATED CDC27 WILD-TYPE 
              2             192 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0126      TCGA-06-0128      TCGA-06-0129      TCGA-06-0130 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0139      TCGA-06-0141      TCGA-06-0154      TCGA-06-0155 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0157      TCGA-06-0158      TCGA-06-0168      TCGA-06-0169 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0174      TCGA-06-0184      TCGA-06-0185      TCGA-06-0188 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0214      TCGA-06-0216 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0646 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0648      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0750      TCGA-06-0875      TCGA-06-0876 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0878      TCGA-06-0879      TCGA-06-0881      TCGA-06-0882 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-0939      TCGA-06-2557      TCGA-06-2558      TCGA-06-2559 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2561      TCGA-06-2562      TCGA-06-2563      TCGA-06-2564 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-2565      TCGA-06-2567      TCGA-06-2569      TCGA-06-2570 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5408      TCGA-06-5410      TCGA-06-5411      TCGA-06-5412 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5413      TCGA-06-5414      TCGA-06-5415      TCGA-06-5417 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-5418      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6695      TCGA-06-6697 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-06-6700      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0688      TCGA-12-0692      TCGA-12-0821 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-1597      TCGA-12-3649      TCGA-12-3650      TCGA-12-3652 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-12-3653      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0786      TCGA-14-0787      TCGA-14-0789      TCGA-14-0790 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-0813      TCGA-14-0817      TCGA-14-0862      TCGA-14-0871 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-1043      TCGA-14-1395      TCGA-14-1450      TCGA-14-1456 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-1823      TCGA-14-1825      TCGA-14-1829      TCGA-14-2554 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-19-1390      TCGA-19-1790 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2631 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5954      TCGA-19-5958      TCGA-19-5959 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-19-5960      TCGA-26-1442      TCGA-26-5132      TCGA-26-5133 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-26-5134      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5219      TCGA-28-5220      TCGA-32-1982 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-32-1986      TCGA-32-2615      TCGA-41-2571      TCGA-41-2573 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-41-2575      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-6191      TCGA-76-6192 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" "CDC27 WILD-TYPE" 
                 vv
clus              GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  CDC27 MUTATED                               0                   0
  CDC27 WILD-TYPE                             6                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  CDC27 MUTATED                                 5
  CDC27 WILD-TYPE                             260
D11V5, multiclass
                                 clus
vv                                CDC27 MUTATED CDC27 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)               0               6
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             5             260
D11V6, binary
                 cls
clus                0   1
  CDC27 MUTATED     3   2
  CDC27 WILD-TYPE 181  89
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      3    2
  CDC27 WILD-TYPE  181   89
     clus
vv    CDC27 MUTATED CDC27 WILD-TYPE
  NO              3             181
  YES             2              89

Clustering(12) Variable = STAG2 MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2               0   1
  STAG2 MUTATED     3   9
  STAG2 WILD-TYPE  97 166
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             263 
  STAG2 MUTATED STAG2 WILD-TYPE 
              9             166 
$`STAG2 MUTATED`
TCGA-06-0749 TCGA-06-2561 TCGA-06-6388 TCGA-12-0692 TCGA-12-0821 TCGA-14-0789 
        2.14         9.27         3.91         2.63        10.62        11.24 
TCGA-14-2554 TCGA-19-5955 TCGA-32-5222 TCGA-41-4097 TCGA-74-6577 TCGA-81-5910 
       17.49         1.78         5.42         0.20         4.31         1.61 

$`STAG2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.70         2.50        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.42        16.18         2.70         0.26         4.04         0.10 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        32.48        10.52        18.74        23.05        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20         9.21         2.20         2.33        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       12.79         8.65         3.19         5.46        10.65         5.29 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.04         3.12         0.23         2.20        53.98 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       40.37        37.02        28.47        14.93        18.28         7.04 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        3.88         0.20        12.43        22.49         0.33        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       11.80        14.96        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 
       22.98         5.85         5.42        20.94        13.58         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        0.76         4.90         2.83         8.52         5.95         6.81 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        4.54         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         4.54         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        15.72        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0688 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       10.39        24.13        14.04        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       11.74        13.08         3.22         2.01        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       23.05         2.24        13.74         1.35         5.39         2.89 
TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
       28.90         0.79         1.38        58.78        40.93        17.82 
TCGA-14-1825 TCGA-14-1829 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 
        7.63         7.13         0.39         3.39         9.86         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.27        29.00        25.38         5.03         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        16.47         7.00         4.47 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
        5.39         5.29         5.42        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.18         3.09         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.35         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84         8.88         7.36        13.15        11.11 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 
        3.68        12.59        11.70        10.85         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
        8.94         9.53         0.99         4.44         6.02        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        7.73         3.45        17.52        14.33         7.46         4.77 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.14        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76        17.69         0.07 

  STAG2 MUTATED STAG2 WILD-TYPE 
           0.20            0.07 
  STAG2 MUTATED STAG2 WILD-TYPE 
          17.49           58.78 
  STAG2 MUTATED STAG2 WILD-TYPE 
           4.11            8.35 
[1] "0.2 - 17.5 (4.1)" "0.1 - 58.8 (8.3)"
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"STAG2 WILD-TYPE"   "STAG2 MUTATED"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"STAG2 WILD-TYPE"   "STAG2 MUTATED"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"STAG2 WILD-TYPE"   "STAG2 MUTATED"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
[1] "hr=" "2.2"
D12V2, continuous
D12V3, binary
                 cls
clus                0   1
  STAG2 MUTATED     5   7
  STAG2 WILD-TYPE  95 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      5    7
  STAG2 WILD-TYPE   95  168
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  FEMALE             5              95
  MALE               7             168
D12V4, continuous
                 vv
clus              GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  STAG2 MUTATED                               0                   0
  STAG2 WILD-TYPE                             6                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  STAG2 MUTATED                                12
  STAG2 WILD-TYPE                             253
D12V5, multiclass
                                 clus
vv                                STAG2 MUTATED STAG2 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)               0               6
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM            12             253
D12V6, binary
                 cls
clus                0   1
  STAG2 MUTATED     6   6
  STAG2 WILD-TYPE 178  85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      6    6
  STAG2 WILD-TYPE  178   85
     clus
vv    STAG2 MUTATED STAG2 WILD-TYPE
  NO              6             178
  YES             6              85

Clustering(13) Variable = TPTE2 MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2               0   1
  TPTE2 MUTATED     4   4
  TPTE2 WILD-TYPE  96 171
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             267 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              4             171 
$`TPTE2 MUTATED`
TCGA-02-0047 TCGA-06-0184 TCGA-06-0238 TCGA-06-0743 TCGA-06-5417 TCGA-06-5858 
       14.70        40.37        11.80        22.29         5.10         6.12 
TCGA-06-6390 TCGA-76-4934 
        5.36         2.53 

$`TPTE2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       16.18         2.70         0.26         4.04         0.10        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       32.48        10.52        18.74        23.05        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.21         2.20         2.33        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
        8.65         3.19         5.46        10.65         5.29        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 
       19.04         3.12         0.23         2.20        53.98        37.02 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       28.47        14.93        18.28         7.04         3.88         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0241 TCGA-06-0644 
       12.43        22.49         0.33        10.32        14.96        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       20.94        13.58         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
        2.83         8.52         5.95         6.81         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 
        8.98         8.55         2.73         3.75         4.54         3.91 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.76         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        15.72        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       14.40         1.61        10.39        24.13         2.63        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       14.04        11.54        10.95        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.01        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.24        13.74         1.35         5.39         2.89        28.90 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 
        0.79         1.38        58.78        40.93        17.82         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 
        7.13        17.49         0.39         3.39         9.86         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.27        29.00        25.38         5.03         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        16.47         7.00         4.47 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78         5.39         5.29         5.42        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.75         2.53         1.18         3.09         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
        8.52        10.49         5.42        15.35         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       14.99        15.95         8.84         8.88         7.36        13.15 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       11.11         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
        4.31        14.33         7.46         4.77         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14        47.93        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

  TPTE2 MUTATED TPTE2 WILD-TYPE 
           2.53            0.07 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
          40.37           58.78 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
           8.96            8.28 
[1] "2.5 - 40.4 (9.0)" "0.1 - 58.8 (8.3)"
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0241      TCGA-06-0644      TCGA-06-0645 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0646      TCGA-06-0648      TCGA-06-0649      TCGA-06-0650 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0686      TCGA-06-0743      TCGA-06-0744      TCGA-06-0745 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0747      TCGA-06-0749      TCGA-06-0750      TCGA-06-0875 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0876      TCGA-06-0877      TCGA-06-0878      TCGA-06-0879 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0881      TCGA-06-0882      TCGA-06-0939      TCGA-06-1804 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2557      TCGA-06-2558      TCGA-06-2559      TCGA-06-2561 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2562      TCGA-06-2563      TCGA-06-2564      TCGA-06-2565 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2567      TCGA-06-2569      TCGA-06-2570      TCGA-06-5408 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5410      TCGA-06-5411      TCGA-06-5412      TCGA-06-5413 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5414      TCGA-06-5415      TCGA-06-5417      TCGA-06-5418 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-06-5856      TCGA-06-5858      TCGA-06-5859      TCGA-06-6388 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6389      TCGA-06-6390      TCGA-06-6391      TCGA-06-6693 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6694      TCGA-06-6695      TCGA-06-6697      TCGA-06-6698 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6699      TCGA-06-6700      TCGA-06-6701      TCGA-08-0386 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0615      TCGA-12-0616      TCGA-12-0618      TCGA-12-0619 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0688      TCGA-12-0692      TCGA-12-0821      TCGA-12-1597 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-3649      TCGA-12-3650      TCGA-12-3652      TCGA-12-3653 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-5295      TCGA-12-5299      TCGA-12-5301      TCGA-14-0740 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0781      TCGA-14-0786      TCGA-14-0787      TCGA-14-0789 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0790      TCGA-14-0813      TCGA-14-0817      TCGA-14-0862 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0871      TCGA-14-1043      TCGA-14-1395      TCGA-14-1450 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1456      TCGA-14-1823      TCGA-14-1825      TCGA-14-1829 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-2554      TCGA-14-3476      TCGA-14-4157      TCGA-15-0742 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-16-0846      TCGA-16-0861      TCGA-16-1045      TCGA-19-1390 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-1790      TCGA-19-2619      TCGA-19-2620      TCGA-19-2623 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2624      TCGA-19-2625      TCGA-19-2629      TCGA-19-2631 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-4068      TCGA-19-5947      TCGA-19-5950      TCGA-19-5951 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5952      TCGA-19-5953      TCGA-19-5954      TCGA-19-5955 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5958      TCGA-19-5959      TCGA-19-5960      TCGA-26-1439 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-1442      TCGA-26-5132      TCGA-26-5133      TCGA-26-5134 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5135      TCGA-26-5136      TCGA-26-5139      TCGA-26-6173 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-6174      TCGA-27-1830      TCGA-27-1831      TCGA-27-1832 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1833      TCGA-27-1834      TCGA-27-1835      TCGA-27-1836 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1837      TCGA-27-1838      TCGA-27-2518      TCGA-27-2519 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2521      TCGA-27-2523      TCGA-27-2524      TCGA-27-2526 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2527      TCGA-27-2528      TCGA-28-1747      TCGA-28-1753 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2499      TCGA-28-2502      TCGA-28-2509      TCGA-28-2513 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2514      TCGA-28-5204      TCGA-28-5207      TCGA-28-5208 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5209      TCGA-28-5211      TCGA-28-5213      TCGA-28-5214 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5215      TCGA-28-5216      TCGA-28-5218      TCGA-28-5219 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5220      TCGA-28-6450      TCGA-32-1970      TCGA-32-1977 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1979      TCGA-32-1980      TCGA-32-1982      TCGA-32-1986 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1991      TCGA-32-2491      TCGA-32-2494      TCGA-32-2495 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2615      TCGA-32-2632      TCGA-32-2634      TCGA-32-2638 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4208      TCGA-32-4209      TCGA-32-4210      TCGA-32-4211 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4213      TCGA-32-4719      TCGA-32-5222      TCGA-41-2571 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-2572      TCGA-41-2573      TCGA-41-2575      TCGA-41-3392 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-3393      TCGA-41-3915      TCGA-41-4097      TCGA-41-5651 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-6646      TCGA-74-6573      TCGA-74-6575      TCGA-74-6577 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6578      TCGA-74-6584      TCGA-76-4925      TCGA-76-4926 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4927      TCGA-76-4928      TCGA-76-4929      TCGA-76-4931 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4932      TCGA-76-4934      TCGA-76-4935      TCGA-76-6191 
"TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6192      TCGA-76-6193      TCGA-76-6280      TCGA-76-6282 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6285      TCGA-76-6286      TCGA-76-6656      TCGA-76-6657 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6661      TCGA-76-6662      TCGA-76-6663      TCGA-76-6664 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-81-5910      TCGA-81-5911      TCGA-87-5896 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
[1] "hr=" "1.8"
D13V2, continuous
D13V3, binary
                 cls
clus                0   1
  TPTE2 MUTATED     3   5
  TPTE2 WILD-TYPE  97 170
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TPTE2 MUTATED      3    5
  TPTE2 WILD-TYPE   97  170
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  FEMALE             3              97
  MALE               5             170
D13V4, continuous
                 vv
clus              GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  TPTE2 MUTATED                               0                   0
  TPTE2 WILD-TYPE                             6                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TPTE2 MUTATED                                 8
  TPTE2 WILD-TYPE                             257
D13V5, multiclass
                                 clus
vv                                TPTE2 MUTATED TPTE2 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)               0               6
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             8             257
D13V6, binary
                 cls
clus                0   1
  TPTE2 MUTATED     4   4
  TPTE2 WILD-TYPE 180  87
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TPTE2 MUTATED      4    4
  TPTE2 WILD-TYPE  180   87
     clus
vv    TPTE2 MUTATED TPTE2 WILD-TYPE
  NO              4             180
  YES             4              87
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
