
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/HNSC-TP/3472631/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/HNSC-TP/3351140/HNSC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=331, in cluster file=368, common to both=325
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 325
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               11               314 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               11               314 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               39               286 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               39               286 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
               31               294 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               31               294 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               22               303 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               22               303 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
               27               298 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               27               298 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              107               218 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              107               218 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               13               312 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               13               312 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                9               316 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                9               316 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
               82               243 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               82               243 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               30               295 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               30               295 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
               26               299 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               26               299 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               19               306 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               19               306 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
               73               252 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               73               252 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               45               280 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               45               280 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               49               276 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               49               276 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              134               191 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              134               191 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               39               286 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               39               286 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               50               275 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               50               275 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
                12                313 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                12                313 
[1] "10q gain"
[1] 3
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 6                319 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 6                319 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                16                309 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                16                309 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                16                309 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                16                309 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
                62                263 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                62                263 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                24                301 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                24                301 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                18                307 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                18                307 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                54                271 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                54                271 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                12                313 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                12                313 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                22                303 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                22                303 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                29                296 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                29                296 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                18                307 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                18                307 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                22                303 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                22                303 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                54                271 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                54                271 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                20                305 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                20                305 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                12                313 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                12                313 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                21                304 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                21                304 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
                66                259 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                66                259 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                70                255 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                70                255 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 9                316 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 9                316 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                40                285 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                40                285 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               20               305 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               20               305 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
               16               309 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               16               309 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
                4               321 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                4               321 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                9               316 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                9               316 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
              123               202 
      3P LOSS CNV 3P LOSS WILD-TYPE 
              123               202 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               19               306 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               19               306 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
               78               247 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               78               247 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               50               275 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               50               275 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
                8               317 
      5P LOSS CNV 5P LOSS WILD-TYPE 
                8               317 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               63               262 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               63               262 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               19               306 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               19               306 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               21               304 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               21               304 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
                5               320 
      7P LOSS CNV 7P LOSS WILD-TYPE 
                5               320 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                9               316 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                9               316 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
               71               254 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               71               254 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                6               319 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                6               319 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
               91               234 
      9P LOSS CNV 9P LOSS WILD-TYPE 
               91               234 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               31               294 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               31               294 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                48                277 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                48                277 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                26                299 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                26                299 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                43                282 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                43                282 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                62                263 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                62                263 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                11                314 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                11                314 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 7                318 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 7                318 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                63                262 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                63                262 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                16                309 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                16                309 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                24                301 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                24                301 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                12                313 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                12                313 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                25                300 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                25                300 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
                45                280 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                45                280 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 5                320 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 5                320 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                29                296 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                29                296 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                90                235 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                90                235 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
                28                297 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                28                297 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                21                304 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                21                304 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                21                304 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                21                304 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                10                315 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                10                315 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                58                267 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                58                267 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                25                300 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                25                300 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                7               318 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                7               318 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NUMBERPACKYEARSSMOKED"                 
[14] "YEAROFTOBACCOSMOKINGONSET"             
[15] "DISTANT.METASTASIS"                    
[16] "LYMPH.NODE.METASTASIS"                 
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "TUMOR.STAGECODE"                       
[19] "NEOPLASM.DISEASESTAGE"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 325 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415         1134          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
         140          133          557          310          535          422 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
         687          638         1152          427          436         2161 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
         624          192          412          310          142          194 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
         325          156          343          383          522          369 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
         395          240          436          348          810          875 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
         397          279          289          173          377          866 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
         252          493          351          360          352          380 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
          NA          413          274          207          228          143 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
         154          201          159           45          134           97 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
         276          201          188          224           42          177 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
          83          119           NA          114          100           46 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        1465         1207          654           NA         1183          841 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
         896         1028          317          341          128          870 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
          NA         1000         1057          984           NA           NA 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
          NA          814         1461         1377         1006          508 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
         693          900         2562          358         1662         1152 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
         798         1777         1521           NA         1050         1125 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
          NA          514           NA          362          311          345 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
         354          233          379          350          479           NA 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        1435         1190         1440         1244           NA          104 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
          NA          759          889           30          972           NA 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
        1036           NA          796           NA          997         1430 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
          NA          392          907          913          946          908 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
         898          929          216          156          180         1077 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
         910         1471         4115          522         3930         3295 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
        1438          584          546         2732         2663         2326 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
        2567         1969          519          406          540         1736 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
        1478         1007          215         1315         1246          405 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
         743          179           NA           NA           NA           NA 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
          NA           NA           NA           NA           NA         3835 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
          NA           NA           NA         3836         3380           NA 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
          NA           NA           NA           NA         3496         1724 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
          NA         1444         1095          953          797           NA 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        1099           NA           NA           NA           NA           NA 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        4334           NA           NA           NA          316          321 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
         236          828           NA          325          250          238 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
          77          152          153          127          105          127 
TCGA-D6-A4Z9 TCGA-D6-A4ZB TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
         112           NA         1149         1058          516          477 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
         548           NA          575          661          360          299 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
         369          368          324           35           14           13 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
          30           57          132            2            5           25 
TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
          NA           NA           31           55           44           30 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
          30          692          160          122          113           14 
TCGA-MT-A51X 
          34 
Variable 1:'AGE':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=116,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=213,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=94,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'NUMBERPACKYEARSSMOKED':	nDistinctValues=74,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'DISTANT.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'LYMPH.NODE.METASTASIS':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TUMOR.STAGECODE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOPLASM.DISEASESTAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [4] "NUMBERPACKYEARSSMOKED"                 
 [5] "YEAROFTOBACCOSMOKINGONSET"             
 [6] "DISTANT.METASTASIS"                    
 [7] "LYMPH.NODE.METASTASIS"                 
 [8] "NUMBER.OF.LYMPH.NODES"                 
 [9] "TUMOR.STAGECODE"                       
[10] "NEOPLASM.DISEASESTAGE"                 
[1] "TUMOR.?STAGE" "9"           
[1] "stage2"
vv
 T1  T2  T3 T4A T4B  TX 
 31  82  66 103   1  33 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 325 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=58, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=74, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=8, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=26, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN CNV         6   5
  1P GAIN WILD-TYPE 194 116
      1P GAIN CNV 1P GAIN WILD-TYPE 
               11               310 
      1P GAIN CNV 1P GAIN WILD-TYPE 
                5               116 
$`1P GAIN CNV`
TCGA-BA-5555 TCGA-CN-4727 TCGA-CR-6482 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5973 
        6.12         6.38        11.34        17.16        76.47        57.07 
TCGA-CV-6933 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7422 TCGA-DQ-5625 
       90.08         2.10        35.54        34.09        34.78 

$`1P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 
        5.92        35.41        29.92        48.36       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       84.39        64.73        17.06        13.35        17.75        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87        47.97        36.13        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94         0.07       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         3.68        37.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      1P GAIN CNV 1P GAIN WILD-TYPE 
             2.10              0.07 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            90.08            210.94 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            34.09             13.61 
[1] "2.1 - 90.1 (34.1)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          6    5
  1P GAIN WILD-TYPE   85  229
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  FEMALE           6                85
  MALE             5               229
D1V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          2    9
  1P GAIN WILD-TYPE   76  238
     clus
vv    1P GAIN CNV 1P GAIN WILD-TYPE
  NO            2                76
  YES           9               238
D1V5, continuous
D1V6, continuous
D1V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          0    0
  1P GAIN WILD-TYPE   65    6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  1P GAIN CNV         2   3   0   0   1   2   0   2
  1P GAIN WILD-TYPE 106  35   7   2  57  32   5  61
D1V8, multiclass
D1V9, continuous
D1V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1P GAIN CNV             0        1         2         6         0
  1P GAIN WILD-TYPE      21       50        46       146         6
D1V11, multiclass

Clustering(2) Variable = 1q gain
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN CNV        23  16
  1Q GAIN WILD-TYPE 177 105
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               39               282 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               16               105 
$`1Q GAIN CNV`
TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-4227 TCGA-BB-7871 TCGA-BB-8601 
        6.12        14.79         2.07         4.37        14.04        20.52 
TCGA-CN-4727 TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6013 TCGA-CN-6023 TCGA-CR-6482 
        6.38        11.57         9.01         5.06         6.18        11.34 
TCGA-CR-7370 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 
        3.42        29.82       135.29        17.16       108.33        89.82 
TCGA-CV-5442 TCGA-CV-5979 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6951 
       76.47        43.23        90.08         9.70         5.46        30.05 
TCGA-CV-6962 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7407 
        4.14        71.21        31.33        95.34         2.10        35.54 
TCGA-CV-7409 TCGA-CV-7422 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6827 TCGA-DQ-5625 
       17.82        34.09        16.60         7.76         4.18        34.78 
TCGA-DQ-5629 TCGA-HD-7754 TCGA-HL-7533 
       16.96         0.82        22.75 

$`1Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.60        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       17.59        13.87        22.59        20.98        37.87        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
       71.05         6.31        13.55        10.19         4.67        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        13.58 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       47.18        39.12        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 
        5.13         5.92        35.41        29.92        48.36       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
       47.28        19.20        17.95        87.55        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        40.96        13.32        24.43         5.88         2.14 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        15.06         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        18.97        17.10         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        57.47       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 
        0.46        22.85        25.02        25.94         0.07       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.39        10.55        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 
        7.82         2.53         5.00         5.03         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        3.68        37.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        1.15         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        0.99         5.26         4.01         3.72         0.46         1.12 

      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             0.82              0.07 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
           135.29            210.94 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
           16.600            13.565 
[1] "0.8 - 135.3 (16.6)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV         12   27
  1Q GAIN WILD-TYPE   79  207
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  FEMALE          12                79
  MALE            27               207
D2V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV         13   26
  1Q GAIN WILD-TYPE   65  221
     clus
vv    1Q GAIN CNV 1Q GAIN WILD-TYPE
  NO           13                65
  YES          26               221
D2V5, continuous
D2V6, continuous
D2V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV          4    1
  1Q GAIN WILD-TYPE   61    5
    clus
vv   1Q GAIN CNV 1Q GAIN WILD-TYPE
  M0           4                61
  MX           1                 5
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  1Q GAIN CNV         5   5   2   1   8   7   1   8
  1Q GAIN WILD-TYPE 103  33   5   1  50  27   4  55
D2V8, multiclass
D2V9, continuous
D2V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1Q GAIN CNV             1        2         4        24         1
  1Q GAIN WILD-TYPE      20       49        44       128         5
D2V11, multiclass

Clustering(3) Variable = 2p gain
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN CNV        18  13
  2P GAIN WILD-TYPE 182 108
      2P GAIN CNV 2P GAIN WILD-TYPE 
               31               290 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               13               108 
$`2P GAIN CNV`
TCGA-BA-4075 TCGA-CN-4727 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 
        9.30         6.38         6.18         1.38         5.82        27.65 
TCGA-CR-5247 TCGA-CR-7383 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 
       11.77        17.13         5.13         5.92       135.29        89.82 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7178 
       90.08        26.43        11.24        15.06         4.14        71.21 
TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7421 
       56.68        31.33        95.34        47.97        36.13         0.07 
TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7589 
      100.54        16.60         7.76        10.68        16.96        18.90 
TCGA-DQ-7592 
        9.83 

$`2P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        7.36         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        29.92        48.36        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       21.86       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       12.89        21.76        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         3.68        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       14.04        21.73        11.84        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        1.15         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      2P GAIN CNV 2P GAIN WILD-TYPE 
             0.07              0.07 
      2P GAIN CNV 2P GAIN WILD-TYPE 
           135.29            210.94 
      2P GAIN CNV 2P GAIN WILD-TYPE 
            16.60             13.61 
[1] "0.1 - 135.3 (16.6)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV"       "2P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "2P GAIN CNV"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV          6   25
  2P GAIN WILD-TYPE   85  209
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  FEMALE           6                85
  MALE            25               209
D3V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV          7   24
  2P GAIN WILD-TYPE   71  223
     clus
vv    2P GAIN CNV 2P GAIN WILD-TYPE
  NO            7                71
  YES          24               223
D3V5, continuous
D3V6, continuous
D3V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV          4    0
  2P GAIN WILD-TYPE   61    6
    clus
vv   2P GAIN CNV 2P GAIN WILD-TYPE
  M0           4                61
  MX           0                 6
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  2P GAIN CNV       11  4  1   1   2   4  0  8
  2P GAIN WILD-TYPE 97 34  6   1  56  30  5 55
D3V8, multiclass
D3V9, continuous
D3V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2P GAIN CNV             2        6         6        13         0
  2P GAIN WILD-TYPE      19       45        42       139         6
D3V11, multiclass

Clustering(4) Variable = 2q gain
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN CNV        11  11
  2Q GAIN WILD-TYPE 189 110
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               22               299 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               11               110 
$`2Q GAIN CNV`
TCGA-BA-4075 TCGA-CN-4727 TCGA-CQ-5329 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-7383 
        9.30         6.38        27.65        14.96        11.77        17.13 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6962 
      135.29       108.33        89.82        26.43        15.06         4.14 
TCGA-CV-7235 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7421 TCGA-CV-7423 
       56.68        95.34        47.97        36.13         0.07       100.54 
TCGA-CX-7086 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7592 
        7.76        16.96        18.90         9.83 

$`2Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35        13.25         4.21        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       33.07        16.70        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       48.36        17.16       129.21        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        12.03        42.35        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       21.76        71.21        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       36.00        31.33        26.20        18.97        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87         2.10        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       16.60         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.03         4.18         3.45         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       34.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             0.07              0.07 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
           135.29            210.94 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
           18.015            13.350 
[1] "0.1 - 135.3 (18.0)" "0.1 - 210.9 (13.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          4   18
  2Q GAIN WILD-TYPE   87  216
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  FEMALE           4                87
  MALE            18               216
D4V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          7   15
  2Q GAIN WILD-TYPE   71  232
     clus
vv    2Q GAIN CNV 2Q GAIN WILD-TYPE
  NO            7                71
  YES          15               232
D4V5, continuous
D4V6, continuous
D4V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          2    0
  2Q GAIN WILD-TYPE   63    6
    clus
vv   2Q GAIN CNV 2Q GAIN WILD-TYPE
  M0           2                63
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  2Q GAIN CNV         8   2   0   1   3   1   0   7
  2Q GAIN WILD-TYPE 100  36   7   1  55  33   5  56
D4V8, multiclass
D4V9, continuous
D4V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2Q GAIN CNV             1        4         3        10         0
  2Q GAIN WILD-TYPE      20       47        45       142         6
D4V11, multiclass

Clustering(5) Variable = 3p gain
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN CNV        19   8
  3P GAIN WILD-TYPE 181 113
      3P GAIN CNV 3P GAIN WILD-TYPE 
               27               294 
      3P GAIN CNV 3P GAIN WILD-TYPE 
                8               113 
$`3P GAIN CNV`
TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4723 
       37.28        57.90        57.44        95.05         4.60        13.55 
TCGA-CN-4731 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
       12.59         6.81         5.06         9.07         6.18         1.38 
TCGA-CQ-5323 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 
       48.16        34.75        13.25        58.42        50.01        18.51 
TCGA-CR-6487 TCGA-CR-7368 TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-7178 
        7.66        40.90        76.47        33.11        13.32        71.21 
TCGA-CV-7409 TCGA-CV-7437 TCGA-HD-8314 
       17.82        16.60         1.45 

$`3P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78         6.12         5.88         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        6.12         9.04         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       71.05        20.52         6.31        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68         5.13        11.28        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 
       13.58         9.01         7.50         4.70         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 
        1.48         4.41         3.19         6.61         7.36         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.88        32.35         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 
       11.77        54.64        37.87        26.24        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        57.47        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        4.18         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.02         1.81         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      3P GAIN CNV 3P GAIN WILD-TYPE 
             1.38              0.07 
      3P GAIN CNV 3P GAIN WILD-TYPE 
            95.05            210.94 
      3P GAIN CNV 3P GAIN WILD-TYPE 
            17.82             13.61 
[1] "1.4 - 95.0 (17.8)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
      "3P GAIN CNV" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3P GAIN WILD-TYPE"       "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"3P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          5   22
  3P GAIN WILD-TYPE   86  212
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  FEMALE           5                86
  MALE            22               212
D5V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          9   18
  3P GAIN WILD-TYPE   69  229
     clus
vv    3P GAIN CNV 3P GAIN WILD-TYPE
  NO            9                69
  YES          18               229
D5V5, continuous
D5V6, continuous
D5V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          7    0
  3P GAIN WILD-TYPE   58    6
    clus
vv   3P GAIN CNV 3P GAIN WILD-TYPE
  M0           7                58
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  3P GAIN CNV         8   3   1   0   6   3   1   5
  3P GAIN WILD-TYPE 100  35   6   2  52  31   4  58
D5V8, multiclass
D5V9, continuous
D5V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3P GAIN CNV             2        4         3        13         1
  3P GAIN WILD-TYPE      19       47        45       139         5
D5V11, multiclass

Clustering(6) Variable = 3q gain
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN CNV        69  37
  3Q GAIN WILD-TYPE 131  84
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              106               215 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               37                84 
$`3Q GAIN CNV`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5557 
       37.28         9.07         8.15         6.25        57.90         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4223 
       57.44         5.00        14.79        12.99         7.76        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-7864 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
        4.60         4.37        22.59        14.33        71.05        20.52 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       13.55         4.67        10.68         5.13        11.28        12.59 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 
        7.89        11.44        28.77         9.50        12.39        28.47 
TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
       11.57        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
        4.41         3.19         9.07         6.18         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5329 TCGA-CQ-6220 TCGA-CQ-6223 
        3.91         1.51        48.16        27.65        32.35        34.75 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-6467 
       13.25        14.96        33.07        84.23        37.87        58.42 
TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6480 TCGA-CR-6487 TCGA-CR-7365 TCGA-CR-7368 
       50.01        18.51        11.90         7.66        39.12        40.90 
TCGA-CR-7369 TCGA-CR-7385 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5436 
       35.84        32.78        29.92        48.36       135.29        19.20 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 
       89.82        76.47        64.73        57.07        33.11        40.96 
TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6951 
       13.32        90.08         9.70        26.43        42.35        30.05 
TCGA-CV-6954 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7243 
       65.82         5.23         1.84        52.31        71.21        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7261 
       26.20        18.97        17.10        95.34        11.87        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 
       18.41        57.47        17.82         0.46         0.07        14.86 
TCGA-CV-7434 TCGA-CV-7437 TCGA-DQ-5624 TCGA-DQ-7592 TCGA-DQ-7595 TCGA-HD-7754 
        7.13        16.60        37.78         9.83        10.65         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        1.02         1.81         1.45        22.75 

$`3Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 
       15.16         9.30        13.64        27.78         6.12         5.88 
TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4224 
       53.75         8.02         2.07         3.72         6.12         9.04 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        17.59        13.87        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4733 TCGA-CN-4735 
       14.04         6.31        10.19         6.38        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       12.99        14.33        26.63        13.05         9.17         5.69 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6024 
        7.50         6.61         5.23         1.48         6.61         7.36 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5324 TCGA-CQ-5325 
        2.73         3.68         3.75         3.29        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        38.89        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
        4.21        28.60        32.88        32.35         4.21        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 
       48.03        45.27        16.70        22.78        29.59        11.77 
TCGA-CR-5248 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 
       54.64        26.24        39.52        34.52        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
        6.02        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7371 
       15.75         9.27        47.18        47.34         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
        5.13         5.92        35.41        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 
       47.28        17.95        87.55        84.39        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 
       17.75        48.59         7.07        43.23        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        2.14         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        12.03        15.06         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
        9.01        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
        4.73        47.47        36.00         4.96        47.97         2.10 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       35.54       210.94        89.33         9.67        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 
        3.48        16.27        84.49        19.73       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         4.18         3.68        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.13        12.10         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8634 TCGA-HD-8635 
        1.87         4.34         0.07         0.16         0.99         0.99 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             0.07              0.07 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
           135.29            210.94 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
            14.91             13.25 
[1] "0.1 - 135.3 (14.9)" "0.1 - 210.9 (13.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV"       "3Q GAIN CNV"       "3Q GAIN CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"3Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         21   86
  3Q GAIN WILD-TYPE   70  148
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  FEMALE          21                70
  MALE            86               148
D6V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         38   69
  3Q GAIN WILD-TYPE   40  178
     clus
vv    3Q GAIN CNV 3Q GAIN WILD-TYPE
  NO           38                40
  YES          69               178
D6V5, continuous
D6V6, continuous
D6V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         18    2
  3Q GAIN WILD-TYPE   47    4
    clus
vv   3Q GAIN CNV 3Q GAIN WILD-TYPE
  M0          18                47
  MX           2                 4
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  3Q GAIN CNV       31 16  3   1  21  11  2 19
  3Q GAIN WILD-TYPE 77 22  4   1  37  23  3 44
D6V8, multiclass
D6V9, continuous
D6V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3Q GAIN CNV             4       11        17        56         2
  3Q GAIN WILD-TYPE      17       40        31        96         4
D6V11, multiclass

Clustering(7) Variable = 4p gain
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN CNV         9   4
  4P GAIN WILD-TYPE 191 117
      4P GAIN CNV 4P GAIN WILD-TYPE 
               13               308 
      4P GAIN CNV 4P GAIN WILD-TYPE 
                4               117 
$`4P GAIN CNV`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4737 TCGA-CQ-6224 TCGA-CV-5973 
       12.99         4.60         6.38         7.89        32.35        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6954 TCGA-CV-7102 TCGA-CV-7255 TCGA-DQ-5625 
       48.59        33.11        65.82         1.84         2.10        34.78 
TCGA-DQ-7592 
        9.83 

$`4P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.21        28.60        32.35        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5978 
       84.39        64.73        17.06        13.35        17.75         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68        37.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        21.73        11.84        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        1.15         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      4P GAIN CNV 4P GAIN WILD-TYPE 
             1.84              0.07 
      4P GAIN CNV 4P GAIN WILD-TYPE 
            65.82            210.94 
      4P GAIN CNV 4P GAIN WILD-TYPE 
           12.990            13.955 
[1] "1.8 - 65.8 (13.0)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "4P GAIN CNV"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "4P GAIN CNV"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "4P GAIN CNV"       "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          4    9
  4P GAIN WILD-TYPE   87  225
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  FEMALE           4                87
  MALE             9               225
D7V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          5    8
  4P GAIN WILD-TYPE   73  239
     clus
vv    4P GAIN CNV 4P GAIN WILD-TYPE
  NO            5                73
  YES           8               239
D7V5, continuous
D7V6, continuous
D7V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          0    0
  4P GAIN WILD-TYPE   65    6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  4P GAIN CNV         2   1   1   0   4   0   0   5
  4P GAIN WILD-TYPE 106  37   6   2  54  34   5  58
D7V8, multiclass
D7V9, continuous
D7V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4P GAIN CNV             0        0         1         8         0
  4P GAIN WILD-TYPE      21       51        47       144         6
D7V11, multiclass

Clustering(8) Variable = 4q gain
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN CNV         5   4
  4Q GAIN WILD-TYPE 195 117
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                9               312 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                4               117 
$`4Q GAIN CNV`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-7102 
       12.99         4.60         6.38        19.20        33.11         1.84 
TCGA-CV-7245 TCGA-CV-7415 TCGA-DQ-5625 
       26.20        22.85        34.78 

$`4Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        47.28        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 
        4.18         3.45         4.18         3.68        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      4Q GAIN CNV 4Q GAIN WILD-TYPE 
             1.84              0.07 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
            34.78            210.94 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
           19.200            13.755 
[1] "1.8 - 34.8 (19.2)"  "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          2    7
  4Q GAIN WILD-TYPE   89  227
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  FEMALE           2                89
  MALE             7               227
D8V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          2    7
  4Q GAIN WILD-TYPE   76  240
     clus
vv    4Q GAIN CNV 4Q GAIN WILD-TYPE
  NO            2                76
  YES           7               240
D8V5, continuous
D8V6, continuous
D8V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          0    0
  4Q GAIN WILD-TYPE   65    6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  4Q GAIN CNV         2   0   1   0   2   1   0   3
  4Q GAIN WILD-TYPE 106  38   6   2  56  33   5  60
D8V8, multiclass
D8V9, continuous
D8V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4Q GAIN CNV             0        0         0         6         0
  4Q GAIN WILD-TYPE      21       51        48       146         6
D8V11, multiclass

Clustering(9) Variable = 5p gain
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN CNV        52  28
  5P GAIN WILD-TYPE 148  93
      5P GAIN CNV 5P GAIN WILD-TYPE 
               80               241 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               28                93 
$`5P GAIN CNV`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        9.30         6.12        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 
       14.79         3.72         7.76        95.05         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7864 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4727 
       10.19        22.59        71.05        20.52        13.55         6.38 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-5366 
        5.13        11.28        12.59        12.99        14.33        11.84 
TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5330 
        7.50         6.18         1.38         3.91         3.29        29.46 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6471 
       32.88        32.35        16.70        84.23        58.42        39.52 
TCGA-CR-6473 TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7404 
       36.99        12.89        31.10         5.13         5.92        48.36 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5970 TCGA-CV-6441 TCGA-CV-6936 
       47.28        17.95        76.47        13.35         5.88         5.46 
TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       20.52        11.24        65.82         7.13         8.38         2.50 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
      111.12        18.81         1.84        52.31        12.89        71.21 
TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7437 
       10.75        26.20        17.82        25.02         0.07        16.60 
TCGA-CX-7086 TCGA-D6-8568 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 
        7.76         3.45        16.96        15.68        18.02        21.73 
TCGA-DQ-7592 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 
        9.83         4.34         0.16         1.02         1.81         0.99 
TCGA-IQ-7630 TCGA-MT-A51X 
        5.26         1.12 

$`5P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6871 TCGA-BA-6872 
       27.78        57.90         5.88         7.96         2.07        12.99 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        6.12         9.04         4.60        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       37.87        14.04        14.33         6.31        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 
       10.68        17.16        12.13         7.89        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
       28.47         8.28        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
        6.61         7.36         5.82         2.73         3.68         3.75 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.35        34.75        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 
       48.03        45.27        33.07        22.78        29.59        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6474 
       54.64        37.87        26.24        50.01        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 
       30.02        29.85        29.52        30.54         7.10        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 
       29.92       135.29        17.16       129.21       108.33        19.20 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 
       89.82        87.55        84.39        64.73        17.06        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6938 
       13.32        24.43        90.08         2.14         9.70         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 
       15.06        30.05         6.08        53.92        10.98        28.31 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
        4.14        64.80       126.12        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
        5.23        21.76       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
      142.49         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         4.18         3.68        37.78        34.78 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       14.04        18.90        11.84        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
        1.15         0.46         0.43         0.99         1.87         0.07 
TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         1.45         0.99        22.75         4.01         3.72 
TCGA-MT-A51W 
        0.46 

      5P GAIN CNV 5P GAIN WILD-TYPE 
             0.07              0.07 
      5P GAIN CNV 5P GAIN WILD-TYPE 
           111.12            210.94 
      5P GAIN CNV 5P GAIN WILD-TYPE 
            12.89             14.86 
[1] "0.1 - 111.1 (12.9)" "0.1 - 210.9 (14.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
      "5P GAIN CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
      "5P GAIN CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV"       "5P GAIN CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
      "5P GAIN CNV" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         16   66
  5P GAIN WILD-TYPE   75  168
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  FEMALE          16                75
  MALE            66               168
D9V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         20   62
  5P GAIN WILD-TYPE   58  185
     clus
vv    5P GAIN CNV 5P GAIN WILD-TYPE
  NO           20                58
  YES          62               185
D9V5, continuous
D9V6, continuous
D9V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         11    4
  5P GAIN WILD-TYPE   54    2
    clus
vv   5P GAIN CNV 5P GAIN WILD-TYPE
  M0          11                54
  MX           4                 2
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  5P GAIN CNV       22 10  3   0  15   9  1 20
  5P GAIN WILD-TYPE 86 28  4   2  43  25  4 43
D9V8, multiclass
D9V9, continuous
D9V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5P GAIN CNV             3        9        14        40         1
  5P GAIN WILD-TYPE      18       42        34       112         5
D9V11, multiclass

Clustering(10) Variable = 5q gain
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN CNV        18  10
  5Q GAIN WILD-TYPE 182 111
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               28               293 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               10               111 
$`5Q GAIN CNV`
TCGA-BA-6869 TCGA-BA-6870 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7864 
        8.02        14.79        95.05         4.37        10.19        22.59 
TCGA-CN-4738 TCGA-CN-6011 TCGA-CN-6023 TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 
       14.33         7.50         6.18        32.35        16.70        84.23 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-6441 TCGA-CV-6936 
       39.52        36.99        12.89        76.47         5.88         5.46 
TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7416 
       65.82         7.13         1.84        71.21        26.20        25.02 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-HD-8635 
       16.96        15.68        21.73         0.99 

$`5Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         5.00         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7862 
        7.76         6.12         9.04         4.60        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99         7.89        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       13.58         9.01         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        29.59        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       26.24        58.42        50.01        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       13.32        24.43        90.08         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 
        5.23        52.31        12.89        21.76        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        31.33        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       37.78        34.78        18.02        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 
        0.82         1.02         1.81         1.45         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      5Q GAIN CNV 5Q GAIN WILD-TYPE 
             0.99              0.07 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            95.05            210.94 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            16.19             13.55 
[1] "1.0 - 95.0 (16.2)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV"       "5Q GAIN CNV" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV          7   23
  5Q GAIN WILD-TYPE   84  211
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  FEMALE           7                84
  MALE            23               211
D10V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV         10   20
  5Q GAIN WILD-TYPE   68  227
     clus
vv    5Q GAIN CNV 5Q GAIN WILD-TYPE
  NO           10                68
  YES          20               227
D10V5, continuous
D10V6, continuous
D10V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV          3    1
  5Q GAIN WILD-TYPE   62    5
    clus
vv   5Q GAIN CNV 5Q GAIN WILD-TYPE
  M0           3                62
  MX           1                 5
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  5Q GAIN CNV         7   4   3   0   4   3   0   7
  5Q GAIN WILD-TYPE 101  34   4   2  54  31   5  56
D10V8, multiclass
D10V9, continuous
D10V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5Q GAIN CNV             1        0         5        17         0
  5Q GAIN WILD-TYPE      20       51        43       135         6
D10V11, multiclass

Clustering(11) Variable = 6p gain
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN CNV        17   9
  6P GAIN WILD-TYPE 183 112
      6P GAIN CNV 6P GAIN WILD-TYPE 
               26               295 
      6P GAIN CNV 6P GAIN WILD-TYPE 
                9               112 
$`6P GAIN CNV`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BB-4224 TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 
        9.30         6.12         9.04        13.55         9.50         8.28 
TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-7368 
        5.82        27.65         4.21        16.70        11.77        40.90 
TCGA-CR-7389 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-6003 TCGA-CV-6933 
       12.89        29.92       135.29        76.47        40.96        90.08 
TCGA-CV-6954 TCGA-CV-6959 TCGA-CV-7243 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7415 
       65.82         8.38        31.33         2.10        35.54        22.85 
TCGA-DQ-5625 TCGA-HD-7917 
       34.78         1.02 

$`6P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4725 
       14.04        14.33        71.05        20.52         6.31        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       26.63        28.77        13.05         9.17         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         1.38         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       45.27        33.07        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.13         5.92        35.41        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
       47.97        36.13        18.41        57.47        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        1.15         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         0.82         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      6P GAIN CNV 6P GAIN WILD-TYPE 
             1.02              0.07 
      6P GAIN CNV 6P GAIN WILD-TYPE 
           135.29            210.94 
      6P GAIN CNV 6P GAIN WILD-TYPE 
           15.125            13.870 
[1] "1.0 - 135.3 (15.1)" "0.1 - 210.9 (13.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"6P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          7   19
  6P GAIN WILD-TYPE   84  215
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  FEMALE           7                84
  MALE            19               215
D11V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          2   24
  6P GAIN WILD-TYPE   76  223
     clus
vv    6P GAIN CNV 6P GAIN WILD-TYPE
  NO            2                76
  YES          24               223
D11V5, continuous
D11V6, continuous
D11V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          3    0
  6P GAIN WILD-TYPE   62    6
    clus
vv   6P GAIN CNV 6P GAIN WILD-TYPE
  M0           3                62
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  6P GAIN CNV         8   4   0   1   3   3   1   6
  6P GAIN WILD-TYPE 100  34   7   1  55  31   4  57
D11V8, multiclass
D11V9, continuous
D11V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6P GAIN CNV             1        3         6        11         1
  6P GAIN WILD-TYPE      20       48        42       141         5
D11V11, multiclass

Clustering(12) Variable = 6q gain
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN CNV        10   9
  6Q GAIN WILD-TYPE 190 112
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               19               302 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                9               112 
$`6Q GAIN CNV`
TCGA-BA-4075 TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 TCGA-CQ-5334 TCGA-CQ-7067 
        9.30        13.55         9.50         8.28         4.21        16.70 
TCGA-CR-5247 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 
       11.77       135.29        76.47        57.07        40.96        90.08 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7255 TCGA-CV-7415 TCGA-CV-7434 TCGA-DQ-5625 
        8.38         4.14         2.10        22.85         7.13        34.78 
TCGA-HD-7917 
        1.02 

$`6Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39        28.47        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       17.75        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       65.82        10.98         7.13        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       11.87        47.97        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.82       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68        37.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.07         0.16         0.82         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      6Q GAIN CNV 6Q GAIN WILD-TYPE 
             1.02              0.07 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
           135.29            210.94 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
            11.77             14.04 
[1] "1.0 - 135.3 (11.8)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          6   13
  6Q GAIN WILD-TYPE   85  221
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  FEMALE           6                85
  MALE            13               221
D12V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          1   18
  6Q GAIN WILD-TYPE   77  229
     clus
vv    6Q GAIN CNV 6Q GAIN WILD-TYPE
  NO            1                77
  YES          18               229
D12V5, continuous
D12V6, continuous
D12V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          2    0
  6Q GAIN WILD-TYPE   63    6
    clus
vv   6Q GAIN CNV 6Q GAIN WILD-TYPE
  M0           2                63
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  6Q GAIN CNV         7   4   0   1   2   1   1   3
  6Q GAIN WILD-TYPE 101  34   7   1  56  33   4  60
D12V8, multiclass
D12V9, continuous
D12V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6Q GAIN CNV             1        1         6         8         1
  6Q GAIN WILD-TYPE      20       50        42       144         5
D12V11, multiclass

Clustering(13) Variable = 7p gain
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN CNV        46  27
  7P GAIN WILD-TYPE 154  94
      7P GAIN CNV 7P GAIN WILD-TYPE 
               73               248 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               27                94 
$`7P GAIN CNV`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BB-7863 
       15.16         9.30        13.64         8.15         6.12        13.87 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4730 TCGA-CN-4737 TCGA-CN-6011 TCGA-CN-6012 
       20.52         6.31        11.28         7.89         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 
        5.06         6.18         7.36         1.38         5.82        27.65 
TCGA-CQ-6225 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-7364 
       13.25        16.70        22.78        18.51        16.90        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7390 TCGA-CR-7398 
       39.12        47.34        19.92        26.17        29.82         5.13 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
       17.16       129.21       108.33        89.82        76.47        64.73 
TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 
       90.08         5.46        15.06        30.05        53.92        65.82 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 
        4.14       126.12         5.23        21.76        71.21        56.68 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7409 
       31.33        18.97        47.97         2.10        36.13        17.82 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 
       25.02       100.54        14.86        16.60        21.99         7.76 
TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 
       27.22        10.68         4.18        34.78        16.96        18.90 
TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 TCGA-IQ-7631 
        0.46         0.07         0.16         1.02         0.99         4.01 
TCGA-IQ-7632 
        3.72 

$`7P GAIN WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07         6.25        27.78        57.90         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        7.96        53.75        57.44         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 
        2.07        12.99         3.72         7.76         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        6.61         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5243 
       26.76        48.03        45.27        33.07        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       39.52        34.52        36.99         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
        9.27        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7385 
       29.23         0.99        31.96        34.06        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       48.36       135.29        47.28        19.20        17.95        87.55 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        5.88         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
        6.08        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
        1.84        52.31        12.89        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       11.87        18.41        57.47        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 
       19.73         7.13       142.49         6.38        10.39        10.55 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 
        3.45         4.18         3.68        37.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       10.65         1.15         0.43         0.99         1.87         4.34 
TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        0.82         1.81         1.45         0.99        22.75         5.26 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      7P GAIN CNV 7P GAIN WILD-TYPE 
             0.07              0.07 
      7P GAIN CNV 7P GAIN WILD-TYPE 
           129.21            210.94 
      7P GAIN CNV 7P GAIN WILD-TYPE 
            16.90             13.02 
[1] "0.1 - 129.2 (16.9)" "0.1 - 210.9 (13.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"7P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV         18   55
  7P GAIN WILD-TYPE   73  179
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  FEMALE          18                73
  MALE            55               179
D13V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV         18   55
  7P GAIN WILD-TYPE   60  192
     clus
vv    7P GAIN CNV 7P GAIN WILD-TYPE
  NO           18                60
  YES          55               192
D13V5, continuous
D13V6, continuous
D13V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV         11    2
  7P GAIN WILD-TYPE   54    4
    clus
vv   7P GAIN CNV 7P GAIN WILD-TYPE
  M0          11                54
  MX           2                 4
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  7P GAIN CNV       28  7  1   0   8  13  1 13
  7P GAIN WILD-TYPE 80 31  6   2  50  21  4 50
D13V8, multiclass
D13V9, continuous
D13V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7P GAIN CNV             6       14        11        35         2
  7P GAIN WILD-TYPE      15       37        37       117         4
D13V11, multiclass

Clustering(14) Variable = 7q gain
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN CNV        29  16
  7Q GAIN WILD-TYPE 171 105
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               45               276 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               16               105 
$`7Q GAIN CNV`
TCGA-BB-7863 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-5360 TCGA-CN-6012 
       13.87        20.52         6.31         6.38        28.47         4.70 
TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-6225 
        5.06         6.18         7.36         1.38         5.82        13.25 
TCGA-CQ-7067 TCGA-CR-7390 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       16.70        29.82        17.16       129.21       108.33        89.82 
TCGA-CV-5442 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 
       76.47        90.08        11.24        15.06        30.05         4.14 
TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7247 
      126.12         5.23        21.76        71.21        56.68        18.97 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7424 TCGA-CV-7437 TCGA-CX-7086 
       47.97        36.13        25.02        14.86        16.60         7.76 
TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-8298 
       10.68         4.18        34.78        16.96        18.90         0.46 
TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-7631 
        0.16         1.02         4.01 

$`7Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
        4.60         4.37        18.31        10.19        17.59        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4723 
       20.98        37.87        14.04        14.33        71.05        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        6.61         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
       28.60        32.35        32.88        34.75        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 
       14.96        26.76        48.03        45.27        33.07        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
       47.28        19.20        17.95        87.55        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 
       26.43       126.08        19.79        12.03        42.35         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 
        9.01         1.84        52.31        12.89        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87         2.10        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       22.85        25.94         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5630 
        5.03         3.45         4.18         3.68        37.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       12.10        10.65         1.15         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        4.34         0.07         0.82         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        0.99        22.75         5.26         3.72         0.46         1.12 

      7Q GAIN CNV 7Q GAIN WILD-TYPE 
             0.16              0.07 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
           129.21            210.94 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
            16.60             13.45 
[1] "0.2 - 129.2 (16.6)" "0.1 - 210.9 (13.4)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV         10   35
  7Q GAIN WILD-TYPE   81  199
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  FEMALE          10                81
  MALE            35               199
D14V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV         11   34
  7Q GAIN WILD-TYPE   67  213
     clus
vv    7Q GAIN CNV 7Q GAIN WILD-TYPE
  NO           11                67
  YES          34               213
D14V5, continuous
D14V6, continuous
D14V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV          4    1
  7Q GAIN WILD-TYPE   61    5
    clus
vv   7Q GAIN CNV 7Q GAIN WILD-TYPE
  M0           4                61
  MX           1                 5
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  7Q GAIN CNV       18  3  1   0   6   7  0  9
  7Q GAIN WILD-TYPE 90 35  6   2  52  27  5 54
D14V8, multiclass
D14V9, continuous
D14V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7Q GAIN CNV             5        9         8        20         0
  7Q GAIN WILD-TYPE      16       42        40       132         6
D14V11, multiclass

Clustering(15) Variable = 8p gain
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN CNV        39  10
  8P GAIN WILD-TYPE 161 111
      8P GAIN CNV 8P GAIN WILD-TYPE 
               49               272 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               10               111 
$`8P GAIN CNV`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 
        9.30         6.12        57.44         2.07        95.05         9.04 
TCGA-BB-4225 TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4729 
        4.60        22.59        37.87        20.52        13.55         5.13 
TCGA-CN-4731 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-6024 
       12.59        11.44        26.63         9.17         9.50         7.36 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CQ-5330 TCGA-CQ-6224 TCGA-CQ-7068 TCGA-CR-6467 
        3.91         3.68        29.46        32.35        22.78        58.42 
TCGA-CR-6470 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7389 TCGA-CV-5430 
       50.01        11.34        47.34         3.42        12.89       135.29 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 
       89.82        76.47        48.59        33.11        40.96        13.32 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6948 TCGA-CV-7243 TCGA-CV-7253 
        2.14         5.46        20.52        42.35        31.33        11.87 
TCGA-CV-7409 TCGA-CV-7428 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-7588 
       17.82        54.90         7.76        10.68         7.82        14.04 
TCGA-HD-8314 
        1.45 

$`8P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78        57.90         5.88         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        8.02        14.79        12.99         3.72         7.76         6.12 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.37        18.31        10.19        17.59        13.87        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33        71.05         6.31        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        6.38        10.68        11.28        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5359 
        7.89        14.33        28.77        13.05         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        27.65        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       37.87        26.24        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95        87.55        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 
       13.35        17.75        57.07         7.07        43.23        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        5.88        90.08         9.70         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        57.47        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 
      100.54        14.86        56.48       156.49         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      8P GAIN CNV 8P GAIN WILD-TYPE 
             1.45              0.07 
      8P GAIN CNV 8P GAIN WILD-TYPE 
           135.29            210.94 
      8P GAIN CNV 8P GAIN WILD-TYPE 
           13.550            13.955 
[1] "1.4 - 135.3 (13.6)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"8P GAIN WILD-TYPE" 
[1] "hr=" "2.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV          9   40
  8P GAIN WILD-TYPE   82  194
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  FEMALE           9                82
  MALE            40               194
D15V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV         11   38
  8P GAIN WILD-TYPE   67  209
     clus
vv    8P GAIN CNV 8P GAIN WILD-TYPE
  NO           11                67
  YES          38               209
D15V5, continuous
D15V6, continuous
D15V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV          7    1
  8P GAIN WILD-TYPE   58    5
    clus
vv   8P GAIN CNV 8P GAIN WILD-TYPE
  M0           7                58
  MX           1                 5
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  8P GAIN CNV       16  8  0   1  10   5  2  6
  8P GAIN WILD-TYPE 92 30  7   1  48  29  3 57
D15V8, multiclass
D15V9, continuous
D15V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8P GAIN CNV             1        5         9        25         2
  8P GAIN WILD-TYPE      20       46        39       127         4
D15V11, multiclass

Clustering(16) Variable = 8q gain
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN CNV        87  45
  8Q GAIN WILD-TYPE 113  76
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              132               189 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               45                76 
$`8Q GAIN CNV`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        9.30        37.28         8.15         6.12         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         2.07        12.99         3.72         7.76 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
       95.05         9.04         4.60         4.37        18.31        13.87 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4728 
       22.59        37.87        14.33        20.52        13.55        10.68 
TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
        5.13        12.59         7.89        11.44        26.63         9.17 
TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5373 TCGA-CN-6013 
        9.50         8.28        16.21        11.84        13.58         5.06 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5329 
        7.36         1.38         3.91         3.68         3.75        27.65 
TCGA-CQ-5330 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-7065 
       29.46         4.21        28.60        32.35        14.96        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       22.78        84.23        11.77        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6482 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       36.99        11.34        12.46        39.12        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7401 TCGA-CV-5430 
        3.42        34.06        47.01        12.89        35.41       135.29 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
      129.21        47.28        19.20        89.82        76.47        64.73 
TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6934 
       17.06        48.59        33.11        40.96        13.32         2.14 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6948 
        5.46        20.52        11.24       126.08        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7095 
       15.06        30.05         6.08         4.14       126.12        18.81 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7245 
        1.84        12.89        71.21        56.68        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7407 
       18.97        17.10        11.87        47.97         2.10        35.54 
TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 
       17.82         0.46        25.02         0.07       100.54       156.49 
TCGA-CV-7428 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7086 TCGA-CX-7219 
       54.90         7.13        16.60         6.38         7.76        27.22 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 
       10.68         8.22         7.82         3.45         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-8501 
       34.78        14.04        18.90         9.83         1.15         1.87 
TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 TCGA-MT-A51X 
        1.02         1.45         0.99         0.99         5.26         1.12 

$`8Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64         9.07         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-6869 TCGA-BA-6870 TCGA-BB-4217 TCGA-BB-7861 TCGA-BB-7862 
        5.88         8.02        14.79         6.12        10.19        17.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       20.98        14.04        71.05         6.31        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
        6.38        11.28        17.16        12.13        12.99        14.33 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 
       28.77        13.05         5.69        12.39        28.47        11.54 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        4.70         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
        9.07         6.61         6.18         5.82         2.73         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       33.80        10.42        11.21        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 
       13.25         4.21        26.76        48.03        45.27        16.70 
TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6472 TCGA-CR-6474 
       29.59        54.64        37.87        26.24        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7371 
       11.51        15.75         9.27        47.18        40.90         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7380 TCGA-CR-7382 
       24.95        29.23         0.99        31.96        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5441 
       29.92        48.36        17.16       108.33        17.95        87.55 
TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 
       84.39        13.35        17.75        57.07         7.07        43.23 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 
       24.43         5.88        90.08         9.70         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       26.43        19.79        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 
        8.38        28.31         2.50        64.80       111.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7180 
        7.99         9.01         5.23        52.31        21.76        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 
      114.94         4.73        47.47        36.00        95.34         4.96 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        57.47       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7429 
       22.85        25.94        34.09        14.86        56.48         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 
       16.27        84.49        19.73       142.49        21.99        10.39 
TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.55        13.25         2.53         5.00         5.03         4.18 
TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 
        4.18        16.96        15.68        18.02        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.13        12.10        10.65         0.46         0.43         0.99 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HL-7533 
        4.34         0.07         0.16         0.82         1.81        22.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        4.01         3.72         0.46 

      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             0.07              0.07 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
           156.49            210.94 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
           13.955            13.640 
[1] "0.1 - 156.5 (14.0)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
      "8Q GAIN CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
      "8Q GAIN CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "8Q GAIN CNV"       "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-MT-A51X 
      "8Q GAIN CNV" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         36   98
  8Q GAIN WILD-TYPE   55  136
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  FEMALE          36                55
  MALE            98               136
D16V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         31  103
  8Q GAIN WILD-TYPE   47  144
     clus
vv    8Q GAIN CNV 8Q GAIN WILD-TYPE
  NO           31                47
  YES         103               144
D16V5, continuous
D16V6, continuous
D16V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         21    4
  8Q GAIN WILD-TYPE   44    2
    clus
vv   8Q GAIN CNV 8Q GAIN WILD-TYPE
  M0          21                44
  MX           4                 2
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  8Q GAIN CNV       38 17  5   1  28  13  3 26
  8Q GAIN WILD-TYPE 70 21  2   1  30  21  2 37
D16V8, multiclass
D16V9, continuous
D16V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8Q GAIN CNV             6       20        19        69         3
  8Q GAIN WILD-TYPE      15       31        29        83         3
D16V11, multiclass

Clustering(17) Variable = 9p gain
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN CNV        26  13
  9P GAIN WILD-TYPE 174 108
      9P GAIN CNV 9P GAIN WILD-TYPE 
               39               282 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               13               108 
$`9P GAIN CNV`
TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-7870 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5370 
        5.88        57.44        37.87         9.17         8.28         8.52 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6996 TCGA-CQ-5329 TCGA-CQ-7063 
        6.81         7.50         6.18         3.75        27.65        48.03 
TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-7373 TCGA-CR-7395 TCGA-CV-5440 
       22.78        58.42         7.66        29.23        30.54        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 
       87.55        76.47        17.06        33.11        13.32        24.43 
TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7099 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7407 
        6.08         4.14         7.99        18.97        47.97        35.54 
TCGA-CV-7409 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-D6-6516 TCGA-DQ-5625 
       17.82        56.48       156.49         3.48        10.68        34.78 
TCGA-H7-7774 TCGA-HL-7533 TCGA-MT-A51W 
        0.99        22.75         0.46 

$`9P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         6.12         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       11.44        26.63        28.77        13.05         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       12.49        13.58         9.01         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
        4.21        14.96        26.76        45.27        33.07        16.70 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 
        6.02        11.90        10.22        11.34        11.64        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 
       40.90        35.84         3.42         3.06        24.95         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 
       47.28        19.20        17.95        84.39        64.73        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 
       12.03        42.35        15.06        30.05        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
      126.12       111.12        18.81        12.66         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       26.20        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        57.47       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      100.54        14.86        54.90        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68        37.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-8501 TCGA-H7-8502 
       10.65         1.15         0.46         0.43         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51X 
        0.99         0.99         5.26         4.01         3.72         1.12 

      9P GAIN CNV 9P GAIN WILD-TYPE 
             0.46              0.07 
      9P GAIN CNV 9P GAIN WILD-TYPE 
           156.49            210.94 
      9P GAIN CNV 9P GAIN WILD-TYPE 
           18.970            13.565 
[1] "0.5 - 156.5 (19.0)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "9P GAIN CNV"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-MT-A51X 
"9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "9P GAIN CNV"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-MT-A51X 
"9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "9P GAIN CNV"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P GAIN WILD-TYPE"       "9P GAIN CNV"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-MT-A51X 
"9P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV         16   23
  9P GAIN WILD-TYPE   75  211
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  FEMALE          16                75
  MALE            23               211
D17V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          7   32
  9P GAIN WILD-TYPE   71  215
     clus
vv    9P GAIN CNV 9P GAIN WILD-TYPE
  NO            7                71
  YES          32               215
D17V5, continuous
D17V6, continuous
D17V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          9    0
  9P GAIN WILD-TYPE   56    6
    clus
vv   9P GAIN CNV 9P GAIN WILD-TYPE
  M0           9                56
  MX           0                 6
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  9P GAIN CNV       14  4  0   0   7   2  2  9
  9P GAIN WILD-TYPE 94 34  7   2  51  32  3 54
D17V8, multiclass
D17V9, continuous
D17V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9P GAIN CNV             4        9         4        17         2
  9P GAIN WILD-TYPE      17       42        44       135         4
D17V11, multiclass

Clustering(18) Variable = 9q gain
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN CNV        32  17
  9Q GAIN WILD-TYPE 168 104
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               49               272 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               17               104 
$`9Q GAIN CNV`
TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4727 
        8.15         5.88        57.44        22.59        37.87         6.38 
TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 
       28.77         9.17        11.57         6.81         7.50         6.18 
TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-7368 
        3.75        48.16        48.03        22.78        58.42        40.90 
TCGA-CR-7373 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 
       29.23        17.95        89.82        76.47        17.06        33.11 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 
       13.32        24.43         6.08         4.14        64.80         7.99 
TCGA-CV-7100 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7407 TCGA-CV-7409 
        9.01        56.68        26.20        18.97        35.54        17.82 
TCGA-CV-7415 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7434 
       22.85        56.48       156.49         3.48        16.27         7.13 
TCGA-D6-6516 TCGA-D6-8569 TCGA-DQ-5625 TCGA-H7-7774 TCGA-H7-8502 TCGA-HD-8314 
       10.68         4.18        34.78         0.99         4.34         1.45 
TCGA-MT-A51W 
        0.46 

$`9Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78        57.90         6.12         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       10.19        17.59        13.87        20.98        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 
       12.99         7.89        14.33        11.44        26.63        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.84        12.49         8.52        13.58         9.01 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07         6.61         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        2.73         3.91         3.68         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       45.27        33.07        16.70        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       87.55        84.39        64.73        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 
       48.59         7.07        43.23        40.96         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        8.38        28.31         2.50       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       12.66         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       31.33        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        18.41        57.47       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 
      100.54        14.86        54.90        84.49        19.73       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 
        5.03         4.18         3.45         3.68        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.43         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.81         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51X 
        3.72         1.12 

      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             0.46              0.07 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
           156.49            210.94 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
           17.820            13.565 
[1] "0.5 - 156.5 (17.8)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-MT-A51X 
"9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-MT-A51X 
"9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
      "9Q GAIN CNV"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-MT-A51X 
"9Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV         15   35
  9Q GAIN WILD-TYPE   76  199
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  FEMALE          15                76
  MALE            35               199
D18V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV         12   38
  9Q GAIN WILD-TYPE   66  209
     clus
vv    9Q GAIN CNV 9Q GAIN WILD-TYPE
  NO           12                66
  YES          38               209
D18V5, continuous
D18V6, continuous
D18V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          9    1
  9Q GAIN WILD-TYPE   56    5
    clus
vv   9Q GAIN CNV 9Q GAIN WILD-TYPE
  M0           9                56
  MX           1                 5
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  9Q GAIN CNV       19  7  0   0   9   6  1  8
  9Q GAIN WILD-TYPE 89 31  7   2  49  28  4 55
D18V8, multiclass
D18V9, continuous
D18V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9Q GAIN CNV             4        8         5        30         1
  9Q GAIN WILD-TYPE      17       43        43       122         5
D18V11, multiclass

Clustering(19) Variable = 10p gain
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN CNV         9   3
  10P GAIN WILD-TYPE 191 118
      10P GAIN CNV 10P GAIN WILD-TYPE 
                12                309 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                 3                118 
$`10P GAIN CNV`
TCGA-BA-5151 TCGA-BA-6869 TCGA-CN-4727 TCGA-CN-5356 TCGA-CN-6013 TCGA-CR-5247 
        6.25         8.02         6.38         9.50         5.06        11.77 
TCGA-CR-6488 TCGA-CR-7399 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7421 TCGA-F7-7848 
       12.46         5.92        95.34        47.97         0.07         1.15 

$`10P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       11.44        26.63        28.77        13.05         9.17         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        29.59        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64         7.66        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       31.33        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       12.10        10.65         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      10P GAIN CNV 10P GAIN WILD-TYPE 
              0.07               0.07 
      10P GAIN CNV 10P GAIN WILD-TYPE 
             95.34             210.94 
      10P GAIN CNV 10P GAIN WILD-TYPE 
              7.20              14.33 
[1] "0.1 - 95.3 (7.2)"   "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
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        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
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        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
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        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
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        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
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      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
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        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
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        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
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        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
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        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
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        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
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"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          2   10
  10P GAIN WILD-TYPE   89  224
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  FEMALE            2                 89
  MALE             10                224
D19V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          4    8
  10P GAIN WILD-TYPE   74  239
     clus
vv    10P GAIN CNV 10P GAIN WILD-TYPE
  NO             4                 74
  YES            8                239
D19V5, continuous
D19V6, continuous
D19V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          1    0
  10P GAIN WILD-TYPE   64    6
    clus
vv   10P GAIN CNV 10P GAIN WILD-TYPE
  M0            1                 64
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  10P GAIN CNV         7   1   0   0   1   1   0   2
  10P GAIN WILD-TYPE 101  37   7   2  57  33   5  61
D19V8, multiclass
D19V9, continuous
D19V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10P GAIN CNV             0        2         2         7         0
  10P GAIN WILD-TYPE      21       49        46       145         6
D19V11, multiclass

Clustering(20) Variable = 10q gain
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN CNV         4   2
  10Q GAIN WILD-TYPE 196 119
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 6                315 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 2                119 
$`10Q GAIN CNV`
TCGA-BA-5151 TCGA-BA-6872 TCGA-CN-4727 TCGA-CN-6013 TCGA-CR-7399 TCGA-CV-6441 
        6.25        12.99         6.38         5.06         5.92         5.88 

$`10Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         5.00         8.02        14.79         2.07         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      10Q GAIN CNV 10Q GAIN WILD-TYPE 
              5.06               0.07 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
             12.99             210.94 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
             6.085             14.330 
[1] "5.1 - 13.0 (6.1)"   "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
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        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
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        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
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        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
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        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
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        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
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        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"       "10Q GAIN CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "10Q GAIN CNV" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          1    5
  10Q GAIN WILD-TYPE   90  229
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  FEMALE            1                 90
  MALE              5                229
D20V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          4    2
  10Q GAIN WILD-TYPE   74  245
     clus
vv    10Q GAIN CNV 10Q GAIN WILD-TYPE
  NO             4                 74
  YES            2                245
D20V5, continuous
D20V6, continuous
D20V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          1    0
  10Q GAIN WILD-TYPE   64    6
    clus
vv   10Q GAIN CNV 10Q GAIN WILD-TYPE
  M0            1                 64
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  10Q GAIN CNV         3   0   0   0   1   1   0   1
  10Q GAIN WILD-TYPE 105  38   7   2  57  33   5  62
D20V8, multiclass
D20V9, continuous
D20V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10Q GAIN CNV             0        0         1         4         0
  10Q GAIN WILD-TYPE      21       51        47       148         6
D20V11, multiclass

Clustering(21) Variable = 11p gain
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN CNV        12   4
  11P GAIN WILD-TYPE 188 117
      11P GAIN CNV 11P GAIN WILD-TYPE 
                16                305 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 4                117 
$`11P GAIN CNV`
TCGA-BB-4225 TCGA-CN-4737 TCGA-CN-5367 TCGA-CQ-5334 TCGA-CQ-7065 TCGA-CR-7370 
        4.60         7.89        11.57         4.21        33.07         3.42 
TCGA-CR-7382 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-7254 TCGA-CV-7409 
       26.17        89.82        40.96        13.32        47.97        17.82 
TCGA-D6-6516 TCGA-D6-6827 TCGA-HD-7229 TCGA-IQ-7630 
       10.68         4.18         0.07         5.26 

$`11P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.84        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        57.47        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         4.34         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         4.01         3.72         0.46         1.12 

      11P GAIN CNV 11P GAIN WILD-TYPE 
              0.07               0.07 
      11P GAIN CNV 11P GAIN WILD-TYPE 
             89.82             210.94 
      11P GAIN CNV 11P GAIN WILD-TYPE 
            11.125             14.040 
[1] "0.1 - 89.8 (11.1)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "11P GAIN CNV"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"       "11P GAIN CNV" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          4   12
  11P GAIN WILD-TYPE   87  222
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  FEMALE            4                 87
  MALE             12                222
D21V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          5   11
  11P GAIN WILD-TYPE   73  236
     clus
vv    11P GAIN CNV 11P GAIN WILD-TYPE
  NO             5                 73
  YES           11                236
D21V5, continuous
D21V6, continuous
D21V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          3    0
  11P GAIN WILD-TYPE   62    6
    clus
vv   11P GAIN CNV 11P GAIN WILD-TYPE
  M0            3                 62
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  11P GAIN CNV         6   1   0   0   4   1   1   3
  11P GAIN WILD-TYPE 102  37   7   2  54  33   4  60
D21V8, multiclass
D21V9, continuous
D21V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11P GAIN CNV             2        4         1         6         1
  11P GAIN WILD-TYPE      19       47        47       146         5
D21V11, multiclass

Clustering(22) Variable = 11q gain
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN CNV        11   5
  11Q GAIN WILD-TYPE 189 116
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                16                305 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 5                116 
$`11Q GAIN CNV`
TCGA-BA-5558 TCGA-BB-4225 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-5367 TCGA-CQ-5334 
       53.75         4.60        12.59         7.89        11.57         4.21 
TCGA-CQ-7065 TCGA-CR-7370 TCGA-CV-6003 TCGA-CV-6960 TCGA-CV-7416 TCGA-D6-6516 
       33.07         3.42        40.96        28.31        25.02        10.68 
TCGA-D6-6827 TCGA-DQ-5631 TCGA-HD-7229 TCGA-IQ-7630 
        4.18        18.02         0.07         5.26 

$`11Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       11.28        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42        11.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 
       14.96        26.76        48.03        45.27        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       43.23        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        27.22        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.00         5.03         3.45         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        16.96        15.68        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 
        0.46         0.43         0.99         1.87         4.34         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         4.01         3.72         0.46         1.12 

      11Q GAIN CNV 11Q GAIN WILD-TYPE 
              0.07               0.07 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
             53.75             210.94 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
            11.125             14.040 
[1] "0.1 - 53.8 (11.1)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          6   10
  11Q GAIN WILD-TYPE   85  224
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  FEMALE            6                 85
  MALE             10                224
D22V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          4   12
  11Q GAIN WILD-TYPE   74  235
     clus
vv    11Q GAIN CNV 11Q GAIN WILD-TYPE
  NO             4                 74
  YES           12                235
D22V5, continuous
D22V6, continuous
D22V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          2    0
  11Q GAIN WILD-TYPE   63    6
    clus
vv   11Q GAIN CNV 11Q GAIN WILD-TYPE
  M0            2                 63
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  11Q GAIN CNV         6   1   0   0   3   1   0   4
  11Q GAIN WILD-TYPE 102  37   7   2  55  33   5  59
D22V8, multiclass
D22V9, continuous
D22V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11Q GAIN CNV             2        2         2         6         0
  11Q GAIN WILD-TYPE      19       49        46       146         6
D22V11, multiclass

Clustering(23) Variable = 12p gain
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN CNV        40  21
  12P GAIN WILD-TYPE 160 100
      12P GAIN CNV 12P GAIN WILD-TYPE 
                61                260 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                21                100 
$`12P GAIN CNV`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4725 
       57.44        95.05         9.04         4.60        17.59        10.19 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-5359 TCGA-CN-6023 TCGA-CN-6024 
        5.13         7.89        14.33        12.39         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CR-5243 TCGA-CR-5247 
        1.38         3.91        27.65        10.42        84.23        11.77 
TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7390 TCGA-CR-7398 
       58.42         7.66        12.46        47.18        29.82         5.13 
TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
        5.92       135.29        17.16       129.21       108.33        89.82 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6945 
        7.07        40.96        90.08        20.52        11.24        12.03 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7245 
        4.14       111.12         1.84        52.31        21.76        26.20 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7418 
       18.97        47.97        36.13        35.54        17.82        25.94 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 
      142.49        16.60        21.99         7.76        10.68        16.96 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 
       11.84         9.83         1.15         0.99         1.87         0.82 
TCGA-MT-A51X 
        1.12 

$`12P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        3.72         7.76         6.12         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       71.05        20.52         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6992 
        4.41         3.19         9.07         6.61         5.82         2.73 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 
       21.50         2.93        38.89        29.46        33.80        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 
       33.07        16.70        22.78        29.59        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10        35.41        29.92        48.36 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
       33.11        43.23        13.32        24.43         5.88         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        9.70         5.46         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
        5.23        12.89        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        31.33        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 
        4.96        11.87         2.10        18.41        57.47       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 
        3.48        16.27        84.49        19.73         7.13         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 
       18.90        21.73        12.13        12.10        10.65         0.46 
TCGA-F7-8489 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 
        0.43         4.34         0.07         0.16         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W 
        3.72         0.46 

      12P GAIN CNV 12P GAIN WILD-TYPE 
              0.82               0.07 
      12P GAIN CNV 12P GAIN WILD-TYPE 
            142.49             210.94 
      12P GAIN CNV 12P GAIN WILD-TYPE 
            14.330             13.755 
[1] "0.8 - 142.5 (14.3)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12P GAIN WILD-TYPE"       "12P GAIN CNV"       "12P GAIN CNV" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
[1] "hr=" "1.3"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         11   51
  12P GAIN WILD-TYPE   80  183
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  FEMALE           11                 80
  MALE             51                183
D23V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         13   49
  12P GAIN WILD-TYPE   65  198
     clus
vv    12P GAIN CNV 12P GAIN WILD-TYPE
  NO            13                 65
  YES           49                198
D23V5, continuous
D23V6, continuous
D23V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         10    1
  12P GAIN WILD-TYPE   55    5
    clus
vv   12P GAIN CNV 12P GAIN WILD-TYPE
  M0           10                 55
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  12P GAIN CNV       19  7  3   1  12   5  2 13
  12P GAIN WILD-TYPE 89 31  4   1  46  29  3 50
D23V8, multiclass
D23V9, continuous
D23V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12P GAIN CNV             3       10        10        30         2
  12P GAIN WILD-TYPE      18       41        38       122         4
D23V11, multiclass

Clustering(24) Variable = 12q gain
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN CNV        17   7
  12Q GAIN WILD-TYPE 183 114
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                24                297 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                 7                114 
$`12Q GAIN CNV`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4725 TCGA-CN-4727 
       57.44         2.07        95.05         4.60        10.19         6.38 
TCGA-CN-4737 TCGA-CN-6023 TCGA-CQ-5332 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7399 
        7.89         6.18        10.42        11.77        58.42         5.92 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-6941 TCGA-CV-6962 TCGA-CV-7091 
      135.29        17.16       108.33        11.24         4.14       111.12 
TCGA-CV-7102 TCGA-CV-7245 TCGA-CV-7440 TCGA-D6-6516 TCGA-DQ-7591 TCGA-H7-7774 
        1.84        26.20        21.99        10.68        11.84         0.99 

$`12Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.76         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.33        71.05        20.52         6.31        13.55         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       48.36       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        21.73         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-8501 
       12.10        10.65         1.15         0.46         0.43         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      12Q GAIN CNV 12Q GAIN WILD-TYPE 
              0.99               0.07 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
            135.29             210.94 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
             10.96              14.33 
[1] "1.0 - 135.3 (11.0)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
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        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          3   21
  12Q GAIN WILD-TYPE   88  213
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  FEMALE            3                 88
  MALE             21                213
D24V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          9   15
  12Q GAIN WILD-TYPE   69  232
     clus
vv    12Q GAIN CNV 12Q GAIN WILD-TYPE
  NO             9                 69
  YES           15                232
D24V5, continuous
D24V6, continuous
D24V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          3    0
  12Q GAIN WILD-TYPE   62    6
    clus
vv   12Q GAIN CNV 12Q GAIN WILD-TYPE
  M0            3                 62
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  12Q GAIN CNV         8   1   1   1   3   3   0   7
  12Q GAIN WILD-TYPE 100  37   6   1  55  31   5  56
D24V8, multiclass
D24V9, continuous
D24V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12Q GAIN CNV             2        2         3        12         0
  12Q GAIN WILD-TYPE      19       49        45       140         6
D24V11, multiclass

Clustering(25) Variable = 13q gain
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN CNV        11   7
  13Q GAIN WILD-TYPE 189 114
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                18                303 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 7                114 
$`13Q GAIN CNV`
TCGA-BA-4075 TCGA-BB-4225 TCGA-CN-4729 TCGA-CN-6013 TCGA-CR-6488 TCGA-CR-7367 
        9.30         4.60         5.13         5.06        12.46        47.34 
TCGA-CR-7390 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-7095 TCGA-CV-7178 
       29.82        89.82        40.96        90.08        18.81        71.21 
TCGA-CV-7243 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7437 TCGA-DQ-5629 TCGA-MT-A51X 
       31.33         0.46        25.02        16.60        16.96         1.12 

$`13Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       13.55        10.19         4.67         6.38        10.68        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64         7.66        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        39.12        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        13.32        24.43         5.88         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73         7.13       142.49         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         3.68        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        4.01         3.72         0.46 

      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              0.46               0.07 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
             90.08             210.94 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
            17.885             13.580 
[1] "0.5 - 90.1 (17.9)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"       "13Q GAIN CNV" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          5   13
  13Q GAIN WILD-TYPE   86  221
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  FEMALE            5                 86
  MALE             13                221
D25V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          4   14
  13Q GAIN WILD-TYPE   74  233
     clus
vv    13Q GAIN CNV 13Q GAIN WILD-TYPE
  NO             4                 74
  YES           14                233
D25V5, continuous
D25V6, continuous
D25V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          4    0
  13Q GAIN WILD-TYPE   61    6
    clus
vv   13Q GAIN CNV 13Q GAIN WILD-TYPE
  M0            4                 61
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  13Q GAIN CNV         3   5   1   0   4   0   0   4
  13Q GAIN WILD-TYPE 105  33   6   2  54  34   5  59
D25V8, multiclass
D25V9, continuous
D25V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  13Q GAIN CNV             0        3         5         8         0
  13Q GAIN WILD-TYPE      21       48        43       144         6
D25V11, multiclass

Clustering(26) Variable = 14q gain
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN CNV        31  23
  14Q GAIN WILD-TYPE 169  98
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                54                267 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                23                 98 
$`14Q GAIN CNV`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-8601 TCGA-CN-4723 
        9.30         6.12        12.99         3.72        20.52        13.55 
TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6021 TCGA-CQ-5329 TCGA-CQ-5334 
        8.28        11.84        11.57         9.07        27.65         4.21 
TCGA-CQ-6220 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-7367 TCGA-CR-7370 
       32.35        16.90        12.46        11.51        47.34         3.42 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7390 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
       19.92        17.13        29.82       129.21       108.33        89.82 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6942 
       57.07        33.11        40.96         2.14        26.43       126.08 
TCGA-CV-6950 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7243 
       15.06       126.12        18.81         5.23        71.21        31.33 
TCGA-CV-7245 TCGA-CV-7409 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7434 
       26.20        17.82         9.67        22.85        25.02         7.13 
TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-A4Z9 
       16.60         7.76        10.68         7.82         5.00         3.68 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7593 TCGA-HD-7753 TCGA-MT-A51X 
       34.78        16.96        18.90        12.13         0.16         1.12 

$`14Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 
        5.00         8.02        14.79         2.07         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33        71.05         6.31        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       16.21        11.54        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        1.48         4.41         3.19         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 
       38.89        29.46        33.80        10.42        11.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       26.17        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       64.73        17.06        13.35        17.75        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
       43.23        13.32        24.43         5.88        90.08         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        5.46        20.52         4.70        21.86        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       12.03        42.35        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.80       111.12        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7418 
       57.47        35.54       210.94        89.33         0.46        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 
       54.90         3.48        16.27        84.49        19.73       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        8.22         2.53         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       37.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
        9.83        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         4.34         0.07         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        4.01         3.72         0.46 

      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              0.16               0.07 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
            129.21             210.94 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
             16.75              13.58 
[1] "0.2 - 129.2 (16.8)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
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        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "14Q GAIN CNV"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV"       "14Q GAIN CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
[1] "hr=" "1.1"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV         17   37
  14Q GAIN WILD-TYPE   74  197
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  FEMALE           17                 74
  MALE             37                197
D26V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          9   45
  14Q GAIN WILD-TYPE   69  202
     clus
vv    14Q GAIN CNV 14Q GAIN WILD-TYPE
  NO             9                 69
  YES           45                202
D26V5, continuous
D26V6, continuous
D26V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          9    1
  14Q GAIN WILD-TYPE   56    5
    clus
vv   14Q GAIN CNV 14Q GAIN WILD-TYPE
  M0            9                 56
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  14Q GAIN CNV       15  8  2   0   9   4  2 12
  14Q GAIN WILD-TYPE 93 30  5   2  49  30  3 51
D26V8, multiclass
D26V9, continuous
D26V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  14Q GAIN CNV             4        9        10        20         3
  14Q GAIN WILD-TYPE      17       42        38       132         3
D26V11, multiclass

Clustering(27) Variable = 15q gain
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN CNV         8   4
  15Q GAIN WILD-TYPE 192 117
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                12                309 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 4                117 
$`15Q GAIN CNV`
TCGA-BA-6871 TCGA-BB-7861 TCGA-CN-4729 TCGA-CN-4737 TCGA-CR-6477 TCGA-CR-6484 
        2.07        10.19         5.13         7.89        16.90        11.64 
TCGA-CV-7178 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-D6-6516 TCGA-DQ-7589 
       71.21         9.67        22.85        25.94        10.68        18.90 

$`15Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
       13.55        10.19         4.67         6.38        10.68        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        18.51         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 
       57.47        35.54        17.82       210.94        89.33         0.46 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      15Q GAIN CNV 15Q GAIN WILD-TYPE 
              2.07               0.07 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             71.21             210.94 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             11.16              14.04 
[1] "2.1 - 71.2 (11.2)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          4    8
  15Q GAIN WILD-TYPE   87  226
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  FEMALE            4                 87
  MALE              8                226
D27V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          1   11
  15Q GAIN WILD-TYPE   77  236
     clus
vv    15Q GAIN CNV 15Q GAIN WILD-TYPE
  NO             1                 77
  YES           11                236
D27V5, continuous
D27V6, continuous
D27V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          1    0
  15Q GAIN WILD-TYPE   64    6
    clus
vv   15Q GAIN CNV 15Q GAIN WILD-TYPE
  M0            1                 64
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  15Q GAIN CNV         2   2   2   0   2   1   0   2
  15Q GAIN WILD-TYPE 106  36   5   2  56  33   5  61
D27V8, multiclass
D27V9, continuous
D27V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  15Q GAIN CNV             1        1         2         5         0
  15Q GAIN WILD-TYPE      20       50        46       147         6
D27V11, multiclass

Clustering(28) Variable = 16p gain
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN CNV        15   7
  16P GAIN WILD-TYPE 185 114
      16P GAIN CNV 16P GAIN WILD-TYPE 
                22                299 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                 7                114 
$`16P GAIN CNV`
TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6869 TCGA-CN-4737 TCGA-CN-6013 TCGA-CQ-5329 
        9.30         5.00         8.02         7.89         5.06        27.65 
TCGA-CR-7390 TCGA-CR-7402 TCGA-CV-5978 TCGA-CV-6941 TCGA-CV-7091 TCGA-CV-7243 
       29.82        29.92         7.07        11.24       111.12        31.33 
TCGA-CV-7245 TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7423 TCGA-CV-7433 TCGA-CX-7086 
       26.20         2.10        17.82       100.54        19.73         7.76 
TCGA-D6-6516 TCGA-D6-8569 TCGA-DQ-5625 TCGA-IQ-7631 
       10.68         4.18        34.78         4.01 

$`16P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13         5.92        35.41        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 
       13.35        17.75        57.07        48.59        33.11        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87        47.97        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94         0.07        34.09        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 
      156.49        54.90         3.48        16.27        84.49         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5629 
        5.03         4.18         3.45         3.68        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         3.72         0.46         1.12 

      16P GAIN CNV 16P GAIN WILD-TYPE 
              2.10               0.07 
      16P GAIN CNV 16P GAIN WILD-TYPE 
            111.12             210.94 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             10.96              14.04 
[1] "2.1 - 111.1 (11.0)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
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      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          5   17
  16P GAIN WILD-TYPE   86  217
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  FEMALE            5                 86
  MALE             17                217
D28V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          4   18
  16P GAIN WILD-TYPE   74  229
     clus
vv    16P GAIN CNV 16P GAIN WILD-TYPE
  NO             4                 74
  YES           18                229
D28V5, continuous
D28V6, continuous
D28V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          3    0
  16P GAIN WILD-TYPE   62    6
    clus
vv   16P GAIN CNV 16P GAIN WILD-TYPE
  M0            3                 62
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  16P GAIN CNV       11  2  0   0   3   0  2  4
  16P GAIN WILD-TYPE 97 36  7   2  55  34  3 59
D28V8, multiclass
D28V9, continuous
D28V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16P GAIN CNV             2        4         5         6         2
  16P GAIN WILD-TYPE      19       47        43       146         4
D28V11, multiclass

Clustering(29) Variable = 16q gain
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN CNV        17  12
  16Q GAIN WILD-TYPE 183 109
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                29                292 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                12                109 
$`16Q GAIN CNV`
TCGA-BA-4075 TCGA-BA-6868 TCGA-CN-4737 TCGA-CN-6013 TCGA-CN-6989 TCGA-CQ-5329 
        9.30         5.00         7.89         5.06         5.82        27.65 
TCGA-CR-7390 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-7091 TCGA-CV-7099 
       29.82        33.11         7.07        43.23       111.12         7.99 
TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7406 
        1.84        21.76        71.21        31.33        26.20        57.47 
TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7423 TCGA-CV-7433 TCGA-D6-6516 TCGA-D6-8568 
       17.82        22.85       100.54        19.73        10.68         3.45 
TCGA-D6-8569 TCGA-DQ-5631 TCGA-HD-8314 TCGA-IQ-7631 TCGA-MT-A51X 
        4.18        18.02         1.45         4.01         1.12 

$`16Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       11.28        12.59        17.16        12.13        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6003 
       17.06        13.35        17.75        57.07        48.59        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
       28.31         2.50         4.14        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 
       12.66         9.01         5.23        52.31        12.89        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
        0.46        25.02        25.94         0.07        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-A4Z9 TCGA-DQ-5624 
        2.53         5.00         5.03         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        16.96        15.68        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.02         1.81         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-MT-A51W 
       22.75         5.26         3.72         0.46 

      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              1.12               0.07 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
            111.12             210.94 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
            17.820             13.755 
[1] "1.1 - 111.1 (17.8)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "16Q GAIN CNV"       "16Q GAIN CNV"       "16Q GAIN CNV" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "16Q GAIN CNV"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "16Q GAIN CNV"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
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        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "16Q GAIN CNV"       "16Q GAIN CNV"       "16Q GAIN CNV" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "16Q GAIN CNV"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "16Q GAIN CNV"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          7   22
  16Q GAIN WILD-TYPE   84  212
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  FEMALE            7                 84
  MALE             22                212
D29V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          6   23
  16Q GAIN WILD-TYPE   72  224
     clus
vv    16Q GAIN CNV 16Q GAIN WILD-TYPE
  NO             6                 72
  YES           23                224
D29V5, continuous
D29V6, continuous
D29V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          5    0
  16Q GAIN WILD-TYPE   60    6
    clus
vv   16Q GAIN CNV 16Q GAIN WILD-TYPE
  M0            5                 60
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  16Q GAIN CNV       10  2  2   0   6   2  2  5
  16Q GAIN WILD-TYPE 98 36  5   2  52  32  3 58
D29V8, multiclass
D29V9, continuous
D29V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16Q GAIN CNV             2        8         3        12         2
  16Q GAIN WILD-TYPE      19       43        45       140         4
D29V11, multiclass

Clustering(30) Variable = 17p gain
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN CNV        10   8
  17P GAIN WILD-TYPE 190 113
      17P GAIN CNV 17P GAIN WILD-TYPE 
                18                303 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 8                113 
$`17P GAIN CNV`
TCGA-BA-4075 TCGA-BB-8601 TCGA-CN-6023 TCGA-CQ-5329 TCGA-CQ-6229 TCGA-CR-5247 
        9.30        20.52         6.18        27.65        26.76        11.77 
TCGA-CR-6467 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-6933 
       58.42       135.29       129.21        89.82        33.11        90.08 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7414 
       11.24        15.06        30.05         4.14        18.81         0.46 

$`17P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 
       20.98        37.87        14.04        14.33        71.05         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        38.89        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       13.25         4.21        14.96        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        29.59        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       17.16       108.33        47.28        19.20        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       42.35         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      17P GAIN CNV 17P GAIN WILD-TYPE 
              0.46               0.07 
      17P GAIN CNV 17P GAIN WILD-TYPE 
            135.29             210.94 
      17P GAIN CNV 17P GAIN WILD-TYPE 
             23.64              13.55 
[1] "0.5 - 135.3 (23.6)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          2   16
  17P GAIN WILD-TYPE   89  218
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  FEMALE            2                 89
  MALE             16                218
D30V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          4   14
  17P GAIN WILD-TYPE   74  233
     clus
vv    17P GAIN CNV 17P GAIN WILD-TYPE
  NO             4                 74
  YES           14                233
D30V5, continuous
D30V6, continuous
D30V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          3    1
  17P GAIN WILD-TYPE   62    5
    clus
vv   17P GAIN CNV 17P GAIN WILD-TYPE
  M0            3                 62
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  17P GAIN CNV         5   3   0   1   3   3   0   3
  17P GAIN WILD-TYPE 103  35   7   1  55  31   5  60
D30V8, multiclass
D30V9, continuous
D30V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17P GAIN CNV             0        3         6         8         0
  17P GAIN WILD-TYPE      21       48        42       144         6
D30V11, multiclass

Clustering(31) Variable = 17q gain
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN CNV        13   9
  17Q GAIN WILD-TYPE 187 112
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                22                299 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                 9                112 
$`17Q GAIN CNV`
TCGA-BB-8601 TCGA-CN-6023 TCGA-CN-6988 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6473 
       20.52         6.18         1.38        11.77        58.42        36.99 
TCGA-CR-7390 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-6933 
       29.82         5.92       135.29        89.82        33.11        90.08 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7102 
       11.24        15.06        30.05         6.08         4.14         1.84 
TCGA-CV-7250 TCGA-CV-7424 TCGA-D6-8569 TCGA-H7-8502 
       95.34        14.86         4.18         4.34 

$`17Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.61         7.36         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.13        35.41        29.92        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       42.35        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              1.38               0.07 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
            135.29             210.94 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
             14.96              13.64 
[1] "1.4 - 135.3 (15.0)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
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      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          3   19
  17Q GAIN WILD-TYPE   88  215
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  FEMALE            3                 88
  MALE             19                215
D31V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          4   18
  17Q GAIN WILD-TYPE   74  229
     clus
vv    17Q GAIN CNV 17Q GAIN WILD-TYPE
  NO             4                 74
  YES           18                229
D31V5, continuous
D31V6, continuous
D31V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          5    2
  17Q GAIN WILD-TYPE   60    4
    clus
vv   17Q GAIN CNV 17Q GAIN WILD-TYPE
  M0            5                 60
  MX            2                  4
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  17Q GAIN CNV         4   3   1   1   6   4   0   2
  17Q GAIN WILD-TYPE 104  35   6   1  52  30   5  61
D31V8, multiclass
D31V9, continuous
D31V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17Q GAIN CNV             0        1         4        15         0
  17Q GAIN WILD-TYPE      21       50        44       137         6
D31V11, multiclass

Clustering(32) Variable = 18p gain
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN CNV        29  24
  18P GAIN WILD-TYPE 171  97
      18P GAIN CNV 18P GAIN WILD-TYPE 
                53                268 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                24                 97 
$`18P GAIN CNV`
TCGA-BA-4076 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4223 
       13.64        57.44         8.02         2.07         3.72        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7870 TCGA-CN-4730 TCGA-CN-5366 
        9.04         4.60        18.31        37.87        11.28        11.84 
TCGA-CN-6012 TCGA-CN-6988 TCGA-CQ-5332 TCGA-CQ-6227 TCGA-CR-6467 TCGA-CR-6482 
        4.70         1.38        10.42         4.21        58.42        11.34 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7390 TCGA-CR-7402 
        9.27        47.18        39.12         3.42        29.82        29.92 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5977 
      129.21       108.33        17.95        87.55        57.07        33.11 
TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 
       13.32         5.88         9.70        11.24        12.03        15.06 
TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7243 TCGA-CV-7247 
       30.05         4.14         5.23         1.84        31.33        18.97 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 
       11.87         2.10        17.82         7.13        16.60        21.99 
TCGA-D6-8568 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7595 TCGA-H7-8502 
        3.45        18.02        21.73        10.65         4.34 

$`18P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 
        5.00        14.79        12.99         7.76         6.12         4.37 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        10.68         5.13        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 
       28.47         8.28        16.21        11.54        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         7.50         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         6.18         7.36         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35        13.25        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 
       11.64         7.66        12.46        11.51        15.75        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 
       48.36       135.29        17.16        47.28        19.20        89.82 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 
       48.59         7.07        43.23        40.96        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
      126.08        19.79        42.35         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        47.97        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       19.73       142.49         6.38        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.00         5.03         4.18         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       34.78        16.96        15.68        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
        9.83        12.13        12.10         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      18P GAIN CNV 18P GAIN WILD-TYPE 
              1.38               0.07 
      18P GAIN CNV 18P GAIN WILD-TYPE 
            129.21             210.94 
      18P GAIN CNV 18P GAIN WILD-TYPE 
            12.030             14.185 
[1] "1.4 - 129.2 (12.0)" "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
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        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV"       "18P GAIN CNV" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "18P GAIN CNV"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV          4   50
  18P GAIN WILD-TYPE   87  184
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  FEMALE            4                 87
  MALE             50                184
D32V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV         10   44
  18P GAIN WILD-TYPE   68  203
     clus
vv    18P GAIN CNV 18P GAIN WILD-TYPE
  NO            10                 68
  YES           44                203
D32V5, continuous
D32V6, continuous
D32V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV          6    1
  18P GAIN WILD-TYPE   59    5
    clus
vv   18P GAIN CNV 18P GAIN WILD-TYPE
  M0            6                 59
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  18P GAIN CNV       14  5  3   0  10   6  1 14
  18P GAIN WILD-TYPE 94 33  4   2  48  28  4 49
D32V8, multiclass
D32V9, continuous
D32V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18P GAIN CNV             0        5        11        27         1
  18P GAIN WILD-TYPE      21       46        37       125         5
D32V11, multiclass

Clustering(33) Variable = 18q gain
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN CNV        15   5
  18Q GAIN WILD-TYPE 185 116
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                20                301 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                 5                116 
$`18Q GAIN CNV`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7870 
       57.44         2.07        95.05         4.60        18.31        37.87 
TCGA-CN-6012 TCGA-CN-6024 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 
        4.70         7.36        58.42        11.34        47.34         3.42 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-6433 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-7103 
      129.21       108.33        13.32        15.06        30.05        52.31 
TCGA-CV-7406 TCGA-DQ-7590 
       57.47        21.73 

$`18Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7862 
        7.76         6.12         9.04         4.37        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        22.59        20.98        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         7.50         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         6.18         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       48.36       135.29        17.16        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       43.23        40.96        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 
       11.24       126.08        19.79        12.03        42.35         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 
       12.66         7.99         9.01         5.23         1.84        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.03         4.18         3.45         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      18Q GAIN CNV 18Q GAIN WILD-TYPE 
              2.07               0.07 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
            129.21             210.94 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
             25.89              13.55 
[1] "2.1 - 129.2 (25.9)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
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      "18Q GAIN CNV"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
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        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "18Q GAIN CNV"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          1   19
  18Q GAIN WILD-TYPE   90  215
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  FEMALE            1                 90
  MALE             19                215
D33V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          5   15
  18Q GAIN WILD-TYPE   73  232
     clus
vv    18Q GAIN CNV 18Q GAIN WILD-TYPE
  NO             5                 73
  YES           15                232
D33V5, continuous
D33V6, continuous
D33V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          3    0
  18Q GAIN WILD-TYPE   62    6
    clus
vv   18Q GAIN CNV 18Q GAIN WILD-TYPE
  M0            3                 62
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  18Q GAIN CNV         4   2   0   0   3   4   0   6
  18Q GAIN WILD-TYPE 104  36   7   2  55  30   5  57
D33V8, multiclass
D33V9, continuous
D33V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18Q GAIN CNV             0        2         3         9         0
  18Q GAIN WILD-TYPE      21       49        45       143         6
D33V11, multiclass

Clustering(34) Variable = 19p gain
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN CNV        11   1
  19P GAIN WILD-TYPE 189 120
      19P GAIN CNV 19P GAIN WILD-TYPE 
                12                309 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                 1                120 
$`19P GAIN CNV`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-6021 
       57.44        95.05         4.60        14.04        20.52         9.07 
TCGA-CN-6024 TCGA-CQ-5323 TCGA-CR-6467 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-7245 
        7.36        48.16        58.42        12.89        76.47        26.20 

$`19P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        3.72         7.76         6.12         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33        71.05         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.13        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        3.19         6.61         6.18         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        3.91         3.68         3.75         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      19P GAIN CNV 19P GAIN WILD-TYPE 
              4.60               0.07 
      19P GAIN CNV 19P GAIN WILD-TYPE 
             95.05             210.94 
      19P GAIN CNV 19P GAIN WILD-TYPE 
             23.36              13.58 
[1] "4.6 - 95.0 (23.4)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "6.7"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          3    9
  19P GAIN WILD-TYPE   88  225
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  FEMALE            3                 88
  MALE              9                225
D34V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          3    9
  19P GAIN WILD-TYPE   75  238
     clus
vv    19P GAIN CNV 19P GAIN WILD-TYPE
  NO             3                 75
  YES            9                238
D34V5, continuous
D34V6, continuous
D34V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          2    1
  19P GAIN WILD-TYPE   63    5
    clus
vv   19P GAIN CNV 19P GAIN WILD-TYPE
  M0            2                 63
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  19P GAIN CNV         2   2   0   0   2   2   0   4
  19P GAIN WILD-TYPE 106  36   7   2  56  32   5  59
D34V8, multiclass
D34V9, continuous
D34V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19P GAIN CNV             1        0         2         5         0
  19P GAIN WILD-TYPE      20       51        46       147         6
D34V11, multiclass

Clustering(35) Variable = 19q gain
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN CNV        13   8
  19Q GAIN WILD-TYPE 187 113
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                21                300 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                 8                113 
$`19Q GAIN CNV`
TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-6021 TCGA-CN-6024 
       57.90        57.44        95.05         4.60         9.07         7.36 
TCGA-CQ-5324 TCGA-CR-6467 TCGA-CR-7367 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-6937 
       39.68        58.42        47.34        12.89        76.47        20.52 
TCGA-CV-7243 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7435 
       31.33        11.87        57.47        35.54        17.82       142.49 
TCGA-CV-7437 TCGA-DQ-7592 TCGA-IQ-7631 
       16.60         9.83         4.01 

$`19Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.76         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
        4.41         3.19         6.61         6.18         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       48.16        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 
        4.96        47.97         2.10        36.13        18.41       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.03         4.18         3.45         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73        11.84        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        0.99        22.75         5.26         3.72         0.46         1.12 

      19Q GAIN CNV 19Q GAIN WILD-TYPE 
              4.01               0.07 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
            142.49             210.94 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             31.33              13.45 
[1] "4.0 - 142.5 (31.3)" "0.1 - 210.9 (13.4)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          5   16
  19Q GAIN WILD-TYPE   86  218
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  FEMALE            5                 86
  MALE             16                218
D35V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          5   16
  19Q GAIN WILD-TYPE   73  231
     clus
vv    19Q GAIN CNV 19Q GAIN WILD-TYPE
  NO             5                 73
  YES           16                231
D35V5, continuous
D35V6, continuous
D35V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          3    0
  19Q GAIN WILD-TYPE   62    6
    clus
vv   19Q GAIN CNV 19Q GAIN WILD-TYPE
  M0            3                 62
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  19Q GAIN CNV         5   3   0   0   3   1   1   8
  19Q GAIN WILD-TYPE 103  35   7   2  55  33   4  55
D35V8, multiclass
D35V9, continuous
D35V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19Q GAIN CNV             0        5         3         6         1
  19Q GAIN WILD-TYPE      21       46        45       146         5
D35V11, multiclass

Clustering(36) Variable = 20p gain
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN CNV        45  20
  20P GAIN WILD-TYPE 155 101
      20P GAIN CNV 20P GAIN WILD-TYPE 
                65                256 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                20                101 
$`20P GAIN CNV`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 
        9.07         8.15         5.00        12.99         7.76         9.04 
TCGA-BB-4225 TCGA-BB-7872 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 
        4.60        14.33        11.28        12.59         7.89        11.44 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 
       28.77        13.05        28.47         9.01         4.70         5.06 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5330 
        6.18         7.36         1.38         5.82        27.65        29.46 
TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7365 
       32.35        32.35        84.23        11.77        58.42        39.12 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5434 
       47.34         3.42        24.95         5.92       135.29       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 
       47.28        19.20        76.47        64.73        13.35        57.07 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 
       12.03        42.35        65.82         7.13         8.38         4.14 
TCGA-CV-7090 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7255 
      126.12        21.76        71.21        31.33        26.20         2.10 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 
       25.02       100.54        16.60        10.39         7.76        10.68 
TCGA-D6-6517 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-7591 TCGA-HD-8314 
        8.22         4.18        37.78        11.84         1.45 

$`20P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64        37.28         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79         2.07         3.72         6.12        95.05 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       20.98        37.87        14.04        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5355 
       17.16        12.13        12.99        14.33        26.63         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        9.50         5.69        12.39         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        13.58         6.81 
TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        7.50         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        9.07         6.61         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       38.89        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7373 
        9.27        47.18        40.90        35.84         3.06        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 
       35.41        29.92        48.36        17.16       129.21        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5976 
       89.82        87.55        84.39        17.06        17.75        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6960 
       15.06        30.05         6.08        53.92        10.98        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 
        9.01         5.23         1.84        52.31        12.89        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       17.10        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       10.55        27.22        13.25         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 
        5.03         4.18         3.45         3.68        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 
       15.68        18.02        14.04        18.90        21.73         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      20P GAIN CNV 20P GAIN WILD-TYPE 
              1.38               0.07 
      20P GAIN CNV 20P GAIN WILD-TYPE 
            135.29             210.94 
      20P GAIN CNV 20P GAIN WILD-TYPE 
            12.990             14.185 
[1] "1.4 - 135.3 (13.0)" "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         15   51
  20P GAIN WILD-TYPE   76  183
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  FEMALE           15                 76
  MALE             51                183
D36V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         25   41
  20P GAIN WILD-TYPE   53  206
     clus
vv    20P GAIN CNV 20P GAIN WILD-TYPE
  NO            25                 53
  YES           41                206
D36V5, continuous
D36V6, continuous
D36V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         14    0
  20P GAIN WILD-TYPE   51    6
    clus
vv   20P GAIN CNV 20P GAIN WILD-TYPE
  M0           14                 51
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  20P GAIN CNV       15 10  3   1  13   7  1 14
  20P GAIN WILD-TYPE 93 28  4   1  45  27  4 49
D36V8, multiclass
D36V9, continuous
D36V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20P GAIN CNV             3        6        11        36         1
  20P GAIN WILD-TYPE      18       45        37       116         5
D36V11, multiclass

Clustering(37) Variable = 20q gain
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN CNV        43  27
  20Q GAIN WILD-TYPE 157  94
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                70                251 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                27                 94 
$`20Q GAIN CNV`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-7269 
        9.30         9.07         8.15         5.00        12.99         7.76 
TCGA-BB-4225 TCGA-BB-7864 TCGA-BB-7872 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4731 
        4.60        22.59        14.33        10.19        11.28        12.59 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5374 TCGA-CN-6011 
        7.89        11.44        28.77        13.05         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        4.70         5.06         6.18         1.38         5.82         3.91 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5247 TCGA-CR-6467 
       27.65        29.46        32.35        32.35        11.77        58.42 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CV-5430 TCGA-CV-5432 
        9.27        39.12        47.34        24.95       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 
      108.33        47.28        19.20        76.47        64.73        57.07 
TCGA-CV-6003 TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 
       40.96         5.46        12.03        42.35        30.05        65.82 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 
        7.13         8.38        28.31         4.14       126.12        12.66 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7255 TCGA-CV-7409 
       21.76        71.21        31.33        26.20         2.10        17.82 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 
       25.02       100.54        16.60         7.76        10.68         7.82 
TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5631 TCGA-HD-8314 
        4.18        37.78        18.02         1.45 

$`20Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64        37.28         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
        6.12         5.88         7.96        53.75        57.44         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       14.79         2.07         3.72         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.37        18.31        10.19        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 TCGA-CN-4735 
        4.67         6.38        10.68         5.13        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       12.99        14.33        26.63         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 
       11.57        12.49         8.52        13.58         6.81         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        7.36         2.73         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 
       48.16        39.68        21.50         2.93        38.89        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5248 
       33.07        16.70        22.78        29.59        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.64         7.66        12.46        11.51        15.75        47.18 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42         3.06        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 
       35.41        29.92        48.36        17.16        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       87.55        84.39        17.06        13.35        17.75        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11         7.07        43.23        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6952 
       26.43        11.24       126.08        19.79        15.06         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       53.92        10.98         2.50        64.80       111.12        18.81 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        57.47        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 
       10.39        10.55        27.22        13.25         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5625 
        5.00         5.03         4.18         3.45         3.68        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       16.96        15.68        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        0.82         1.02         1.81         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      20Q GAIN CNV 20Q GAIN WILD-TYPE 
              1.38               0.07 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
            135.29             210.94 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
             13.69              13.87 
[1] "1.4 - 135.3 (13.7)" "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
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        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
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        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         14   56
  20Q GAIN WILD-TYPE   77  178
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  FEMALE           14                 77
  MALE             56                178
D37V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         26   44
  20Q GAIN WILD-TYPE   52  203
     clus
vv    20Q GAIN CNV 20Q GAIN WILD-TYPE
  NO            26                 52
  YES           44                203
D37V5, continuous
D37V6, continuous
D37V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         11    0
  20Q GAIN WILD-TYPE   54    6
    clus
vv   20Q GAIN CNV 20Q GAIN WILD-TYPE
  M0           11                 54
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  20Q GAIN CNV       19 11  3   1  11   8  2 13
  20Q GAIN WILD-TYPE 89 27  4   1  47  26  3 50
D37V8, multiclass
D37V9, continuous
D37V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20Q GAIN CNV             3        9        13        36         2
  20Q GAIN WILD-TYPE      18       42        35       116         4
D37V11, multiclass

Clustering(38) Variable = 21q gain
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN CNV         6   3
  21Q GAIN WILD-TYPE 194 118
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 9                312 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 3                118 
$`21Q GAIN CNV`
TCGA-BB-4225 TCGA-CN-4727 TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-7370 TCGA-CV-5432 
        4.60         6.38        58.42         6.02         3.42       129.21 
TCGA-CV-7414 TCGA-CV-7415 TCGA-HD-8314 
        0.46        22.85         1.45 

$`21Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 
       39.52        34.52        36.99        18.51        16.90        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       135.29        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        4.18         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8634 TCGA-HD-8635 
        0.16         0.82         1.02         1.81         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              0.46               0.07 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
            129.21             210.94 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              6.02              14.04 
[1] "0.5 - 129.2 (6.0)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
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        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          2    7
  21Q GAIN WILD-TYPE   89  227
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  FEMALE            2                 89
  MALE              7                227
D38V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          2    7
  21Q GAIN WILD-TYPE   76  240
     clus
vv    21Q GAIN CNV 21Q GAIN WILD-TYPE
  NO             2                 76
  YES            7                240
D38V5, continuous
D38V6, continuous
D38V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          1    0
  21Q GAIN WILD-TYPE   64    6
    clus
vv   21Q GAIN CNV 21Q GAIN WILD-TYPE
  M0            1                 64
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  21Q GAIN CNV         2   2   0   0   1   1   0   2
  21Q GAIN WILD-TYPE 106  36   7   2  57  33   5  61
D38V8, multiclass
D38V9, continuous
D38V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  21Q GAIN CNV             0        0         3         3         0
  21Q GAIN WILD-TYPE      21       51        45       149         6
D38V11, multiclass

Clustering(39) Variable = 22q gain
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN CNV        22  17
  22Q GAIN WILD-TYPE 178 104
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                39                282 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                17                104 
$`22Q GAIN CNV`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-7269 TCGA-BB-7870 
       15.16         9.07         6.12         7.96         7.76        37.87 
TCGA-BB-8601 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6024 TCGA-CN-6994 TCGA-CQ-5326 
       20.52         4.70         6.61         7.36         3.91         2.93 
TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CR-6471 TCGA-CR-6474 TCGA-CR-6482 TCGA-CR-7370 
       10.42        32.88        39.52        18.51        11.34         3.42 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5970 
       12.89        29.82         7.10        35.41       108.33        13.35 
TCGA-CV-5978 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7178 
        7.07        26.43        11.24       126.12         1.84        71.21 
TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7424 TCGA-CV-7437 TCGA-DQ-5625 
       26.20        47.97        35.54        14.86        16.60        34.78 
TCGA-DQ-5629 TCGA-DQ-7589 TCGA-MT-A51X 
       16.96        18.90         1.12 

$`22Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.90         5.88        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       14.79         2.07        12.99         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       13.87        22.59        20.98        14.04        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6017 
       13.58         9.01         6.81         7.50         5.06         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         2.73         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        48.16        39.68        21.50        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        11.21         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        34.52        36.99        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 
       30.02        31.10        29.85        29.52        30.54         5.13 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       21.86       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
        8.38        28.31         2.50         4.14        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87         2.10        36.13        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       25.02        25.94         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
        3.68        37.78        15.68        18.02        14.04        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 

      22Q GAIN CNV 22Q GAIN WILD-TYPE 
              1.12               0.07 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
            126.12             210.94 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
            14.860             13.755 
[1] "1.1 - 126.1 (14.9)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
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        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV"       "22Q GAIN CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          8   32
  22Q GAIN WILD-TYPE   83  202
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  FEMALE            8                 83
  MALE             32                202
D39V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV         11   29
  22Q GAIN WILD-TYPE   67  218
     clus
vv    22Q GAIN CNV 22Q GAIN WILD-TYPE
  NO            11                 67
  YES           29                218
D39V5, continuous
D39V6, continuous
D39V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          8    1
  22Q GAIN WILD-TYPE   57    5
    clus
vv   22Q GAIN CNV 22Q GAIN WILD-TYPE
  M0            8                 57
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  22Q GAIN CNV         7   6   3   0   6   5   1  10
  22Q GAIN WILD-TYPE 101  32   4   2  52  29   4  53
D39V8, multiclass
D39V9, continuous
D39V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  22Q GAIN CNV             1        4         6        20         1
  22Q GAIN WILD-TYPE      20       47        42       132         5
D39V11, multiclass

Clustering(40) Variable = Xq gain
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN CNV         8  12
  XQ GAIN WILD-TYPE 192 109
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               20               301 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               12               109 
$`XQ GAIN CNV`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6872 TCGA-BB-4225 TCGA-BB-4227 TCGA-CV-5970 
       37.28         8.15        12.99         4.60         4.37        13.35 
TCGA-CV-5977 TCGA-CV-6936 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-7102 TCGA-CV-7178 
       33.11         5.46        30.05         8.38         1.84        71.21 
TCGA-CV-7254 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 
       47.97        17.82        22.85        16.60         7.76        10.68 
TCGA-DQ-5629 TCGA-DQ-7592 
       16.96         9.83 

$`XQ GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         9.07         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79         2.07         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        6.12        95.05         9.04        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       71.05        20.52         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.13        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       57.47        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73         7.13       142.49         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.55        27.22        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73        11.84        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      XQ GAIN CNV XQ GAIN WILD-TYPE 
             1.84              0.07 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
            71.21            210.94 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
            13.17             14.04 
[1] "1.8 - 71.2 (13.2)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "XQ GAIN CNV"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MT-A51X 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "2"  
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          3   17
  XQ GAIN WILD-TYPE   88  217
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  FEMALE           3                88
  MALE            17               217
D40V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          4   16
  XQ GAIN WILD-TYPE   74  231
     clus
vv    XQ GAIN CNV XQ GAIN WILD-TYPE
  NO            4                74
  YES          16               231
D40V5, continuous
D40V6, continuous
D40V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          1    0
  XQ GAIN WILD-TYPE   64    6
    clus
vv   XQ GAIN CNV XQ GAIN WILD-TYPE
  M0           1                64
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  XQ GAIN CNV         3   1   2   0   3   4   1   6
  XQ GAIN WILD-TYPE 105  37   5   2  55  30   4  57
D40V8, multiclass
D40V9, continuous
D40V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  XQ GAIN CNV             1        2         2        10         1
  XQ GAIN WILD-TYPE      20       49        46       142         5
D40V11, multiclass

Clustering(41) Variable = 1p loss
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS CNV         9   7
  1P LOSS WILD-TYPE 191 114
      1P LOSS CNV 1P LOSS WILD-TYPE 
               16               305 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                7               114 
$`1P LOSS CNV`
TCGA-BA-6871 TCGA-CN-5360 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6992 
        2.07        28.47         4.70         9.07         7.36         2.73 
TCGA-CN-6997 TCGA-CQ-6225 TCGA-CR-7370 TCGA-CR-7371 TCGA-CV-5434 TCGA-CV-5440 
        3.29        13.25         3.42         3.06       108.33        89.82 
TCGA-CV-6935 TCGA-CV-6962 TCGA-CV-7424 TCGA-D6-6516 
        9.70         4.14        14.86        10.68 

$`1P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
        9.17         9.50         5.69        12.39         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         7.50         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        1.48         4.41         3.19         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         3.91         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       47.34        40.90        35.84        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      1P LOSS CNV 1P LOSS WILD-TYPE 
             2.07              0.07 
      1P LOSS CNV 1P LOSS WILD-TYPE 
           108.33            210.94 
      1P LOSS CNV 1P LOSS WILD-TYPE 
            8.215            14.330 
[1] "2.1 - 108.3 (8.2)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"1P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          3   13
  1P LOSS WILD-TYPE   88  221
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  FEMALE           3                88
  MALE            13               221
D41V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          4   12
  1P LOSS WILD-TYPE   74  235
     clus
vv    1P LOSS CNV 1P LOSS WILD-TYPE
  NO            4                74
  YES          12               235
D41V5, continuous
D41V6, continuous
D41V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          3    0
  1P LOSS WILD-TYPE   62    6
    clus
vv   1P LOSS CNV 1P LOSS WILD-TYPE
  M0           3                62
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  1P LOSS CNV         3   1   0   0   4   4   0   4
  1P LOSS WILD-TYPE 105  37   7   2  54  30   5  59
D41V8, multiclass
D41V9, continuous
D41V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  1P LOSS CNV             1        0         2        10         0
  1P LOSS WILD-TYPE      20       51        46       142         6
D41V11, multiclass

Clustering(42) Variable = 2p loss
D42V1, survival
                   sevent
clus2                 0   1
  2P LOSS CNV         3   1
  2P LOSS WILD-TYPE 197 120
      2P LOSS CNV 2P LOSS WILD-TYPE 
                4               317 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1               120 
$`2P LOSS CNV`
TCGA-CN-6011 TCGA-CQ-6218 TCGA-CV-5973 TCGA-CV-7432 
        7.50        28.60        57.07        84.49 

$`2P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42        11.21         4.21        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        16.27        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      2P LOSS CNV 2P LOSS WILD-TYPE 
             7.50              0.07 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            84.49            210.94 
      2P LOSS CNV 2P LOSS WILD-TYPE 
           42.835            13.640 
[1] "7.5 - 84.5 (42.8)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"2P LOSS WILD-TYPE" 
[1] "hr=" "2.6"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          2    2
  2P LOSS WILD-TYPE   89  232
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  FEMALE           2                89
  MALE             2               232
D42V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          2    2
  2P LOSS WILD-TYPE   76  245
     clus
vv    2P LOSS CNV 2P LOSS WILD-TYPE
  NO            2                76
  YES           2               245
D42V5, continuous
D42V6, continuous
D42V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          0    0
  2P LOSS WILD-TYPE   65    6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  2P LOSS CNV         2   1   0   0   1   0   0   0
  2P LOSS WILD-TYPE 106  37   7   2  57  34   5  63
D42V8, multiclass
D42V9, continuous
D42V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2P LOSS CNV             0        1         1         2         0
  2P LOSS WILD-TYPE      21       50        47       150         6
D42V11, multiclass

Clustering(43) Variable = 2q loss
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS CNV         8   1
  2Q LOSS WILD-TYPE 192 120
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                9               312 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                1               120 
$`2Q LOSS CNV`
TCGA-BA-5152 TCGA-BA-6871 TCGA-BB-7861 TCGA-CR-6472 TCGA-CR-7371 TCGA-CR-7399 
       27.78         2.07        10.19        34.52         3.06         5.92 
TCGA-CR-7402 TCGA-CV-5973 TCGA-DQ-7593 
       29.92        57.07        12.13 

$`2Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.42        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 
       29.52        30.54         7.10         5.13        35.41        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       17.06        13.35        17.75        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        4.18         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
       11.84         9.83        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             2.07              0.07 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
            57.07            210.94 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
           12.130            13.955 
[1] "2.1 - 57.1 (12.1)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"2Q LOSS WILD-TYPE" 
[1] "hr=" "3"  
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          3    6
  2Q LOSS WILD-TYPE   88  228
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  FEMALE           3                88
  MALE             6               228
D43V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          1    8
  2Q LOSS WILD-TYPE   77  239
     clus
vv    2Q LOSS CNV 2Q LOSS WILD-TYPE
  NO            1                77
  YES           8               239
D43V5, continuous
D43V6, continuous
D43V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          3    0
  2Q LOSS WILD-TYPE   62    6
    clus
vv   2Q LOSS CNV 2Q LOSS WILD-TYPE
  M0           3                62
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  2Q LOSS CNV         1   3   0   0   0   1   0   3
  2Q LOSS WILD-TYPE 107  35   7   2  58  33   5  60
D43V8, multiclass
D43V9, continuous
D43V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  2Q LOSS CNV             0        0         3         2         0
  2Q LOSS WILD-TYPE      21       51        45       150         6
D43V11, multiclass

Clustering(44) Variable = 3p loss
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS CNV        69  53
  3P LOSS WILD-TYPE 131  68
      3P LOSS CNV 3P LOSS WILD-TYPE 
              122               199 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               53                68 
$`3P LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6869 
       15.16        13.64         9.07         6.12        53.75         8.02 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7864 
        2.07        12.99         7.76         9.04        17.59        22.59 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4725 TCGA-CN-4729 
       37.87        14.04        14.33        20.52        10.19         5.13 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       12.13         7.89         9.17        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6992 
       11.54        11.57        13.58         7.50         4.70         2.73 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 
        3.68         3.29         1.51         2.93        29.46        10.42 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-7064 TCGA-CR-5243 TCGA-CR-5247 
       28.60        32.35        32.88        45.27        84.23        11.77 
TCGA-CR-5250 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6491 TCGA-CR-6493 
       26.24        36.99        11.90        11.34        11.51         9.27 
TCGA-CR-7364 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7390 
       47.18        35.84         3.42         0.99        27.02        29.82 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
        5.13        29.92       135.29       129.21       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5970 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       17.95        89.82        13.35        48.59         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6941 
       40.96         5.88         2.14         9.70         5.46        11.24 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6960 
       12.03        42.35        30.05        65.82         7.13        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 
        2.50         4.14       111.12        18.81         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 
        1.84        12.89        21.76        26.20         4.96         2.10 
TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 
       18.41         9.67         0.46        25.94         0.07       100.54 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CX-7082 TCGA-CX-7086 
       14.86        54.90        16.27        84.49        10.39         7.76 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 TCGA-D6-8568 TCGA-DQ-5629 
       10.68         8.22         7.82         5.00         3.45        16.96 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       18.02        14.04        18.90        11.84         9.83         1.15 
TCGA-F7-8298 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 
        0.46         4.34         0.07         0.16         1.81         0.99 
TCGA-IQ-7630 TCGA-MT-A51X 
        5.26         1.12 

$`3P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6873 
        5.88         7.96        57.44         5.00        14.79         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       13.87        20.98        71.05         6.31        13.55         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
        6.38        10.68        11.28        12.59        17.16        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        11.44        26.63        28.77        13.05         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 
        5.69        12.39        11.84        12.49         8.52         9.01 
TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        6.81         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.82         3.91         3.75        48.16        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6223 
       38.89        27.65        33.80        11.21         4.21        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5248 TCGA-CR-5249 
       33.07        16.70        22.78        29.59        54.64        37.87 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 
        6.02        10.22        11.64         7.66        12.46        15.75 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       39.12        47.34        40.90         3.06        24.95        29.23 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       47.01        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 
       30.54         7.10         5.92        35.41        48.36        17.16 
TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       17.75        57.07        33.11        13.32        24.43        90.08 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-7089 
       15.06         6.08        53.92        10.98         8.38        64.80 
TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7180 
      126.12        12.66         5.23        52.31        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7415 
       57.47        35.54        17.82       210.94        89.33        22.85 
TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7433 
       25.02        34.09        56.48       156.49         3.48        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 
       27.22        13.25         2.53         5.03         4.18         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7593 
        3.68        37.78        34.78        15.68        21.73        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 
       12.10        10.65         0.43         0.99         1.87         0.82 
TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.02         1.45         0.99        22.75         4.01         3.72 
TCGA-MT-A51W 
        0.46 

      3P LOSS CNV 3P LOSS WILD-TYPE 
             0.07              0.43 
      3P LOSS CNV 3P LOSS WILD-TYPE 
           135.29            210.94 
      3P LOSS CNV 3P LOSS WILD-TYPE 
            11.67             17.06 
[1] "0.1 - 135.3 (11.7)" "0.4 - 210.9 (17.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
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      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "3P LOSS CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "3P LOSS CNV" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "3P LOSS CNV"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV"       "3P LOSS CNV" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "3P LOSS CNV" 
[1] "hr=" "1.6"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV         23  100
  3P LOSS WILD-TYPE   68  134
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  FEMALE          23                68
  MALE           100               134
D44V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV         27   96
  3P LOSS WILD-TYPE   51  151
     clus
vv    3P LOSS CNV 3P LOSS WILD-TYPE
  NO           27                51
  YES          96               151
D44V5, continuous
D44V6, continuous
D44V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV         12    3
  3P LOSS WILD-TYPE   53    3
    clus
vv   3P LOSS CNV 3P LOSS WILD-TYPE
  M0          12                53
  MX           3                 3
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  3P LOSS CNV       37 10  2   1  27  13  4 25
  3P LOSS WILD-TYPE 71 28  5   1  31  21  1 38
D44V8, multiclass
D44V9, continuous
D44V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3P LOSS CNV             7       13        18        59         4
  3P LOSS WILD-TYPE      14       38        30        93         2
D44V11, multiclass

Clustering(45) Variable = 3q loss
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS CNV        11   8
  3Q LOSS WILD-TYPE 189 113
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               19               302 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
                8               113 
$`3Q LOSS CNV`
TCGA-BA-5555 TCGA-BB-7862 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-5365 
        6.12        17.59        37.87        10.19        12.13        11.54 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CR-6493 TCGA-CR-7374 TCGA-CR-7390 TCGA-CR-7398 
        3.68         3.29         9.27         0.99        29.82         5.13 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5976 TCGA-CV-6441 TCGA-CV-7252 TCGA-CV-7428 
      108.33        47.28        48.59         5.88         4.96        54.90 
TCGA-HD-7753 
        0.16 

$`3Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        10.19        13.87        22.59        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47         8.28        16.21        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.91         3.75         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       12.46        11.51        15.75        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 
       48.36       135.29        17.16       129.21        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        57.07        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        13.32        24.43        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       18.97        17.10        95.34        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        4.34         0.07         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      3Q LOSS CNV 3Q LOSS WILD-TYPE 
             0.16              0.07 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
           108.33            210.94 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
           10.190            14.185 
[1] "0.2 - 108.3 (10.2)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "3Q LOSS CNV"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "3Q LOSS CNV"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "3Q LOSS CNV"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          3   16
  3Q LOSS WILD-TYPE   88  218
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  FEMALE           3                88
  MALE            16               218
D45V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          3   16
  3Q LOSS WILD-TYPE   75  231
     clus
vv    3Q LOSS CNV 3Q LOSS WILD-TYPE
  NO            3                75
  YES          16               231
D45V5, continuous
D45V6, continuous
D45V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          1    0
  3Q LOSS WILD-TYPE   64    6
    clus
vv   3Q LOSS CNV 3Q LOSS WILD-TYPE
  M0           1                64
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  3Q LOSS CNV         8   0   0   0   6   3   1   1
  3Q LOSS WILD-TYPE 100  38   7   2  52  31   4  62
D45V8, multiclass
D45V9, continuous
D45V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  3Q LOSS CNV             1        2         1        13         1
  3Q LOSS WILD-TYPE      20       49        47       139         5
D45V11, multiclass

Clustering(46) Variable = 4p loss
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS CNV        44  34
  4P LOSS WILD-TYPE 156  87
      4P LOSS CNV 4P LOSS WILD-TYPE 
               78               243 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               34                87 
$`4P LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5555 
       15.16        13.64        37.28         9.07         8.15         6.12 
TCGA-BA-5558 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-7861 TCGA-BB-7871 
       53.75         2.07        95.05         9.04        10.19        14.04 
TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4730 TCGA-CN-4735 
       20.52        13.55        10.19         4.67        11.28        12.13 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       28.47        16.21         9.01         6.81         7.50         4.70 
TCGA-CN-6021 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6220 
        9.07         2.73         3.68         3.29        48.16        32.35 
TCGA-CQ-6225 TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7369 TCGA-CR-7370 
       13.25        54.64        34.52         7.66        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7404 
        3.06         0.99        27.02        29.82         5.13        48.36 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
      108.33        47.28        89.82         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
        9.70        26.43        11.24        42.35        15.06        30.05 
TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7103 
        7.13         2.50         4.14       111.12         5.23        52.31 
TCGA-CV-7261 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7430 TCGA-CV-7435 
       36.13         9.67        22.85        25.94        16.27       142.49 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7589 
        6.38        10.39        27.22        10.68        16.96        18.90 
TCGA-F7-8298 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.46         4.34         0.16         1.02         1.81         1.45 

$`4P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 
        9.30         6.25        27.78        57.90         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        7.76         6.12         4.60         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 
       13.87        22.59        20.98        37.87        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 
        6.31         6.38        10.68         5.13        12.59        17.16 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        3.75         1.51        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       28.60        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       29.59        84.23        11.77        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       24.95        29.23        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        47.01        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 
       29.92       135.29        17.16       129.21        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       40.96        13.32        24.43         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 
       21.86       126.08        19.79        12.03         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7090 
       65.82        10.98         8.38        28.31        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 
       18.81        12.66         7.99         9.01         1.84        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 
       57.47        35.54        17.82       210.94        89.33         0.46 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6517 
       16.60        21.99        10.55         7.76        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         3.68        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 
       10.65         1.15         0.43         0.99         1.87         0.07 
TCGA-HD-7754 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.82         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      4P LOSS CNV 4P LOSS WILD-TYPE 
             0.16              0.07 
      4P LOSS CNV 4P LOSS WILD-TYPE 
           142.49            210.94 
      4P LOSS CNV 4P LOSS WILD-TYPE 
            11.26             14.86 
[1] "0.2 - 142.5 (11.3)" "0.1 - 210.9 (14.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV"       "4P LOSS CNV" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV         15   63
  4P LOSS WILD-TYPE   76  171
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  FEMALE          15                76
  MALE            63               171
D46V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV         16   62
  4P LOSS WILD-TYPE   62  185
     clus
vv    4P LOSS CNV 4P LOSS WILD-TYPE
  NO           16                62
  YES          62               185
D46V5, continuous
D46V6, continuous
D46V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV          9    2
  4P LOSS WILD-TYPE   56    4
    clus
vv   4P LOSS CNV 4P LOSS WILD-TYPE
  M0           9                56
  MX           2                 4
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  4P LOSS CNV       23  8  1   0  15  14  1 14
  4P LOSS WILD-TYPE 85 30  6   2  43  20  4 49
D46V8, multiclass
D46V9, continuous
D46V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4P LOSS CNV             7        6        11        40         1
  4P LOSS WILD-TYPE      14       45        37       112         5
D46V11, multiclass

Clustering(47) Variable = 4q loss
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS CNV        30  20
  4Q LOSS WILD-TYPE 170 101
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               50               271 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               20               101 
$`4Q LOSS CNV`
TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5558 TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 
        9.07         6.12        53.75         4.37        37.87        14.04 
TCGA-BB-8601 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 
       20.52        10.19        12.13        28.47         6.81         4.70 
TCGA-CN-6021 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CR-5248 
        9.07         3.29        48.16        32.35        13.25        54.64 
TCGA-CR-6472 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 
       34.52        11.64         7.66         3.42         3.06         0.99 
TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 
        5.13        48.36       108.33        47.28        17.95        89.82 
TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6962 
       40.96         5.88         9.70        65.82         7.13         4.14 
TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7261 TCGA-CV-7413 
      111.12         5.23        52.31        12.89        36.13         9.67 
TCGA-CV-7418 TCGA-CV-7430 TCGA-CV-7438 TCGA-CX-7086 TCGA-CX-7219 TCGA-DQ-5629 
       25.94        16.27         6.38         7.76        27.22        16.96 
TCGA-DQ-7589 TCGA-DQ-7592 
       18.90         9.83 

$`4Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       27.78        57.90         5.88         7.96        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.60        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-BB-8596 
       17.59        13.87        22.59        20.98        14.33        71.05 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       11.28        12.59        17.16        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 
       11.57        12.49         8.52        13.58         9.01         7.50 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 
        3.91         3.68         3.75         1.51        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21         4.21        28.60        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 
       16.70        22.78        29.59        84.23        11.77        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6488 
       16.90         6.02        11.90        10.22        11.34        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 
       40.90        35.84        24.95        29.23        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 
       30.54         7.10         5.92        35.41        29.92       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       17.16       129.21        19.20        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
       33.11         7.07        43.23        13.32        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 
       30.05         6.08        53.92        10.98         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       126.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        9.01         1.84        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
       89.33         0.46        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 
       84.49        19.73         7.13       142.49        16.60        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73        11.84        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      4Q LOSS CNV 4Q LOSS WILD-TYPE 
             0.99              0.07 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
           111.12            210.94 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
            13.07             14.04 
[1] "1.0 - 111.1 (13.1)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
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"4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
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      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"4Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV         11   39
  4Q LOSS WILD-TYPE   80  195
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  FEMALE          11                80
  MALE            39               195
D47V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV         12   38
  4Q LOSS WILD-TYPE   66  209
     clus
vv    4Q LOSS CNV 4Q LOSS WILD-TYPE
  NO           12                66
  YES          38               209
D47V5, continuous
D47V6, continuous
D47V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV          4    1
  4Q LOSS WILD-TYPE   61    5
    clus
vv   4Q LOSS CNV 4Q LOSS WILD-TYPE
  M0           4                61
  MX           1                 5
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  4Q LOSS CNV       13  5  1   0   9   7  0 13
  4Q LOSS WILD-TYPE 95 33  6   2  49  27  5 50
D47V8, multiclass
D47V9, continuous
D47V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  4Q LOSS CNV             4        4         8        23         0
  4Q LOSS WILD-TYPE      17       47        40       129         6
D47V11, multiclass

Clustering(48) Variable = 5p loss
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS CNV         4   4
  5P LOSS WILD-TYPE 196 117
      5P LOSS CNV 5P LOSS WILD-TYPE 
                8               313 
      5P LOSS CNV 5P LOSS WILD-TYPE 
                4               117 
$`5P LOSS CNV`
TCGA-BB-7871 TCGA-CR-7364 TCGA-CV-5432 TCGA-CV-6940 TCGA-CV-6951 TCGA-CV-6962 
       14.04        47.18       129.21        26.43        30.05         4.14 
TCGA-CV-7242 TCGA-CV-7414 
       36.00         0.46 

$`5P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       22.59        20.98        37.87        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 
      126.08        19.79        12.03        42.35        15.06         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        4.18         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      5P LOSS CNV 5P LOSS WILD-TYPE 
             0.46              0.07 
      5P LOSS CNV 5P LOSS WILD-TYPE 
           129.21            210.94 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            28.24             13.58 
[1] "0.5 - 129.2 (28.2)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"5P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          3    5
  5P LOSS WILD-TYPE   88  229
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  FEMALE           3                88
  MALE             5               229
D48V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          0    8
  5P LOSS WILD-TYPE   78  239
     clus
vv    5P LOSS CNV 5P LOSS WILD-TYPE
  NO            0                78
  YES           8               239
D48V5, continuous
D48V6, continuous
D48V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          1    0
  5P LOSS WILD-TYPE   64    6
    clus
vv   5P LOSS CNV 5P LOSS WILD-TYPE
  M0           1                64
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  5P LOSS CNV         3   1   0   0   1   2   0   1
  5P LOSS WILD-TYPE 105  37   7   2  57  32   5  62
D48V8, multiclass
D48V9, continuous
D48V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5P LOSS CNV             0        1         3         4         0
  5P LOSS WILD-TYPE      21       50        45       148         6
D48V11, multiclass

Clustering(49) Variable = 5q loss
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS CNV        43  20
  5Q LOSS WILD-TYPE 157 101
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               63               258 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               20               101 
$`5Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7870 
       15.16         9.07         6.12         7.76         9.04        37.87 
TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4737 
       14.04        20.52        10.19         6.38        12.59         7.89 
TCGA-CN-4739 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6024 TCGA-CN-6992 
       11.44        28.47         6.81         4.70         7.36         2.73 
TCGA-CQ-5332 TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       10.42        33.07        11.77         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 
       40.90        35.84         3.42         3.06        29.82         5.13 
TCGA-CR-7399 TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5979 
        5.92       129.21        89.82        87.55        57.07        43.23 
TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-6960 
       40.96        90.08        26.43        30.05         8.38        28.31 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7103 TCGA-CV-7180 TCGA-CV-7242 
        4.14       111.12        18.81        52.31        10.75        36.00 
TCGA-CV-7243 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 
       31.33        36.13        35.54         0.46         0.07        14.86 
TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7594 
       10.39         7.76         7.82        18.02         9.83        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7753 
       10.65         1.15         0.16 

$`5Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 
        8.02        14.79         2.07        12.99         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
       95.05         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 
       13.87        22.59        20.98        14.33        71.05         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
       13.55         4.67        10.68         5.13        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.13        12.99        14.33        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
        9.17         9.50         5.69        12.39         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01         7.50         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       26.76        48.03        45.27        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       11.51        15.75        47.34        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      135.29        17.16       108.33        47.28        19.20        17.95 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       48.59        33.11         7.07        13.32        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6961 
        6.08        53.92        65.82        10.98         7.13         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.80       126.12        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
        1.84        12.89        21.76        71.21       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87        47.97         2.10        18.41        57.47 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       17.82       210.94        89.33         9.67        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
       16.60         6.38        21.99        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       15.68        14.04        18.90        21.73        11.84        12.13 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      5Q LOSS CNV 5Q LOSS WILD-TYPE 
             0.07              0.07 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
           129.21            210.94 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
           12.100            14.185 
[1] "0.1 - 129.2 (12.1)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
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"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV"       "5Q LOSS CNV" 
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      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "5Q LOSS CNV"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"5Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV         12   51
  5Q LOSS WILD-TYPE   79  183
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  FEMALE          12                79
  MALE            51               183
D49V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV         16   47
  5Q LOSS WILD-TYPE   62  200
     clus
vv    5Q LOSS CNV 5Q LOSS WILD-TYPE
  NO           16                62
  YES          47               200
D49V5, continuous
D49V6, continuous
D49V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV         11    1
  5Q LOSS WILD-TYPE   54    5
    clus
vv   5Q LOSS CNV 5Q LOSS WILD-TYPE
  M0          11                54
  MX           1                 5
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  5Q LOSS CNV       20 11  0   0  12   9  0 10
  5Q LOSS WILD-TYPE 88 27  7   2  46  25  5 53
D49V8, multiclass
D49V9, continuous
D49V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  5Q LOSS CNV             2        8        14        32         0
  5Q LOSS WILD-TYPE      19       43        34       120         6
D49V11, multiclass

Clustering(50) Variable = 6p loss
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS CNV        11   8
  6P LOSS WILD-TYPE 189 113
      6P LOSS CNV 6P LOSS WILD-TYPE 
               19               302 
      6P LOSS CNV 6P LOSS WILD-TYPE 
                8               113 
$`6P LOSS CNV`
TCGA-BA-5152 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4735 TCGA-CN-6010 TCGA-CN-6988 
       27.78         4.60        17.59        12.13         6.81         1.38 
TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CR-7371 TCGA-CR-7399 TCGA-CV-5434 
        3.91         3.29        10.42         3.06         5.92       108.33 
TCGA-CV-5436 TCGA-CV-6441 TCGA-CV-6960 TCGA-CV-7418 TCGA-DQ-5624 TCGA-DQ-7588 
       19.20         5.88        28.31        25.94        37.78        14.04 
TCGA-DQ-7591 
       11.84 

$`6P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 
       11.57        12.49         8.52        13.58         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         7.36         5.82 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.68         3.75         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 
       29.92        48.36       135.29        17.16       129.21        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        40.96        13.32        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18         3.68        34.78        16.96        15.68        18.02 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        21.73         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        1.15         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      6P LOSS CNV 6P LOSS WILD-TYPE 
             1.38              0.07 
      6P LOSS CNV 6P LOSS WILD-TYPE 
           108.33            210.94 
      6P LOSS CNV 6P LOSS WILD-TYPE 
           11.840            14.185 
[1] "1.4 - 108.3 (11.8)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"6P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          3   16
  6P LOSS WILD-TYPE   88  218
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  FEMALE           3                88
  MALE            16               218
D50V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          6   13
  6P LOSS WILD-TYPE   72  234
     clus
vv    6P LOSS CNV 6P LOSS WILD-TYPE
  NO            6                72
  YES          13               234
D50V5, continuous
D50V6, continuous
D50V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          3    0
  6P LOSS WILD-TYPE   62    6
    clus
vv   6P LOSS CNV 6P LOSS WILD-TYPE
  M0           3                62
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  6P LOSS CNV         5   1   0   0   5   4   0   4
  6P LOSS WILD-TYPE 103  37   7   2  53  30   5  59
D50V8, multiclass
D50V9, continuous
D50V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6P LOSS CNV             0        0         4        11         0
  6P LOSS WILD-TYPE      21       51        44       141         6
D50V11, multiclass

Clustering(51) Variable = 6q loss
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS CNV        13   8
  6Q LOSS WILD-TYPE 187 113
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               21               300 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
                8               113 
$`6Q LOSS CNV`
TCGA-BA-5152 TCGA-BA-5555 TCGA-BB-4225 TCGA-CN-6010 TCGA-CN-6988 TCGA-CN-6994 
       27.78         6.12         4.60         6.81         1.38         3.91 
TCGA-CR-5248 TCGA-CR-6473 TCGA-CR-6491 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5434 
       54.64        36.99        11.51         5.92        48.36       108.33 
TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7253 TCGA-CV-7416 TCGA-DQ-5624 
        5.88        53.92        65.82        11.87        25.02        37.78 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       18.02        14.04        11.84 

$`6Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
        6.25        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        84.23        11.77        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       12.46        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 
       35.41        29.92       135.29        17.16       129.21        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 
       42.35        15.06        30.05         6.08        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 
       26.20        18.97        17.10        95.34         4.96        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 
        3.68        34.78        16.96        15.68        18.90        21.73 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             1.38              0.07 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
           108.33            210.94 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
           14.040            13.755 
[1] "1.4 - 108.3 (14.0)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          4   17
  6Q LOSS WILD-TYPE   87  217
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  FEMALE           4                87
  MALE            17               217
D51V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          6   15
  6Q LOSS WILD-TYPE   72  232
     clus
vv    6Q LOSS CNV 6Q LOSS WILD-TYPE
  NO            6                72
  YES          15               232
D51V5, continuous
D51V6, continuous
D51V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          2    0
  6Q LOSS WILD-TYPE   63    6
    clus
vv   6Q LOSS CNV 6Q LOSS WILD-TYPE
  M0           2                63
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  6Q LOSS CNV         5   0   0   0   3   3   0   8
  6Q LOSS WILD-TYPE 103  38   7   2  55  31   5  55
D51V8, multiclass
D51V9, continuous
D51V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  6Q LOSS CNV             0        0         2        11         0
  6Q LOSS WILD-TYPE      21       51        46       141         6
D51V11, multiclass

Clustering(52) Variable = 7p loss
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS CNV         3   2
  7P LOSS WILD-TYPE 197 119
      7P LOSS CNV 7P LOSS WILD-TYPE 
                5               316 
      7P LOSS CNV 7P LOSS WILD-TYPE 
                2               119 
$`7P LOSS CNV`
TCGA-CR-6473 TCGA-CV-5435 TCGA-CV-7242 TCGA-CV-7430 TCGA-CX-7082 
       36.99        47.28        36.00        16.27        10.39 

$`7P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 
      135.29        17.16       129.21       108.33        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       10.75       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.81         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      7P LOSS CNV 7P LOSS WILD-TYPE 
            10.39              0.07 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            47.28            210.94 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            36.00             13.61 
[1] "10.4 - 47.3 (36.0)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          1    4
  7P LOSS WILD-TYPE   90  230
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  FEMALE           1                90
  MALE             4               230
D52V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          1    4
  7P LOSS WILD-TYPE   77  243
     clus
vv    7P LOSS CNV 7P LOSS WILD-TYPE
  NO            1                77
  YES           4               243
D52V5, continuous
D52V6, continuous
D52V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          0    0
  7P LOSS WILD-TYPE   65    6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  7P LOSS CNV         2   0   0   0   2   0   0   0
  7P LOSS WILD-TYPE 106  38   7   2  56  34   5  63
D52V8, multiclass
D52V9, continuous
D52V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7P LOSS CNV             0        1         0         3         0
  7P LOSS WILD-TYPE      21       50        48       149         6
D52V11, multiclass

Clustering(53) Variable = 7q loss
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS CNV         6   3
  7Q LOSS WILD-TYPE 194 118
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                9               312 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                3               118 
$`7Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BB-4224 TCGA-CN-4731 TCGA-CR-7374 
       15.16        13.64        27.78         9.04        12.59         0.99 
TCGA-CR-7398 TCGA-CV-6954 TCGA-CX-7082 
        5.13        65.82        10.39 

$`7Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        37.28         9.07         8.15         6.25        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
        4.67         6.38        10.68         5.13        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 
        3.42         3.06        24.95        29.23        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      7Q LOSS CNV 7Q LOSS WILD-TYPE 
             0.99              0.07 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
            65.82            210.94 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
            12.59             14.04 
[1] "1.0 - 65.8 (12.6)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          3    6
  7Q LOSS WILD-TYPE   88  228
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  FEMALE           3                88
  MALE             6               228
D53V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          2    7
  7Q LOSS WILD-TYPE   76  240
     clus
vv    7Q LOSS CNV 7Q LOSS WILD-TYPE
  NO            2                76
  YES           7               240
D53V5, continuous
D53V6, continuous
D53V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          2    0
  7Q LOSS WILD-TYPE   63    6
    clus
vv   7Q LOSS CNV 7Q LOSS WILD-TYPE
  M0           2                63
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  7Q LOSS CNV         2   0   0   0   2   2   0   3
  7Q LOSS WILD-TYPE 106  38   7   2  56  32   5  60
D53V8, multiclass
D53V9, continuous
D53V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  7Q LOSS CNV             0        1         0         6         0
  7Q LOSS WILD-TYPE      21       50        48       146         6
D53V11, multiclass

Clustering(54) Variable = 8p loss
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS CNV        39  32
  8P LOSS WILD-TYPE 161  89
      8P LOSS CNV 8P LOSS WILD-TYPE 
               71               250 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               32                89 
$`8P LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-7862 
       15.16        13.64         8.15         3.72         7.76        17.59 
TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5367 
       14.04        10.19         4.67        28.47         8.28        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6992 TCGA-CN-6996 
        8.52        13.58         7.50         5.06         2.73         3.75 
TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29         2.93        10.42         4.21        13.25        14.96 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CR-6471 TCGA-CR-7364 TCGA-CR-7372 TCGA-CR-7373 
       48.03        45.27        39.52        47.18        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5434 TCGA-CV-5441 
        0.99        19.92        27.02         5.92       108.33        87.55 
TCGA-CV-5973 TCGA-CV-6935 TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 
       57.07         9.70       126.08         6.08        65.82         7.13 
TCGA-CV-6960 TCGA-CV-7090 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7247 
       28.31       126.12         9.01         1.84        12.89        18.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 
        2.10        36.13        22.85         0.07       100.54       156.49 
TCGA-CV-7434 TCGA-CV-7438 TCGA-D6-6517 TCGA-D6-6825 TCGA-D6-A4Z9 TCGA-DQ-5624 
        7.13         6.38         8.22         5.00         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-8298 TCGA-H7-8501 
       34.78        18.02        18.90         9.83         0.46         1.87 
TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8635 TCGA-MT-A51X 
        4.34         0.16         1.81         0.99         1.12 

$`8P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         9.07         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79         2.07        12.99         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
        9.04         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       22.59        20.98        37.87        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
        6.31        13.55         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
        5.69        12.39        16.21        11.54        11.84        12.49 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01         6.81         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5323 
        1.38         5.82         3.91         3.68         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50        38.89        27.65        29.46        33.80 
TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
        4.21        26.76        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 
       35.84         3.42         3.06        31.96        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        89.82        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       64.73        17.06        13.35        17.75        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       26.43        11.24        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
       30.05        53.92        10.98         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 
       64.80       111.12        18.81        12.66         7.99         5.23 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87        47.97        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 
       25.02        25.94        34.09        14.86        56.48        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        84.49        19.73       142.49        16.60 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
       10.68         7.82         2.53         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
        4.18        16.96        15.68        14.04        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8489 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.43         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 
        0.07         0.82         1.02         1.45         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        5.26         4.01         3.72         0.46 

      8P LOSS CNV 8P LOSS WILD-TYPE 
             0.07              0.07 
      8P LOSS CNV 8P LOSS WILD-TYPE 
           156.49            210.94 
      8P LOSS CNV 8P LOSS WILD-TYPE 
            10.19             15.37 
[1] "0.1 - 156.5 (10.2)" "0.1 - 210.9 (15.4)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "8P LOSS CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "8P LOSS CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
      "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "8P LOSS CNV" 
[1] "hr=" "1.4"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         21   50
  8P LOSS WILD-TYPE   70  184
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  FEMALE          21                70
  MALE            50               184
D54V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         18   53
  8P LOSS WILD-TYPE   60  194
     clus
vv    8P LOSS CNV 8P LOSS WILD-TYPE
  NO           18                60
  YES          53               194
D54V5, continuous
D54V6, continuous
D54V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         14    3
  8P LOSS WILD-TYPE   51    3
    clus
vv   8P LOSS CNV 8P LOSS WILD-TYPE
  M0          14                51
  MX           3                 3
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  8P LOSS CNV       18 11  2   0  14  10  1 15
  8P LOSS WILD-TYPE 90 27  5   2  44  24  4 48
D54V8, multiclass
D54V9, continuous
D54V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8P LOSS CNV             7        5        14        35         2
  8P LOSS WILD-TYPE      14       46        34       117         4
D54V11, multiclass

Clustering(55) Variable = 8q loss
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS CNV         2   4
  8Q LOSS WILD-TYPE 198 117
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                6               315 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                4               117 
$`8Q LOSS CNV`
TCGA-BA-4076 TCGA-CN-5360 TCGA-CN-6011 TCGA-CV-6956 TCGA-CV-7100 TCGA-CV-7415 
       13.64        28.47         7.50         7.13         9.01        22.85 

$`8Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.13        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
        9.17         9.50         5.69        12.39         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 
       30.05         6.08        53.92        65.82        10.98         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       18.81        12.66         7.99         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      8Q LOSS CNV 8Q LOSS WILD-TYPE 
             7.13              0.07 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            28.47            210.94 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
           11.325            14.040 
[1] "7.1 - 28.5 (11.3)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"8Q LOSS WILD-TYPE" 
[1] "hr=" "2.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          0    6
  8Q LOSS WILD-TYPE   91  228
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  FEMALE           0                91
  MALE             6               228
D55V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          2    4
  8Q LOSS WILD-TYPE   76  243
     clus
vv    8Q LOSS CNV 8Q LOSS WILD-TYPE
  NO            2                76
  YES           4               243
D55V5, continuous
D55V6, continuous
D55V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          1    0
  8Q LOSS WILD-TYPE   64    6
    clus
vv   8Q LOSS CNV 8Q LOSS WILD-TYPE
  M0           1                64
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  8Q LOSS CNV         2   2   0   0   0   1   0   1
  8Q LOSS WILD-TYPE 106  36   7   2  58  33   5  62
D55V8, multiclass
D55V9, continuous
D55V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  8Q LOSS CNV             0        0         2         3         0
  8Q LOSS WILD-TYPE      21       51        46       149         6
D55V11, multiclass

Clustering(56) Variable = 9p loss
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS CNV        56  34
  9P LOSS WILD-TYPE 144  87
      9P LOSS CNV 9P LOSS WILD-TYPE 
               90               231 
      9P LOSS CNV 9P LOSS WILD-TYPE 
               34                87 
$`9P LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       15.16        13.64         9.07         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 
        2.07        12.99         7.76         9.04        17.59        14.33 
TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       20.52        13.55         4.67         6.38         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5360 TCGA-CN-5373 TCGA-CN-6024 
       12.59        12.13         7.89        28.47        13.58         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 
        1.38         2.73         3.29         2.93        10.42        32.88 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5247 
       13.25        14.96        45.27        33.07        29.59        11.77 
TCGA-CR-6472 TCGA-CR-6491 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7388 
       34.52        11.51        47.18        40.90         0.99        27.02 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.82         5.13       135.29       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 
       19.20        57.07        48.59        43.23         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7091 
        2.14        26.43        12.03        42.35        28.31       111.12 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 
       52.31        12.89        21.76        10.75        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7415 
       26.20         4.96         2.10        18.41         9.67        22.85 
TCGA-CV-7421 TCGA-CV-7434 TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 
        0.07         7.13       142.49        10.39         7.76         7.82 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7595 
        3.45         3.68        16.96        18.02        14.04        10.65 
TCGA-F7-7848 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8635 TCGA-IQ-7630 TCGA-MT-A51X 
        1.15         0.16         0.82         0.99         5.26         1.12 

$`9P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6873 
        6.12         5.88         7.96        53.75        57.44         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 
       13.87        22.59        20.98        37.87        14.04        71.05 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 
        6.31        10.19        10.68        17.16        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       11.57        12.49         8.52         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6994 
        3.19         9.07         6.61         6.18         5.82         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         1.51        48.16        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
       28.60        32.35        34.75        32.35         4.21        26.76 
TCGA-CQ-7063 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       48.03        16.70        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 
        7.66        12.46        15.75         9.27        39.12        47.34 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.42         3.06        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 
       17.06        13.35        17.75        33.11         7.07        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       13.32        24.43         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
       21.86        11.24       126.08        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
        2.50         4.14        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7183 
        7.99         9.01         5.23         1.84        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       56.68         4.73        47.47        18.97        17.10        95.34 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87        47.97        36.13        57.47        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
      210.94        89.33         0.46        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       16.27        84.49        19.73        16.60         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
       10.55        27.22        13.25        10.68         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        5.00         5.03         4.18         4.18        37.78        34.78 
TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       15.68        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.10         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 
        0.07         1.02         1.81         1.45         0.99        22.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        4.01         3.72         0.46 

      9P LOSS CNV 9P LOSS WILD-TYPE 
             0.07              0.07 
      9P LOSS CNV 9P LOSS WILD-TYPE 
           142.49            210.94 
      9P LOSS CNV 9P LOSS WILD-TYPE 
            12.94             15.68 
[1] "0.1 - 142.5 (12.9)" "0.1 - 210.9 (15.7)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "9P LOSS CNV" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MT-A51X 
      "9P LOSS CNV" 
[1] "hr=" "1.1"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV         21   70
  9P LOSS WILD-TYPE   70  164
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  FEMALE          21                70
  MALE            70               164
D56V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV         21   70
  9P LOSS WILD-TYPE   57  177
     clus
vv    9P LOSS CNV 9P LOSS WILD-TYPE
  NO           21                57
  YES          70               177
D56V5, continuous
D56V6, continuous
D56V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV         13    2
  9P LOSS WILD-TYPE   52    4
    clus
vv   9P LOSS CNV 9P LOSS WILD-TYPE
  M0          13                52
  MX           2                 4
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  9P LOSS CNV       28 14  2   1  20   7  1 16
  9P LOSS WILD-TYPE 80 24  5   1  38  27  4 47
D56V8, multiclass
D56V9, continuous
D56V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9P LOSS CNV             4       11        19        41         1
  9P LOSS WILD-TYPE      17       40        29       111         5
D56V11, multiclass

Clustering(57) Variable = 9q loss
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS CNV        20  11
  9Q LOSS WILD-TYPE 180 110
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               31               290 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               11               110 
$`9Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-CN-6024 TCGA-CQ-6221 
       15.16        14.79         2.07         7.76         7.36        32.88 
TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-7364 TCGA-CR-7374 TCGA-CR-7390 
       29.59        11.77        34.52        47.18         0.99        29.82 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5973 TCGA-CV-5979 TCGA-CV-6441 
      135.29       108.33        47.28        57.07        43.23         5.88 
TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-7091 TCGA-CV-7243 TCGA-CV-7252 TCGA-CV-7255 
       26.43        12.03       111.12        31.33         4.96         2.10 
TCGA-CV-7413 TCGA-CV-7435 TCGA-D6-6823 TCGA-DQ-5631 TCGA-F7-7848 TCGA-HD-7753 
        9.67       142.49         7.82        18.02         1.15         0.16 
TCGA-HD-8635 
        0.99 

$`9Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 
       57.44         5.00         8.02        12.99         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       22.78        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.42         3.06        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       48.36        17.16       129.21        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 
       17.75        48.59        33.11         7.07        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.70        21.86        11.24       126.08        19.79        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.13        12.10        10.65         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        1.87         4.34         0.07         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      9Q LOSS CNV 9Q LOSS WILD-TYPE 
             0.16              0.07 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
           142.49            210.94 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            15.16             13.61 
[1] "0.2 - 142.5 (15.2)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"9Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV         10   21
  9Q LOSS WILD-TYPE   81  213
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  FEMALE          10                81
  MALE            21               213
D57V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV          9   22
  9Q LOSS WILD-TYPE   69  225
     clus
vv    9Q LOSS CNV 9Q LOSS WILD-TYPE
  NO            9                69
  YES          22               225
D57V5, continuous
D57V6, continuous
D57V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV          5    1
  9Q LOSS WILD-TYPE   60    5
    clus
vv   9Q LOSS CNV 9Q LOSS WILD-TYPE
  M0           5                60
  MX           1                 5
                   vv
clus                N0 N1 N2 N2A N2B N2C N3 NX
  9Q LOSS CNV       10  6  1   1   4   2  0  6
  9Q LOSS WILD-TYPE 98 32  6   1  54  32  5 57
D57V8, multiclass
D57V9, continuous
D57V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  9Q LOSS CNV             2        3         7        12         0
  9Q LOSS WILD-TYPE      19       48        41       140         6
D57V11, multiclass

Clustering(58) Variable = 10p loss
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS CNV        26  21
  10P LOSS WILD-TYPE 174 100
      10P LOSS CNV 10P LOSS WILD-TYPE 
                47                274 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                21                100 
$`10P LOSS CNV`
TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6873 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-4723 
        9.07         5.00         3.72        37.87        20.52        13.55 
TCGA-CN-4737 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6988 
        7.89        28.47         8.28         7.50         1.48         1.38 
TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-6225 TCGA-CR-7369 TCGA-CR-7370 
        3.75        48.16         2.93        13.25        35.84         3.42 
TCGA-CR-7380 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5444 TCGA-CV-6936 
       19.92        12.89         5.13        47.28        64.73         5.46 
TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 
      126.08         6.08        65.82         2.50         4.14       126.12 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        9.01         1.84        71.21        31.33        26.20        18.97 
TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7434 TCGA-CX-7219 TCGA-D6-6517 
       25.94        14.86        54.90         7.13        27.22         8.22 
TCGA-D6-6823 TCGA-D6-6826 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-HD-8635 
        7.82         5.03        18.02        21.73         0.99 

$`10P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 
       57.44         8.02        14.79         2.07        12.99         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33        71.05         6.31        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 
        9.17         9.50         5.69        12.39        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 
        6.81         4.70         5.06         6.61         5.23         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         7.36         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        2.73         3.91         3.68         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.35         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       76.47        84.39        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       24.43         5.88        90.08         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43        11.24        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       42.35        15.06        30.05        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        8.38        28.31        64.80       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 
        7.99         5.23        52.31        12.89        21.76        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7248 
      114.94        56.68         4.73        47.47        36.00        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
      100.54        56.48       156.49         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6825 
       10.55         7.76        13.25        10.68         2.53         5.00 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        4.18         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         1.45         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      10P LOSS CNV 10P LOSS WILD-TYPE 
              0.99               0.07 
      10P LOSS CNV 10P LOSS WILD-TYPE 
            126.12             210.94 
      10P LOSS CNV 10P LOSS WILD-TYPE 
            12.890             14.185 
[1] "1.0 - 126.1 (12.9)" "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV         10   38
  10P LOSS WILD-TYPE   81  196
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  FEMALE           10                 81
  MALE             38                196
D58V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV         11   37
  10P LOSS WILD-TYPE   67  210
     clus
vv    10P LOSS CNV 10P LOSS WILD-TYPE
  NO            11                 67
  YES           37                210
D58V5, continuous
D58V6, continuous
D58V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV          4    2
  10P LOSS WILD-TYPE   61    4
    clus
vv   10P LOSS CNV 10P LOSS WILD-TYPE
  M0            4                 61
  MX            2                  4
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  10P LOSS CNV       14  6  2   0  12   3  1  9
  10P LOSS WILD-TYPE 94 32  5   2  46  31  4 54
D58V8, multiclass
D58V9, continuous
D58V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10P LOSS CNV             1        5         8        26         2
  10P LOSS WILD-TYPE      20       46        40       126         4
D58V11, multiclass

Clustering(59) Variable = 10q loss
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS CNV        12  14
  10Q LOSS WILD-TYPE 188 107
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                26                295 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                14                107 
$`10Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-5360 
       15.16         9.07         6.12        37.87        20.52        28.47 
TCGA-CQ-6225 TCGA-CR-6470 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7389 TCGA-CR-7398 
       13.25        50.01        35.84         3.42        12.89         5.13 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6961 TCGA-CV-6962 
      108.33        47.28         5.46        26.43         2.50         4.14 
TCGA-CV-7090 TCGA-CV-7245 TCGA-CV-7406 TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6823 
      126.12        26.20        57.47        25.94        14.86         7.82 
TCGA-DQ-5631 TCGA-DQ-7590 
       18.02        21.73 

$`10Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33        71.05         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.13        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       58.42        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       47.34        40.90         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 
       48.36       135.29        17.16       129.21        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        2.14         9.70        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       28.31        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 
       25.02         0.07        34.09       100.54        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
        7.76        27.22        13.25        10.68         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        16.96        15.68        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99        22.75         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              2.50               0.07 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
            126.12             210.94 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
             19.27              13.55 
[1] "2.5 - 126.1 (19.3)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          3   23
  10Q LOSS WILD-TYPE   88  211
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  FEMALE            3                 88
  MALE             23                211
D59V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          8   18
  10Q LOSS WILD-TYPE   70  229
     clus
vv    10Q LOSS CNV 10Q LOSS WILD-TYPE
  NO             8                 70
  YES           18                229
D59V5, continuous
D59V6, continuous
D59V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          4    1
  10Q LOSS WILD-TYPE   61    5
    clus
vv   10Q LOSS CNV 10Q LOSS WILD-TYPE
  M0            4                 61
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  10Q LOSS CNV        9  2  0   0   5   3  0  6
  10Q LOSS WILD-TYPE 99 36  7   2  53  31  5 57
D59V8, multiclass
D59V9, continuous
D59V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  10Q LOSS CNV             0        6         3        12         0
  10Q LOSS WILD-TYPE      21       45        45       140         6
D59V11, multiclass

Clustering(60) Variable = 11p loss
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS CNV        27  15
  11P LOSS WILD-TYPE 173 106
      11P LOSS CNV 11P LOSS WILD-TYPE 
                42                279 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                15                106 
$`11P LOSS CNV`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4227 
       15.16         9.07         2.07        12.99         7.76         4.37 
TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5374 
       12.13        26.63         9.50         8.28        11.54         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6988 TCGA-CN-6992 TCGA-CQ-5332 TCGA-CR-5247 
        7.50         4.70         1.38         2.73        10.42        11.77 
TCGA-CR-5248 TCGA-CR-7385 TCGA-CR-7399 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6936 
       54.64        32.78         5.92         5.88        90.08         5.46 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7253 
       26.43       126.08        42.35       111.12         1.84        11.87 
TCGA-CV-7415 TCGA-CV-7430 TCGA-CX-7082 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 
       22.85        16.27        10.39         3.45         3.68        37.78 
TCGA-DQ-5629 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 TCGA-HD-8635 
       16.96        12.10         1.15         0.46         0.16         0.99 

$`11P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        5.00         8.02        14.79         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        9.04         4.60        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
       22.59        20.98        37.87        14.04        14.33        71.05 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.52         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       10.68         5.13        11.28        12.59        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
        7.89        14.33        11.44        28.77        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
        5.69        12.39        28.47        16.21        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 
       12.49         8.52        13.58         6.81         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        6.18         7.36         5.82         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-5250 
       16.70        22.78        29.59        84.23        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       40.96        13.32        24.43         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 
        4.70        21.86        11.24        19.79        12.03        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        4.18        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-F7-8489 
       21.73        11.84         9.83        12.13        10.65         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
        0.99         1.87         4.34         0.07         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.81         1.45         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      11P LOSS CNV 11P LOSS WILD-TYPE 
              0.16               0.07 
      11P LOSS CNV 11P LOSS WILD-TYPE 
            126.08             210.94 
      11P LOSS CNV 11P LOSS WILD-TYPE 
             9.945             15.060 
[1] "0.2 - 126.1 (9.9)"  "0.1 - 210.9 (15.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
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        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV          9   34
  11P LOSS WILD-TYPE   82  200
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  FEMALE            9                 82
  MALE             34                200
D60V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV         12   31
  11P LOSS WILD-TYPE   66  216
     clus
vv    11P LOSS CNV 11P LOSS WILD-TYPE
  NO            12                 66
  YES           31                216
D60V5, continuous
D60V6, continuous
D60V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV          9    1
  11P LOSS WILD-TYPE   56    5
    clus
vv   11P LOSS CNV 11P LOSS WILD-TYPE
  M0            9                 56
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  11P LOSS CNV       12  5  3   0   5   5  3  9
  11P LOSS WILD-TYPE 96 33  4   2  53  29  2 54
D60V8, multiclass
D60V9, continuous
D60V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11P LOSS CNV             3        2         9        17         3
  11P LOSS WILD-TYPE      18       49        39       135         3
D60V11, multiclass

Clustering(61) Variable = 11q loss
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS CNV        39  23
  11Q LOSS WILD-TYPE 161  98
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                62                259 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                23                 98 
$`11Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 
       15.16        13.64        37.28         9.07         8.15         5.00 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-7866 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-4741 
       12.99         7.76        20.98         6.38        12.13        28.77 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       28.47         8.28        11.54         9.01         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-5323 TCGA-CQ-6221 TCGA-CR-5243 
        5.06         2.73         3.68        48.16        32.88        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6470 TCGA-CR-6487 TCGA-CR-7380 TCGA-CR-7399 
       54.64        37.87        50.01         7.66        19.92         5.92 
TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6441 
      129.21        89.82        87.55        13.35        33.11         5.88 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6961 
        9.70         5.46        21.86        26.43       126.08         2.50 
TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7247 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7415 
       18.81         1.84        18.97        57.47         0.46        22.85 
TCGA-CX-7082 TCGA-D6-6825 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7590 
       10.39         5.00         3.68        37.78        14.04        21.73 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-8502 TCGA-HD-7753 
       12.13        12.10         1.15         0.46         4.34         0.16 
TCGA-HD-8314 TCGA-HL-7533 
        1.45        22.75 

$`11Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 
        9.30         6.25        27.78        57.90         6.12         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        7.96        53.75        57.44         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        3.72         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 
       18.31        10.19        17.59        13.87        22.59        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 
       13.05         9.17         9.50         5.69        12.39        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        13.58         6.81 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.75         3.29         1.51        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.21        28.60        32.35        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5250 TCGA-CR-6467 
       16.70        22.78        29.59        11.77        26.24        58.42 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.34        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96        34.06        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.36       135.29        17.16       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 
       17.95        76.47        84.39        64.73        17.06        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6941 
       24.43        90.08         2.14        20.52         4.70        11.24 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       126.12       111.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        9.01         5.23        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 
       47.97         2.10        36.13        18.41        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
      210.94        89.33         9.67        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
       16.60         6.38        21.99        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 
       13.25        10.68         8.22         7.82         2.53         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.45         4.18        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7595 TCGA-F7-8489 
       18.02        18.90        11.84         9.83        10.65         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         1.87         0.07         0.82         1.02         1.81 
TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        0.99         0.99         5.26         4.01         3.72         0.46 
TCGA-MT-A51X 
        1.12 

      11Q LOSS CNV 11Q LOSS WILD-TYPE 
              0.16               0.07 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
            129.21             210.94 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             12.13              14.79 
[1] "0.2 - 129.2 (12.1)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
      "11Q LOSS CNV"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
      "11Q LOSS CNV"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
      "11Q LOSS CNV"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV          9   53
  11Q LOSS WILD-TYPE   82  181
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  FEMALE            9                 82
  MALE             53                181
D61V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV         21   41
  11Q LOSS WILD-TYPE   57  206
     clus
vv    11Q LOSS CNV 11Q LOSS WILD-TYPE
  NO            21                 57
  YES           41                206
D61V5, continuous
D61V6, continuous
D61V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV         11    1
  11Q LOSS WILD-TYPE   54    5
    clus
vv   11Q LOSS CNV 11Q LOSS WILD-TYPE
  M0           11                 54
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  11Q LOSS CNV       19  4  3   0  11   7  2 14
  11Q LOSS WILD-TYPE 89 34  4   2  47  27  3 49
D61V8, multiclass
D61V9, continuous
D61V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  11Q LOSS CNV             5        6         7        27         3
  11Q LOSS WILD-TYPE      16       45        41       125         3
D61V11, multiclass

Clustering(62) Variable = 12p loss
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS CNV         5   6
  12P LOSS WILD-TYPE 195 115
      12P LOSS CNV 12P LOSS WILD-TYPE 
                11                310 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 6                115 
$`12P LOSS CNV`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-CN-5365 TCGA-CR-7389 
        8.15         5.00        14.79        12.99        11.54        12.89 
TCGA-CV-6441 TCGA-CV-7090 TCGA-CV-7100 TCGA-DQ-5631 TCGA-HD-8224 
        5.88       126.12         9.01        18.02         1.81 

$`12P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       57.44         8.02         2.07         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47         8.28        16.21        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 
       64.80       111.12        18.81        12.66         7.99         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.45         0.99         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      12P LOSS CNV 12P LOSS WILD-TYPE 
              1.81               0.07 
      12P LOSS CNV 12P LOSS WILD-TYPE 
            126.12             210.94 
      12P LOSS CNV 12P LOSS WILD-TYPE 
            11.540             14.185 
[1] "1.8 - 126.1 (11.5)" "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          1   10
  12P LOSS WILD-TYPE   90  224
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  FEMALE            1                 90
  MALE             10                224
D62V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          5    6
  12P LOSS WILD-TYPE   73  241
     clus
vv    12P LOSS CNV 12P LOSS WILD-TYPE
  NO             5                 73
  YES            6                241
D62V5, continuous
D62V6, continuous
D62V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          0    0
  12P LOSS WILD-TYPE   65    6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  12P LOSS CNV         1   1   0   0   0   2   1   6
  12P LOSS WILD-TYPE 107  37   7   2  58  32   4  57
D62V8, multiclass
D62V9, continuous
D62V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12P LOSS CNV             0        1         2         2         1
  12P LOSS WILD-TYPE      21       50        46       150         5
D62V11, multiclass

Clustering(63) Variable = 12q loss
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS CNV         5   2
  12Q LOSS WILD-TYPE 195 119
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 7                314 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 2                119 
$`12Q LOSS CNV`
TCGA-BA-6868 TCGA-BA-6870 TCGA-CN-6024 TCGA-CR-6493 TCGA-CR-7390 TCGA-CV-7090 
        5.00        14.79         7.36         9.27        29.82       126.12 
TCGA-F7-7848 
        1.15 

$`12Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.18         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50         4.14        64.80       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 
        5.00         5.03         4.18         3.45         4.18         3.68 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       10.65         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      12Q LOSS CNV 12Q LOSS WILD-TYPE 
              1.15               0.07 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
            126.12             210.94 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
             9.270             13.955 
[1] "1.1 - 126.1 (9.3)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          1    6
  12Q LOSS WILD-TYPE   90  228
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  FEMALE            1                 90
  MALE              6                228
D63V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          2    5
  12Q LOSS WILD-TYPE   76  242
     clus
vv    12Q LOSS CNV 12Q LOSS WILD-TYPE
  NO             2                 76
  YES            5                242
D63V5, continuous
D63V6, continuous
D63V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          2    0
  12Q LOSS WILD-TYPE   63    6
    clus
vv   12Q LOSS CNV 12Q LOSS WILD-TYPE
  M0            2                 63
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  12Q LOSS CNV         1   1   0   0   1   1   0   3
  12Q LOSS WILD-TYPE 107  37   7   2  57  33   5  60
D63V8, multiclass
D63V9, continuous
D63V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  12Q LOSS CNV             0        1         0         4         0
  12Q LOSS WILD-TYPE      21       50        48       148         6
D63V11, multiclass

Clustering(64) Variable = 13q loss
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS CNV        43  20
  13Q LOSS WILD-TYPE 157 101
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                63                258 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                20                101 
$`13Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 
       15.16         9.07         6.12         8.02         2.07         7.76 
TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7871 TCGA-BB-8601 
        9.04         4.37        17.59        22.59        14.04        20.52 
TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5363 
       10.19        11.28        11.44        26.63        28.47         8.28 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 
        9.01         7.50         4.70         9.07         7.36         1.38 
TCGA-CQ-5323 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7364 
       48.16        29.46        32.35        34.52         7.66        47.18 
TCGA-CR-7372 TCGA-CR-7385 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5441 
       24.95        32.78        29.92        48.36       108.33        87.55 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7099 
       11.24        15.06        65.82         4.14       111.12         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7245 
        9.01         1.84        52.31        21.76        36.00        26.20 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7435 TCGA-CX-7082 
       18.41        57.47        25.94         0.07       142.49        10.39 
TCGA-CX-7219 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-7588 TCGA-DQ-7595 
       27.22         5.00         3.45         3.68        14.04        10.65 
TCGA-F7-7848 TCGA-HD-7917 TCGA-HD-8635 
        1.15         1.02         0.99 

$`13Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
       14.79        12.99         3.72         6.12        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       18.31        10.19        13.87        20.98        37.87        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       71.05         6.31        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
        5.13        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       14.33        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        8.52        13.58         6.81         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 
        1.48         4.41         3.19         6.61         6.18         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        27.65        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.13         5.92        35.41       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        89.82        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       42.35        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
        8.38        28.31         2.50        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       12.66         5.23        12.89        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
       56.68         4.73        47.47        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       22.85        25.02        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 
        7.13        16.60         6.38        21.99        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 
       13.25        10.68         8.22         7.82         2.53         5.03 
TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
       12.10         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.07         0.16         0.82         1.81         1.45         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      13Q LOSS CNV 13Q LOSS WILD-TYPE 
              0.07               0.07 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
            142.49             210.94 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
             11.44              14.10 
[1] "0.1 - 142.5 (11.4)" "0.1 - 210.9 (14.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         11   52
  13Q LOSS WILD-TYPE   80  182
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  FEMALE           11                 80
  MALE             52                182
D64V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         15   48
  13Q LOSS WILD-TYPE   63  199
     clus
vv    13Q LOSS CNV 13Q LOSS WILD-TYPE
  NO            15                 63
  YES           48                199
D64V5, continuous
D64V6, continuous
D64V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         13    2
  13Q LOSS WILD-TYPE   52    4
    clus
vv   13Q LOSS CNV 13Q LOSS WILD-TYPE
  M0           13                 52
  MX            2                  4
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  13Q LOSS CNV       20  6  3   0  10   9  1 12
  13Q LOSS WILD-TYPE 88 32  4   2  48  25  4 51
D64V8, multiclass
D64V9, continuous
D64V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  13Q LOSS CNV             5        8         9        31         1
  13Q LOSS WILD-TYPE      16       43        39       121         5
D64V11, multiclass

Clustering(65) Variable = 14q loss
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS CNV        10   6
  14Q LOSS WILD-TYPE 190 115
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                16                305 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                 6                115 
$`14Q LOSS CNV`
TCGA-BA-4078 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-7862 TCGA-CN-6992 TCGA-CQ-6221 
        9.07        14.79         2.07        17.59         2.73        32.88 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-7398 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-7406 
       50.01        34.52         5.13         9.70        21.86        57.47 
TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-HD-8224 
        4.18        18.02        21.73         1.81 

$`14Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        13.87        22.59        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.33        71.05        20.52         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       26.24        58.42        39.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.70        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.00         5.03         4.18         3.45         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       34.78        16.96        15.68        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        0.82         1.02         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      14Q LOSS CNV 14Q LOSS WILD-TYPE 
              1.81               0.07 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
             57.47             210.94 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
             16.19              13.64 
[1] "1.8 - 57.5 (16.2)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV          2   14
  14Q LOSS WILD-TYPE   89  220
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  FEMALE            2                 89
  MALE             14                220
D65V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV          4   12
  14Q LOSS WILD-TYPE   74  235
     clus
vv    14Q LOSS CNV 14Q LOSS WILD-TYPE
  NO             4                 74
  YES           12                235
D65V5, continuous
D65V6, continuous
D65V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV          2    0
  14Q LOSS WILD-TYPE   63    6
    clus
vv   14Q LOSS CNV 14Q LOSS WILD-TYPE
  M0            2                 63
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  14Q LOSS CNV         4   0   0   0   2   3   0   5
  14Q LOSS WILD-TYPE 104  38   7   2  56  31   5  58
D65V8, multiclass
D65V9, continuous
D65V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  14Q LOSS CNV             0        4         0         5         0
  14Q LOSS WILD-TYPE      21       47        48       147         6
D65V11, multiclass

Clustering(66) Variable = 15q loss
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS CNV        12  12
  15Q LOSS WILD-TYPE 188 109
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                24                297 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                12                109 
$`15Q LOSS CNV`
TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-7269 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-5363 
       57.90         5.00         7.76        37.87        10.19         8.28 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-7067 TCGA-CR-7402 TCGA-CV-5435 TCGA-CV-5970 
        3.29         1.51        16.70        29.92        47.28        13.35 
TCGA-CV-6441 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-7104 TCGA-CV-7242 TCGA-CV-7407 
        5.88        42.35        65.82        12.89        36.00        35.54 
TCGA-CV-7432 TCGA-CV-7438 TCGA-CX-7219 TCGA-D6-6517 TCGA-DQ-5631 TCGA-DQ-7592 
       84.49         6.38        27.22         8.22        18.02         9.83 

$`15Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       14.33        71.05        20.52         6.31        13.55         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.13        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.91         3.68         3.75        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       48.03        45.27        33.07        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        1.84        52.31        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        57.47        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        19.73         7.13       142.49        16.60 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.39        10.55         7.76        13.25        10.68 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        7.82         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        18.90        21.73        11.84        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              1.51               0.07 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
             84.49             210.94 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
            15.025             13.870 
[1] "1.5 - 84.5 (15.0)"  "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV          6   18
  15Q LOSS WILD-TYPE   85  216
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  FEMALE            6                 85
  MALE             18                216
D66V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV          6   18
  15Q LOSS WILD-TYPE   72  229
     clus
vv    15Q LOSS CNV 15Q LOSS WILD-TYPE
  NO             6                 72
  YES           18                229
D66V5, continuous
D66V6, continuous
D66V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV          1    0
  15Q LOSS WILD-TYPE   64    6
    clus
vv   15Q LOSS CNV 15Q LOSS WILD-TYPE
  M0            1                 64
  MX            0                  6
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  15Q LOSS CNV         7   1   0   0   4   2   2   8
  15Q LOSS WILD-TYPE 101  37   7   2  54  32   3  55
D66V8, multiclass
D66V9, continuous
D66V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  15Q LOSS CNV             2        4         3         8         2
  15Q LOSS WILD-TYPE      19       47        45       144         4
D66V11, multiclass

Clustering(67) Variable = 16p loss
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS CNV         7   5
  16P LOSS WILD-TYPE 193 116
      16P LOSS CNV 16P LOSS WILD-TYPE 
                12                309 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                 5                116 
$`16P LOSS CNV`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-7269 TCGA-BB-7870 TCGA-BB-8601 TCGA-CR-6473 
       13.64         9.07         7.76        37.87        20.52        36.99 
TCGA-CR-7374 TCGA-CR-7399 TCGA-CV-5436 TCGA-CV-7418 TCGA-CV-7424 TCGA-HD-8224 
        0.99         5.92        19.20        25.94        14.86         1.81 

$`16P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        22.59        20.98        14.04 
TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.33        71.05         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.13        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95        29.23        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        47.28        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 
       25.02         0.07        34.09       100.54        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        3.68        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
       12.10        10.65         1.15         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.87         4.34         0.07         0.16         0.82         1.02 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.45         0.99         0.99        22.75         5.26         4.01 
TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        3.72         0.46         1.12 

      16P LOSS CNV 16P LOSS WILD-TYPE 
              0.99               0.07 
      16P LOSS CNV 16P LOSS WILD-TYPE 
             37.87             210.94 
      16P LOSS CNV 16P LOSS WILD-TYPE 
             14.25              13.87 
[1] "1.0 - 37.9 (14.2)"  "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
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        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          2   10
  16P LOSS WILD-TYPE   89  224
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  FEMALE            2                 89
  MALE             10                224
D67V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          2   10
  16P LOSS WILD-TYPE   76  237
     clus
vv    16P LOSS CNV 16P LOSS WILD-TYPE
  NO             2                 76
  YES           10                237
D67V5, continuous
D67V6, continuous
D67V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          1    1
  16P LOSS WILD-TYPE   64    5
    clus
vv   16P LOSS CNV 16P LOSS WILD-TYPE
  M0            1                 64
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  16P LOSS CNV         1   2   0   0   3   2   0   2
  16P LOSS WILD-TYPE 107  36   7   2  55  32   5  61
D67V8, multiclass
D67V9, continuous
D67V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16P LOSS CNV             0        0         2         6         0
  16P LOSS WILD-TYPE      21       51        46       146         6
D67V11, multiclass

Clustering(68) Variable = 16q loss
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS CNV        18   7
  16Q LOSS WILD-TYPE 182 114
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                25                296 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                 7                114 
$`16Q LOSS CNV`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7861 
       13.64         9.07        57.90        57.44         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-8601 TCGA-CN-5360 TCGA-CN-6021 
       17.59        20.98        37.87        20.52        28.47         9.07 
TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-7398 TCGA-CV-5443 TCGA-CV-7414 
       84.23        58.42        36.99         5.13        84.39         0.46 
TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6827 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       25.94        14.86         4.18        18.90        21.73        11.84 
TCGA-HD-8224 
        1.81 

$`16Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
        6.12         5.88         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7864 
       95.05         9.04         4.37        18.31        13.87        22.59 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       14.04        14.33        71.05         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        29.59        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       76.47        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
       89.33         9.67        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       15.68        18.02        14.04         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 
        4.34         0.07         0.16         0.82         1.02         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      16Q LOSS CNV 16Q LOSS WILD-TYPE 
              0.46               0.07 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
             84.39             210.94 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
             18.90              13.45 
[1] "0.5 - 84.4 (18.9)"  "0.1 - 210.9 (13.4)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
      "16Q LOSS CNV"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
      "16Q LOSS CNV"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          3   22
  16Q LOSS WILD-TYPE   88  212
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  FEMALE            3                 88
  MALE             22                212
D68V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          6   19
  16Q LOSS WILD-TYPE   72  228
     clus
vv    16Q LOSS CNV 16Q LOSS WILD-TYPE
  NO             6                 72
  YES           19                228
D68V5, continuous
D68V6, continuous
D68V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          2    1
  16Q LOSS WILD-TYPE   63    5
    clus
vv   16Q LOSS CNV 16Q LOSS WILD-TYPE
  M0            2                 63
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  16Q LOSS CNV         5   3   0   0   3   2   0  10
  16Q LOSS WILD-TYPE 103  35   7   2  55  32   5  53
D68V8, multiclass
D68V9, continuous
D68V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  16Q LOSS CNV             1        1         4         7         0
  16Q LOSS WILD-TYPE      20       50        44       145         6
D68V11, multiclass

Clustering(69) Variable = 17p loss
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS CNV        27  18
  17P LOSS WILD-TYPE 173 103
      17P LOSS CNV 17P LOSS WILD-TYPE 
                45                276 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                18                103 
$`17P LOSS CNV`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 
        8.15         5.00         2.07        17.59        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-5360 TCGA-CN-5364 
       14.04        10.19        11.28        12.13        28.47        16.21 
TCGA-CN-6988 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-6472 TCGA-CR-6481 
        1.38        34.75        13.25        14.96        34.52        10.22 
TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5439 TCGA-CV-5970 
       47.18         3.06        29.82         5.13        17.95        13.35 
TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6961 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7245 
        5.88        53.92         2.50         1.84        10.75        26.20 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7423 TCGA-CV-7428 
       18.97        11.87        18.41        57.47       100.54        54.90 
TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6823 TCGA-D6-8569 TCGA-DQ-5629 
      142.49        21.99         7.76         7.82         4.18        16.96 
TCGA-DQ-7591 TCGA-DQ-7595 TCGA-HD-8635 
       11.84        10.65         0.99 

$`17P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       10.19        13.87        22.59        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.13 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39         8.28        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       32.88        32.35         4.21        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6482 
       36.99        18.51        16.90         6.02        11.90        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.42        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       84.39        64.73        17.06        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        71.21       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        31.33        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 
        4.96        47.97         2.10        36.13        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94         0.07        34.09        14.86        56.48       156.49 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.48        16.27        84.49        19.73         7.13        16.60 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
        6.38        10.39        10.55        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        8.22         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        3.68        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 
       18.90        21.73         9.83        12.13        12.10         1.15 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
        0.46         0.43         0.99         1.87         4.34         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 
        0.16         0.82         1.02         1.81         1.45         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      17P LOSS CNV 17P LOSS WILD-TYPE 
              0.99               0.07 
      17P LOSS CNV 17P LOSS WILD-TYPE 
            142.49             210.94 
      17P LOSS CNV 17P LOSS WILD-TYPE 
            13.350             13.955 
[1] "1.0 - 142.5 (13.3)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
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        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
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        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P LOSS WILD-TYPE"       "17P LOSS CNV"       "17P LOSS CNV" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV          8   37
  17P LOSS WILD-TYPE   83  197
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  FEMALE            8                 83
  MALE             37                197
D69V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV         10   35
  17P LOSS WILD-TYPE   68  212
     clus
vv    17P LOSS CNV 17P LOSS WILD-TYPE
  NO            10                 68
  YES           35                212
D69V5, continuous
D69V6, continuous
D69V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV          6    1
  17P LOSS WILD-TYPE   59    5
    clus
vv   17P LOSS CNV 17P LOSS WILD-TYPE
  M0            6                 59
  MX            1                  5
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  17P LOSS CNV       17  4  1   0   7   4  0 10
  17P LOSS WILD-TYPE 91 34  6   2  51  30  5 53
D69V8, multiclass
D69V9, continuous
D69V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17P LOSS CNV             0       11         8        18         0
  17P LOSS WILD-TYPE      21       40        40       134         6
D69V11, multiclass

Clustering(70) Variable = 17q loss
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS CNV         5   0
  17Q LOSS WILD-TYPE 195 121
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 5                316 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                 0                121 
$`17Q LOSS CNV`
TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-6011 TCGA-D6-6823 TCGA-HD-8635 
        5.00         2.07         7.50         7.82         0.99 

$`17Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 
        8.22         2.53         5.00         5.03         4.18         3.45 
TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        4.18         3.68        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 
        1.02         1.81         1.45         0.99        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              0.99               0.07 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              7.82             210.94 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
             5.000             14.185 
[1] "1.0 - 7.8 (5.0)"    "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
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        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr="     "1200000"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          1    4
  17Q LOSS WILD-TYPE   90  230
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  FEMALE            1                 90
  MALE              4                230
D70V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          3    2
  17Q LOSS WILD-TYPE   75  245
     clus
vv    17Q LOSS CNV 17Q LOSS WILD-TYPE
  NO             3                 75
  YES            2                245
D70V5, continuous
D70V6, continuous
D70V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          0    1
  17Q LOSS WILD-TYPE   65    5
    clus
vv   17Q LOSS CNV 17Q LOSS WILD-TYPE
  M0            0                 65
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  17Q LOSS CNV         2   1   0   0   0   0   0   2
  17Q LOSS WILD-TYPE 106  37   7   2  58  34   5  61
D70V8, multiclass
D70V9, continuous
D70V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  17Q LOSS CNV             0        1         1         1         0
  17Q LOSS WILD-TYPE      21       50        47       151         6
D70V11, multiclass

Clustering(71) Variable = 18p loss
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS CNV        16  13
  18P LOSS WILD-TYPE 184 108
      18P LOSS CNV 18P LOSS WILD-TYPE 
                29                292 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                13                108 
$`18P LOSS CNV`
TCGA-BA-6868 TCGA-BA-6870 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-6995 TCGA-CN-6996 
        5.00        14.79         6.38        12.13         3.68         3.75 
TCGA-CQ-6223 TCGA-CR-7367 TCGA-CR-7374 TCGA-CV-5435 TCGA-CV-6003 TCGA-CV-6933 
       34.75        47.34         0.99        47.28        40.96        90.08 
TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7091 
       26.43        42.35        53.92        28.31         2.50       111.12 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7245 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7429 
       52.31        12.89        26.20        36.13        35.54         3.48 
TCGA-CX-7219 TCGA-DQ-5629 TCGA-F7-7848 TCGA-HD-7229 TCGA-IQ-7630 
       27.22        16.96         1.15         0.07         5.26 

$`18P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        22.59        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 
       37.87        14.04        14.33        71.05        20.52         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         2.73         3.91         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       26.76        48.03        45.27        33.07        16.70        22.78 
TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       29.59        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       29.23        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       15.06        30.05         6.08        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
        8.38         4.14        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01         5.23         1.84        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        18.41        57.47        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.03         4.18         3.45         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 
       11.84         9.83        12.13        12.10        10.65         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7753 TCGA-HD-7754 
        0.43         0.99         1.87         4.34         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        4.01         3.72         0.46         1.12 

      18P LOSS CNV 18P LOSS WILD-TYPE 
              0.07               0.07 
      18P LOSS CNV 18P LOSS WILD-TYPE 
            111.12             210.94 
      18P LOSS CNV 18P LOSS WILD-TYPE 
            26.200             13.565 
[1] "0.1 - 111.1 (26.2)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          9   20
  18P LOSS WILD-TYPE   82  214
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  FEMALE            9                 82
  MALE             20                214
D71V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          7   22
  18P LOSS WILD-TYPE   71  225
     clus
vv    18P LOSS CNV 18P LOSS WILD-TYPE
  NO             7                 71
  YES           22                225
D71V5, continuous
D71V6, continuous
D71V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          2    0
  18P LOSS WILD-TYPE   63    6
    clus
vv   18P LOSS CNV 18P LOSS WILD-TYPE
  M0            2                 63
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  18P LOSS CNV       11  5  0   0   6   1  1  5
  18P LOSS WILD-TYPE 97 33  7   2  52  33  4 58
D71V8, multiclass
D71V9, continuous
D71V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18P LOSS CNV             1        4         5        14         1
  18P LOSS WILD-TYPE      20       47        43       138         5
D71V11, multiclass

Clustering(72) Variable = 18q loss
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS CNV        52  38
  18Q LOSS WILD-TYPE 148  83
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                90                231 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                38                 83 
$`18Q LOSS CNV`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6870 TCGA-BB-4224 TCGA-BB-7862 
       15.16         9.30         5.00        14.79         9.04        17.59 
TCGA-BB-7872 TCGA-BB-8601 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33        20.52        13.55        10.19         4.67         6.38 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5367 
       12.13         7.89         9.17         8.28        16.21        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6988 TCGA-CN-6995 TCGA-CN-6996 
        8.52        13.58         7.50         1.38         3.68         3.75 
TCGA-CQ-5326 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7064 
        2.93        28.60        34.75        13.25        14.96        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7373 TCGA-CR-7374 
       33.07        16.70         9.27        39.12        29.23         0.99 
TCGA-CR-7386 TCGA-CR-7399 TCGA-CV-5435 TCGA-CV-5441 TCGA-CV-5966 TCGA-CV-5970 
       47.01         5.92        47.28        87.55        17.06        13.35 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 
       57.07        48.59        33.11        43.23        40.96         5.88 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 
       90.08        26.43        12.03        42.35        53.92        65.82 
TCGA-CV-6960 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 
       28.31       126.12       111.12        12.66         5.23        12.89 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 TCGA-CV-7407 
       31.33        26.20        18.97        17.10        11.87        35.54 
TCGA-CV-7409 TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7434 TCGA-CV-7438 
       17.82       100.54         3.48        16.27         7.13         6.38 
TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 
       21.99         7.76        27.22        10.68         7.82         5.00 
TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5629 TCGA-DQ-7595 TCGA-F7-7848 TCGA-H7-8502 
        3.45         3.68        16.96        10.65         1.15         4.34 
TCGA-HD-7229 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8635 TCGA-IQ-7630 TCGA-MT-A51X 
        0.07         1.02         1.81         0.99         5.26         1.12 

$`18Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        37.28         9.07         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        8.02         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 
       95.05         4.60         4.37        18.31        10.19        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8596 TCGA-CN-4722 
       22.59        20.98        37.87        14.04        71.05         6.31 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       10.68         5.13        11.28        12.59        17.16        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        11.44        26.63        28.77        13.05         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
        5.69        12.39        28.47        11.54        11.84        12.49 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 
        7.36         5.82         2.73         3.91         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       48.16        39.68        21.50        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42        11.21         4.21        32.35        32.88 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 
       32.35         4.21        26.76        48.03        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       12.46        11.51        15.75        47.18        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7379 
       35.84         3.42         3.06        24.95        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        17.13        32.78        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        19.20        17.95        89.82 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-6433 
       76.47        84.39        64.73        17.75         7.07        13.32 
TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       24.43         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
       21.86        11.24       126.08        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
        6.08        10.98         7.13         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
       64.80        18.81         7.99         9.01         1.84        52.31 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
       47.47        36.00        95.34         4.96        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        57.47       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 
       14.86        56.48       156.49        54.90        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 
      142.49        16.60        10.39        10.55        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8569 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.03         4.18         4.18        37.78        34.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 
        9.83        12.13        12.10         0.46         0.43         0.99 
TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8314 TCGA-HD-8634 TCGA-HL-7533 
        1.87         0.16         0.82         1.45         0.99        22.75 
TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W 
        4.01         3.72         0.46 

      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              0.07               0.07 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
            126.12             210.94 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
             13.30              14.33 
[1] "0.1 - 126.1 (13.3)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
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        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "18Q LOSS CNV"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "18Q LOSS CNV"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
[1] "hr=" "1.4"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         21   69
  18Q LOSS WILD-TYPE   70  165
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  FEMALE           21                 70
  MALE             69                165
D72V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         21   69
  18Q LOSS WILD-TYPE   57  178
     clus
vv    18Q LOSS CNV 18Q LOSS WILD-TYPE
  NO            21                 57
  YES           69                178
D72V5, continuous
D72V6, continuous
D72V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         15    3
  18Q LOSS WILD-TYPE   50    3
    clus
vv   18Q LOSS CNV 18Q LOSS WILD-TYPE
  M0           15                 50
  MX            3                  3
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  18Q LOSS CNV       29 14  2   0  20   9  3 13
  18Q LOSS WILD-TYPE 79 24  5   2  38  25  2 50
D72V8, multiclass
D72V9, continuous
D72V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  18Q LOSS CNV             7       13        17        45         3
  18Q LOSS WILD-TYPE      14       38        31       107         3
D72V11, multiclass

Clustering(73) Variable = 19p loss
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS CNV        12  16
  19P LOSS WILD-TYPE 188 105
      19P LOSS CNV 19P LOSS WILD-TYPE 
                28                293 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                16                105 
$`19P LOSS CNV`
TCGA-BA-5149 TCGA-BA-5153 TCGA-BA-6868 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-5370 
        8.15        57.90         5.00        10.19         8.28         8.52 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-7364 
        2.73         3.68        32.35        34.75        13.25        47.18 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6945 
       39.12         3.42         5.88        90.08        11.24        12.03 
TCGA-CV-6948 TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7415 TCGA-CV-7430 TCGA-CV-7440 
       42.35         7.13        18.81        22.85        16.27        21.99 
TCGA-D6-6825 TCGA-D6-8569 TCGA-DQ-7592 TCGA-F7-7848 
        5.00         4.18         9.83         1.15 

$`19P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.91         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 
       10.42        11.21         4.21        28.60        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
        4.21        14.96        26.76        48.03        45.27        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       16.70        22.78        29.59        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
        9.27        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96        13.32        24.43         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       19.79        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12       111.12        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        57.47        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.82       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
      142.49        16.60         6.38        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        5.03         4.18         3.45         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-F7-8489 
       11.84        12.13        12.10        10.65         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      19P LOSS CNV 19P LOSS WILD-TYPE 
              1.15               0.07 
      19P LOSS CNV 19P LOSS WILD-TYPE 
             90.08             210.94 
      19P LOSS CNV 19P LOSS WILD-TYPE 
            10.715             14.330 
[1] "1.1 - 90.1 (10.7)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "19P LOSS CNV" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
      "19P LOSS CNV"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          3   25
  19P LOSS WILD-TYPE   88  209
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  FEMALE            3                 88
  MALE             25                209
D73V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          5   23
  19P LOSS WILD-TYPE   73  224
     clus
vv    19P LOSS CNV 19P LOSS WILD-TYPE
  NO             5                 73
  YES           23                224
D73V5, continuous
D73V6, continuous
D73V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          5    0
  19P LOSS WILD-TYPE   60    6
    clus
vv   19P LOSS CNV 19P LOSS WILD-TYPE
  M0            5                 60
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  19P LOSS CNV       12  4  1   0   1   2  2  6
  19P LOSS WILD-TYPE 96 34  6   2  57  32  3 57
D73V8, multiclass
D73V9, continuous
D73V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19P LOSS CNV             1        5         8         8         2
  19P LOSS WILD-TYPE      20       46        40       144         4
D73V11, multiclass

Clustering(74) Variable = 19q loss
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS CNV        10  11
  19Q LOSS WILD-TYPE 190 110
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                21                300 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                11                110 
$`19Q LOSS CNV`
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-6992 
        5.00        14.79         2.07        10.19         8.28         2.73 
TCGA-CN-6997 TCGA-CQ-6220 TCGA-CR-7365 TCGA-CR-7370 TCGA-CV-6441 TCGA-CV-6933 
        3.29        32.35        39.12         3.42         5.88        90.08 
TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7261 TCGA-CV-7415 
       11.24        42.35         7.13        28.31        36.13        22.85 
TCGA-CV-7430 TCGA-D6-6517 TCGA-D6-8569 
       16.27         8.22         4.18 

$`19Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       53.75        57.44         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        22.59        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 
       14.04        14.33        71.05        20.52         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.13        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         3.91         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       33.80        10.42        11.21         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
       48.03        45.27        33.07        16.70        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 
       12.46        11.51        15.75         9.27        47.18        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       13.32        24.43         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        10.68         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      19Q LOSS CNV 19Q LOSS WILD-TYPE 
              2.07               0.07 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
             90.08             210.94 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
             10.19              14.04 
[1] "2.1 - 90.1 (10.2)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV"       "19Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "19Q LOSS CNV"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          3   18
  19Q LOSS WILD-TYPE   88  216
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  FEMALE            3                 88
  MALE             18                216
D74V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          3   18
  19Q LOSS WILD-TYPE   75  229
     clus
vv    19Q LOSS CNV 19Q LOSS WILD-TYPE
  NO             3                 75
  YES           18                229
D74V5, continuous
D74V6, continuous
D74V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          3    0
  19Q LOSS WILD-TYPE   62    6
    clus
vv   19Q LOSS CNV 19Q LOSS WILD-TYPE
  M0            3                 62
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  19Q LOSS CNV       10  2  0   0   1   2  2  4
  19Q LOSS WILD-TYPE 98 36  7   2  57  32  3 59
D74V8, multiclass
D74V9, continuous
D74V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  19Q LOSS CNV             0        2         7         6         2
  19Q LOSS WILD-TYPE      21       49        41       146         4
D74V11, multiclass

Clustering(75) Variable = 20p loss
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS CNV        14   7
  20P LOSS WILD-TYPE 186 114
      20P LOSS CNV 20P LOSS WILD-TYPE 
                21                300 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 7                114 
$`20P LOSS CNV`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5555 TCGA-BA-6871 TCGA-BA-6873 
       15.16        13.64        37.28         6.12         2.07         3.72 
TCGA-BB-4227 TCGA-BB-7866 TCGA-BB-8601 TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6995 
        4.37        20.98        20.52         7.50         2.73         3.68 
TCGA-CR-6473 TCGA-CR-7364 TCGA-CR-7374 TCGA-CV-5440 TCGA-CV-7104 TCGA-CV-7247 
       36.99        47.18         0.99        89.82        12.89        18.97 
TCGA-CV-7418 TCGA-D6-6823 TCGA-DQ-7590 
       25.94         7.82        21.73 

$`20P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30         9.07         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        5.88         7.96        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       14.79        12.99         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.60        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        14.33        71.05         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         3.91         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 
       14.96        26.76        48.03        45.27        33.07        16.70 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       29.23        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        57.47        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        10.68         8.22         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 
        4.18         3.45         4.18         3.68        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       16.96        15.68        18.02        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
        0.43         0.99         1.87         4.34         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.82         1.02         1.81         1.45         0.99         0.99 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
       22.75         5.26         4.01         3.72         0.46         1.12 

      20P LOSS CNV 20P LOSS WILD-TYPE 
              0.99               0.07 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             89.82             210.94 
      20P LOSS CNV 20P LOSS WILD-TYPE 
            13.640             13.955 
[1] "1.0 - 89.8 (13.6)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
      "20P LOSS CNV" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          3   18
  20P LOSS WILD-TYPE   88  216
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  FEMALE            3                 88
  MALE             18                216
D75V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          4   17
  20P LOSS WILD-TYPE   74  230
     clus
vv    20P LOSS CNV 20P LOSS WILD-TYPE
  NO             4                 74
  YES           17                230
D75V5, continuous
D75V6, continuous
D75V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          3    1
  20P LOSS WILD-TYPE   62    5
    clus
vv   20P LOSS CNV 20P LOSS WILD-TYPE
  M0            3                 62
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  20P LOSS CNV         6   1   0   0   6   2   0   5
  20P LOSS WILD-TYPE 102  37   7   2  52  32   5  58
D75V8, multiclass
D75V9, continuous
D75V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20P LOSS CNV             0        1         3        11         0
  20P LOSS WILD-TYPE      21       50        45       141         6
D75V11, multiclass

Clustering(76) Variable = 20q loss
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS CNV         8   2
  20Q LOSS WILD-TYPE 192 119
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                10                311 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                 2                119 
$`20Q LOSS CNV`
TCGA-BA-6871 TCGA-BB-7866 TCGA-BB-8601 TCGA-CN-5360 TCGA-CR-6473 TCGA-CR-7402 
        2.07        20.98        20.52        28.47        36.99        29.92 
TCGA-CV-5440 TCGA-CV-7247 TCGA-CV-7418 TCGA-DQ-7590 
       89.82        18.97        25.94        21.73 

$`20Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 
       37.87        14.04        14.33        71.05         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.13        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7064 
       13.25         4.21        14.96        26.76        48.03        45.27 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       33.07        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        57.47 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        3.45         4.18         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        18.02        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 
       12.13        12.10        10.65         1.15         0.46         0.43 
TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        0.99         1.87         4.34         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      20Q LOSS CNV 20Q LOSS WILD-TYPE 
              2.07               0.07 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
             89.82             210.94 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
            23.835             13.350 
[1] "2.1 - 89.8 (23.8)"  "0.1 - 210.9 (13.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "20Q LOSS CNV" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "2.6"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          0   10
  20Q LOSS WILD-TYPE   91  224
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  FEMALE            0                 91
  MALE             10                224
D76V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          2    8
  20Q LOSS WILD-TYPE   76  239
     clus
vv    20Q LOSS CNV 20Q LOSS WILD-TYPE
  NO             2                 76
  YES            8                239
D76V5, continuous
D76V6, continuous
D76V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          1    1
  20Q LOSS WILD-TYPE   64    5
    clus
vv   20Q LOSS CNV 20Q LOSS WILD-TYPE
  M0            1                 64
  MX            1                  5
                    vv
clus                  N0  N1  N2 N2A N2B N2C  N3  NX
  20Q LOSS CNV         2   1   0   0   2   0   0   4
  20Q LOSS WILD-TYPE 106  37   7   2  56  34   5  59
D76V8, multiclass
D76V9, continuous
D76V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  20Q LOSS CNV             0        0         2         3         0
  20Q LOSS WILD-TYPE      21       51        46       149         6
D76V11, multiclass

Clustering(77) Variable = 21q loss
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS CNV        37  21
  21Q LOSS WILD-TYPE 163 100
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                58                263 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                21                100 
$`21Q LOSS CNV`
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-8601 
       53.75         5.00         2.07        17.59        22.59        20.52 
TCGA-CN-4737 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-6010 TCGA-CN-6994 TCGA-CN-6997 
        7.89         8.28        11.54         6.81         3.91         3.29 
TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CQ-6223 
       48.16         2.93        29.46        10.42        32.35        34.75 
TCGA-CQ-6225 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5247 TCGA-CR-6491 
       13.25        45.27        33.07        29.59        11.77        11.51 
TCGA-CR-7365 TCGA-CR-7369 TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5439 TCGA-CV-5440 
       39.12        35.84        27.02         5.92        17.95        89.82 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6941 
       33.11         7.07        43.23        40.96         2.14        11.24 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 
        7.13         8.38         2.50         4.14       126.12        12.66 
TCGA-CV-7103 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7261 
       52.31        10.75        36.00        26.20        47.97        36.13 
TCGA-CV-7409 TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-A4Z9 
       17.82       142.49        10.39         7.76        10.68         3.68 
TCGA-DQ-5629 TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 
       16.96         4.34         0.07         0.16 

$`21Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       10.19        13.87        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       71.05         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.13        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
        9.17         9.50         5.69        12.39        28.47        16.21 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
        1.38         5.82         2.73         3.68         3.75         1.51 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 
       39.68        21.50        38.89        27.65        33.80        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
        4.21        28.60        32.88        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7063 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       26.76        48.03        16.70        22.78        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.66        12.46        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.18        47.34        40.90         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      108.33        47.28        19.20        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88        90.08         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
       65.82        10.98        28.31        64.80       111.12        18.81 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23         1.84        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       71.21       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        57.47        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       21.99        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
        2.53         5.00         5.03         4.18         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7754 
        1.15         0.46         0.43         0.99         1.87         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
        1.02         1.81         1.45         0.99         0.99        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 TCGA-MT-A51W TCGA-MT-A51X 
        5.26         4.01         3.72         0.46         1.12 

      21Q LOSS CNV 21Q LOSS WILD-TYPE 
              0.07               0.07 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
            142.49             210.94 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
            12.955             14.040 
[1] "0.1 - 142.5 (13.0)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
      "21Q LOSS CNV"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
      "21Q LOSS CNV"       "21Q LOSS CNV"       "21Q LOSS CNV" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV         10   48
  21Q LOSS WILD-TYPE   81  186
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  FEMALE           10                 81
  MALE             48                186
D77V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV         11   47
  21Q LOSS WILD-TYPE   67  200
     clus
vv    21Q LOSS CNV 21Q LOSS WILD-TYPE
  NO            11                 67
  YES           47                200
D77V5, continuous
D77V6, continuous
D77V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV          7    2
  21Q LOSS WILD-TYPE   58    4
    clus
vv   21Q LOSS CNV 21Q LOSS WILD-TYPE
  M0            7                 58
  MX            2                  4
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  21Q LOSS CNV       18  5  1   0  13   6  4 11
  21Q LOSS WILD-TYPE 90 33  6   2  45  28  1 52
D77V8, multiclass
D77V9, continuous
D77V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  21Q LOSS CNV             3        9        11        25         4
  21Q LOSS WILD-TYPE      18       42        37       127         2
D77V11, multiclass

Clustering(78) Variable = 22q loss
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS CNV        17   8
  22Q LOSS WILD-TYPE 183 113
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                25                296 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                 8                113 
$`22Q LOSS CNV`
TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6871 TCGA-BB-4224 TCGA-BB-7861 TCGA-CN-4725 
        8.15        53.75         2.07         9.04        10.19        10.19 
TCGA-CN-4730 TCGA-CN-5370 TCGA-CN-6995 TCGA-CQ-7065 TCGA-CR-6493 TCGA-CR-7373 
       11.28         8.52         3.68        33.07         9.27        29.23 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5973 TCGA-CV-6441 TCGA-CV-6962 TCGA-CV-7413 
        5.13         5.92        57.07         5.88         4.14         9.67 
TCGA-CV-7421 TCGA-CX-7086 TCGA-D6-8569 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7593 
        0.07         7.76         4.18        18.02         9.83        12.13 
TCGA-IQ-7630 
        5.26 

$`22Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 
       27.78        57.90         6.12         5.88         7.96        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        6.12        95.05         4.60         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        22.59        20.98        37.87        14.04        14.33 
TCGA-BB-8596 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       71.05        20.52         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68         5.13        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       16.21        11.54        11.84        11.57        12.49        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       45.27        16.70        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.42         3.06        24.95         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       30.54         7.10        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        13.32        24.43        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        57.47        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         0.46        22.85        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-A4Z9 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        4.18         3.45         3.68        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7594 
       15.68        14.04        18.90        21.73        11.84        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
       10.65         1.15         0.46         0.43         0.99         1.87 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        4.34         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45         0.99         0.99        22.75         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              0.07               0.07 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
             57.07             210.94 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              9.04              15.01 
[1] "0.1 - 57.1 (9.0)"   "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6021         TCGA-CN-6022         TCGA-CN-6023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6024         TCGA-CN-6988         TCGA-CN-6989 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6992         TCGA-CN-6994         TCGA-CN-6995 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CN-6996         TCGA-CN-6997         TCGA-CN-6998 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5327         TCGA-CQ-5329 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5330         TCGA-CQ-5331         TCGA-CQ-5332 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6221         TCGA-CQ-6223 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7063 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7064         TCGA-CQ-7065         TCGA-CQ-7067 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CQ-7069         TCGA-CR-5243 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7379 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7389         TCGA-CR-7390         TCGA-CR-7391 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CR-7402 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7404         TCGA-CV-5430         TCGA-CV-5431 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-BB-8596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-8601         TCGA-CN-4722         TCGA-CN-4723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6011         TCGA-CN-6012 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6823         TCGA-D6-6824 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-8568         TCGA-D6-8569         TCGA-D6-A4Z9 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5624         TCGA-DQ-5625         TCGA-DQ-5629 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5630         TCGA-DQ-5631         TCGA-DQ-7588 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7589         TCGA-DQ-7590         TCGA-DQ-7591 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7592         TCGA-DQ-7593         TCGA-DQ-7594 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7595         TCGA-F7-7848         TCGA-F7-8298 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-8489         TCGA-H7-7774         TCGA-H7-8501 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H7-8502         TCGA-HD-7229         TCGA-HD-7753 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HD-7917         TCGA-HD-8224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8314         TCGA-HD-8634         TCGA-HD-8635 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HL-7533         TCGA-IQ-7630         TCGA-IQ-7631 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7632         TCGA-MT-A51W         TCGA-MT-A51X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          4   21
  22Q LOSS WILD-TYPE   87  213
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  FEMALE            4                 87
  MALE             21                213
D78V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          4   21
  22Q LOSS WILD-TYPE   74  226
     clus
vv    22Q LOSS CNV 22Q LOSS WILD-TYPE
  NO             4                 74
  YES           21                226
D78V5, continuous
D78V6, continuous
D78V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          5    0
  22Q LOSS WILD-TYPE   60    6
    clus
vv   22Q LOSS CNV 22Q LOSS WILD-TYPE
  M0            5                 60
  MX            0                  6
                    vv
clus                 N0 N1 N2 N2A N2B N2C N3 NX
  22Q LOSS CNV        9  6  0   0   2   2  0  6
  22Q LOSS WILD-TYPE 99 32  7   2  56  32  5 57
D78V8, multiclass
D78V9, continuous
D78V10, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  22Q LOSS CNV             0        6         5         9         0
  22Q LOSS WILD-TYPE      21       45        43       143         6
D78V11, multiclass

Clustering(79) Variable = Xq loss
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS CNV         4   3
  XQ LOSS WILD-TYPE 196 118
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                7               314 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                3               118 
$`XQ LOSS CNV`
TCGA-BA-4078 TCGA-CN-4725 TCGA-CQ-6218 TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7398 
        9.07        10.19        28.60        17.13        29.82         5.13 
TCGA-CV-7255 
        2.10 

$`XQ LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        22.59 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 TCGA-BB-8601 
       20.98        37.87        14.04        14.33        71.05        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.13 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7063 
       32.35        13.25         4.21        14.96        26.76        48.03 
TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       45.27        33.07        16.70        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 
        0.99        31.96        34.06        19.92        26.17        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       57.47        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 TCGA-D6-A4Z9 TCGA-DQ-5624 
        5.03         4.18         3.45         4.18         3.68        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 
        1.15         0.46         0.43         0.99         1.87         4.34 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.99        22.75         5.26         4.01         3.72 
TCGA-MT-A51W TCGA-MT-A51X 
        0.46         1.12 

      XQ LOSS CNV XQ LOSS WILD-TYPE 
             2.10              0.07 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
            29.82            210.94 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
           10.190            13.955 
[1] "2.1 - 29.8 (10.2)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-BB-8596 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-8601        TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-CN-4726        TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4730        TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4736        TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5356        TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5363        TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5374        TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6013        TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6023        TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6992        TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220        TCGA-CQ-6221 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7063        TCGA-CQ-7064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CQ-7069 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7376        TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7383        TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7389        TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7393        TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7398        TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7404        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5440        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5973        TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5979        TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6936        TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6940        TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6945        TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6952        TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6956        TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6962        TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7101        TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7177        TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7235        TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7243        TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7429        TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7219        TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6823        TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6827        TCGA-D6-8568        TCGA-D6-8569        TCGA-D6-A4Z9 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-F7-8489 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H7-7774        TCGA-H7-8501        TCGA-H7-8502        TCGA-HD-7229 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917        TCGA-HD-8224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8314        TCGA-HD-8634        TCGA-HD-8635        TCGA-HL-7533 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632        TCGA-MT-A51W 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MT-A51X 
"XQ LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          4    3
  XQ LOSS WILD-TYPE   87  231
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  FEMALE           4                87
  MALE             3               231
D79V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          2    5
  XQ LOSS WILD-TYPE   76  242
     clus
vv    XQ LOSS CNV XQ LOSS WILD-TYPE
  NO            2                76
  YES           5               242
D79V5, continuous
D79V6, continuous
D79V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          2    0
  XQ LOSS WILD-TYPE   63    6
    clus
vv   XQ LOSS CNV XQ LOSS WILD-TYPE
  M0           2                63
  MX           0                 6
                   vv
clus                 N0  N1  N2 N2A N2B N2C  N3  NX
  XQ LOSS CNV         5   0   0   0   1   0   0   0
  XQ LOSS WILD-TYPE 103  38   7   2  57  34   5  63
D79V8, multiclass
D79V9, continuous
D79V10, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IVA STAGE IVB
  XQ LOSS CNV             1        2         0         3         0
  XQ LOSS WILD-TYPE      20       49        48       149         6
D79V11, multiclass
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V5 
                 "NUMBERPACKYEARSSMOKED" 
                                      V6 
             "YEAROFTOBACCOSMOKINGONSET" 
                                      V7 
                    "DISTANT.METASTASIS" 
                                      V8 
                 "LYMPH.NODE.METASTASIS" 
                                      V9 
                 "NUMBER.OF.LYMPH.NODES" 
                                     V10 
                       "TUMOR.STAGECODE" 
                                     V11 
                 "NEOPLASM.DISEASESTAGE" 
> q(save="no")
