| getCNExpCorrelation1 reducedseg | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/GBM-TP/3471856/all_data_by_genes.txt |
| getCNExpCorrelation1 mrnaexp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/3348654/GDAC_MergeDataFiles_3125075/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt |
| getCNExpCorrelation1 featurename | Hybridization.REF |
| getCNExpCorrelation1 threshold | none |
| getCNExpCorrelation1 method | pearson |
| getCNExpCorrelation1 cortablename | GBM-TP |
| getCNExpCorrelation1 figurename | OUTPUT |
| getCNExpCorrelation1 qatablename | STATS |
| writeCorReport2 type | miRNA |
| Execution Times: | |
| Submitted: | 15:49:23 06-06-13 |
| Completed: | |
| Elapsed: | 22 hrs 00 mins 15 secs |
step 1. getCNExpCorrelation [id: 417560] Calculates the correlations between the copy number and expression data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00287:20
| reducedseg | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/GBM-TP/3471856/all_data_by_genes.txt |
| mrnaexp | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/3348654/GDAC_MergeDataFiles_3125075/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt |
| featurename | Hybridization.REF |
| threshold | none |
| method | pearson |
| cortablename | GBM-TP |
| figurename | OUTPUT |
| qatablename | STATS |
| Output Files: | |
| GBM-TP.CORS.tsv | |
| STATS.QA.tsv | |
| .lsf.out | |
| OUTPUT.CORS.png | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 15:49:27 06-06-13 |
| Completed: | 02:46:46 07-06-13 |
| Elapsed: | 10 hrs 57 mins 19 secs |
step 2. writeCorReport [id: 417561] Generates the html report based on the correlation data
urn:lsid:broadinstitute.org:cancer.genome.analysis:00288:42
| pngname | OUTPUT.CORS.png |
| tablename | GBM-TP.CORS.tsv |
| type | miRNA |
| qatablename | STATS.QA.tsv |
| Output Files: | |
| nozzle.html | |
| .lsf.out | |
| nozzle.RData | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 15:49:27 06-06-13 |
| Completed: | 13:49:37 07-06-13 |
| Elapsed: | 22 hrs 00 mins 09 secs |
