
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/423696/HNSC-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/HNSC-TP/3537314/HNSC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=374, in cluster file=306, common to both=306
[1]  45 306
[1] "NSD1 MUTATION ANALYSIS"
[1] 3
  NSD1 MUTATED NSD1 WILD-TYPE 
            33            273 
  NSD1 MUTATED NSD1 WILD-TYPE 
            33            273 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              64              242 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              64              242 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              65              241 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              65              241 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            10            296 
  HRAS MUTATED HRAS WILD-TYPE 
            10            296 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           214             92 
  TP53 MUTATED TP53 WILD-TYPE 
           214             92 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              17              289 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              17              289 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              57              249 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              57              249 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            72            234 
  FAT1 MUTATED FAT1 WILD-TYPE 
            72            234 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             27             279 
  CASP8 MUTATED CASP8 WILD-TYPE 
             27             279 
[1] "JUB MUTATION ANALYSIS"
[1] 3
  JUB MUTATED JUB WILD-TYPE 
           18           288 
  JUB MUTATED JUB WILD-TYPE 
           18           288 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            56            250 
  MLL2 MUTATED MLL2 WILD-TYPE 
            56            250 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             291 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15             291 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             14             292 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             14             292 
[1] "ZNF750 MUTATION ANALYSIS"
[1] 3
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              13              293 
  ZNF750 MUTATED ZNF750 WILD-TYPE 
              13              293 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           48           258 
  FLG MUTATED FLG WILD-TYPE 
           48           258 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            7           299 
  B2M MUTATED B2M WILD-TYPE 
            7           299 
[1] "IL32 MUTATION ANALYSIS"
[1] 3
  IL32 MUTATED IL32 WILD-TYPE 
             4            302 
  IL32 MUTATED IL32 WILD-TYPE 
             4            302 
[1] "EP300 MUTATION ANALYSIS"
[1] 3
  EP300 MUTATED EP300 WILD-TYPE 
             25             281 
  EP300 MUTATED EP300 WILD-TYPE 
             25             281 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             4            302 
  RHOA MUTATED RHOA WILD-TYPE 
             4            302 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             297 
  HLA-A MUTATED HLA-A WILD-TYPE 
              9             297 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            11            295 
  CTCF MUTATED CTCF WILD-TYPE 
            11            295 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           10           296 
  RB1 MUTATED RB1 WILD-TYPE 
           10           296 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              10              296 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              10              296 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             70             236 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             70             236 
[1] "NECAB1 MUTATION ANALYSIS"
[1] 3
  NECAB1 MUTATED NECAB1 WILD-TYPE 
               6              300 
  NECAB1 MUTATED NECAB1 WILD-TYPE 
               6              300 
[1] "KRTAP1-5 MUTATION ANALYSIS"
[1] 3
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 3                303 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 3                303 
[1] "MAPK1 MUTATION ANALYSIS"
[1] 3
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              4             302 
  MAPK1 MUTATED MAPK1 WILD-TYPE 
              4             302 
[1] "PLSCR1 MUTATION ANALYSIS"
[1] 3
  PLSCR1 MUTATED PLSCR1 WILD-TYPE 
               5              301 
  PLSCR1 MUTATED PLSCR1 WILD-TYPE 
               5              301 
[1] "CNPY3 MUTATION ANALYSIS"
[1] 3
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              3             303 
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              3             303 
[1] "EPB41L3 MUTATION ANALYSIS"
[1] 3
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               16               290 
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               16               290 
[1] "RAC1 MUTATION ANALYSIS"
[1] 3
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            297 
  RAC1 MUTATED RAC1 WILD-TYPE 
             9            297 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            10            296 
  CUL3 MUTATED CUL3 WILD-TYPE 
            10            296 
[1] "TRPV4 MUTATION ANALYSIS"
[1] 3
  TRPV4 MUTATED TRPV4 WILD-TYPE 
              7             299 
  TRPV4 MUTATED TRPV4 WILD-TYPE 
              7             299 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
            10            296 
  PRB2 MUTATED PRB2 WILD-TYPE 
            10            296 
[1] "PRB1 MUTATION ANALYSIS"
[1] 3
  PRB1 MUTATED PRB1 WILD-TYPE 
             7            299 
  PRB1 MUTATED PRB1 WILD-TYPE 
             7            299 
[1] "WHSC1 MUTATION ANALYSIS"
[1] 3
  WHSC1 MUTATED WHSC1 WILD-TYPE 
             10             296 
  WHSC1 MUTATED WHSC1 WILD-TYPE 
             10             296 
[1] "STEAP4 MUTATION ANALYSIS"
[1] 3
  STEAP4 MUTATED STEAP4 WILD-TYPE 
              10              296 
  STEAP4 MUTATED STEAP4 WILD-TYPE 
              10              296 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 7                299 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                 7                299 
[1] "KCNA3 MUTATION ANALYSIS"
[1] 3
  KCNA3 MUTATED KCNA3 WILD-TYPE 
              8             298 
  KCNA3 MUTATED KCNA3 WILD-TYPE 
              8             298 
[1] "EPDR1 MUTATION ANALYSIS"
[1] 3
  EPDR1 MUTATED EPDR1 WILD-TYPE 
              6             300 
  EPDR1 MUTATED EPDR1 WILD-TYPE 
              6             300 
[1] "SLC26A7 MUTATION ANALYSIS"
[1] 3
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
                8               298 
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
                8               298 
[1] "OR8D4 MUTATION ANALYSIS"
[1] 3
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              6             300 
  OR8D4 MUTATED OR8D4 WILD-TYPE 
              6             300 
[1] "POU4F2 MUTATION ANALYSIS"
[1] 3
  POU4F2 MUTATED POU4F2 WILD-TYPE 
               7              299 
  POU4F2 MUTATED POU4F2 WILD-TYPE 
               7              299 
[1] "FCRL4 MUTATION ANALYSIS"
[1] 3
  FCRL4 MUTATED FCRL4 WILD-TYPE 
             13             293 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
             13             293 
[1] "TXK MUTATION ANALYSIS"
[1] 3
  TXK MUTATED TXK WILD-TYPE 
            3           303 
  TXK MUTATED TXK WILD-TYPE 
            3           303 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 306 columns.

Variable 1:'CN_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 306 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=8, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = NSD1 MUTATION ANALYSIS
D1V1, multiclass
D1V2, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           22             78
  CLUS_2            9             95
  CLUS_3            2            100
D1V3, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            9             64
  CLUS_2            7             45
  CLUS_3            3             24
  CLUS_4            2             54
D1V4, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           10            102
  CLUS_2            9             69
  CLUS_3            2             16
D1V5, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1           23             94
  CLUS_2            3             90
  CLUS_3            7             82
D1V6, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            4             80
  CLUS_3           26             92
D1V7, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            9             80
  CLUS_2           20             99
  CLUS_3            4             92
D1V8, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            6            107
  CLUS_3           26            158
D1V9, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            8             66
  CLUS_2           17             89
  CLUS_3            4             84
D1V10, multiclass
        clus
vv       NSD1 MUTATED NSD1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2           15             66
  CLUS_3           10             66
  CLUS_4            4            102

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
D2V1, multiclass
D2V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             14               86
  CLUS_2             30               74
  CLUS_3             20               82
D2V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             16               57
  CLUS_2              7               45
  CLUS_3              9               18
  CLUS_4              7               49
D2V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20               92
  CLUS_2             16               62
  CLUS_3              3               15
D2V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             29               88
  CLUS_2             13               80
  CLUS_3             21               68
D2V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             16               81
  CLUS_2             20               64
  CLUS_3             27               91
D2V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22               67
  CLUS_2             30               89
  CLUS_3             12               84
D2V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1                6
  CLUS_2             16               97
  CLUS_3             47              137
D2V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             18               56
  CLUS_2             27               79
  CLUS_3             12               76
D2V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1                4
  CLUS_2             19               62
  CLUS_3             20               56
  CLUS_4             17               89

Clustering(3) Variable = CDKN2A MUTATION ANALYSIS
D3V1, multiclass
D3V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             25               75
  CLUS_2             19               85
  CLUS_3             21               81
D3V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21               52
  CLUS_2              6               46
  CLUS_3             10               17
  CLUS_4             16               40
D3V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             26               86
  CLUS_2             23               55
  CLUS_3              4               14
D3V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21               96
  CLUS_2             18               75
  CLUS_3             25               64
D3V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             21               76
  CLUS_2             23               61
  CLUS_3             20               98
D3V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             19               70
  CLUS_2             21               98
  CLUS_3             24               72
D3V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3                4
  CLUS_2             28               85
  CLUS_3             33              151
D3V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             19               55
  CLUS_2             17               89
  CLUS_3             22               66
D3V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2                3
  CLUS_2             12               69
  CLUS_3             16               60
  CLUS_4             28               78

Clustering(4) Variable = HRAS MUTATION ANALYSIS
D4V1, multiclass
D4V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            4             96
  CLUS_2            0            104
  CLUS_3            6             96
D4V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             51
  CLUS_3            3             24
  CLUS_4            1             55
D4V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3            109
  CLUS_2            4             74
  CLUS_3            0             18
D4V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1            116
  CLUS_2            1             92
  CLUS_3            8             81
D4V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             96
  CLUS_2            8             76
  CLUS_3            1            117
D4V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            6             83
  CLUS_2            3            116
  CLUS_3            1             95
D4V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1            112
  CLUS_3            9            175
D4V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            6             68
  CLUS_2            1            105
  CLUS_3            3             85
D4V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0              5
  CLUS_2            2             79
  CLUS_3            6             70
  CLUS_4            2            104

Clustering(5) Variable = TP53 MUTATION ANALYSIS
D5V1, multiclass
D5V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           75             25
  CLUS_2           61             43
  CLUS_3           78             24
D5V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           59             14
  CLUS_2           34             18
  CLUS_3           20              7
  CLUS_4           47              9
D5V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           84             28
  CLUS_2           62             16
  CLUS_3           14              4
D5V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           74             43
  CLUS_2           76             17
  CLUS_3           62             27
D5V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           80             17
  CLUS_2           61             23
  CLUS_3           71             47
D5V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           59             30
  CLUS_2           78             41
  CLUS_3           76             20
D5V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5              2
  CLUS_2           93             20
  CLUS_3          115             69
D5V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           46             28
  CLUS_2           72             34
  CLUS_3           70             18
D5V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4              1
  CLUS_2           49             32
  CLUS_3           49             27
  CLUS_4           86             20

Clustering(6) Variable = NFE2L2 MUTATION ANALYSIS
D6V1, multiclass
D6V2, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               96
  CLUS_2              9               95
  CLUS_3              4               98
D6V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              6               46
  CLUS_3              3               24
  CLUS_4              1               55
D6V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              8              104
  CLUS_2              6               72
  CLUS_3              0               18
D6V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7              110
  CLUS_2              5               88
  CLUS_3              5               84
D6V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              5               92
  CLUS_2              7               77
  CLUS_3              5              113
D6V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              8              111
  CLUS_3              7               89
D6V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              5              108
  CLUS_3             10              174
D6V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               71
  CLUS_2              5              101
  CLUS_3              8               80
D6V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              4               77
  CLUS_3              5               71
  CLUS_4              6              100

Clustering(7) Variable = NOTCH1 MUTATION ANALYSIS
D7V1, multiclass
D7V2, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             18               82
  CLUS_2              9               95
  CLUS_3             30               72
D7V3, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             20               53
  CLUS_2              6               46
  CLUS_3              1               26
  CLUS_4             12               44
D7V4, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             18               94
  CLUS_2             19               59
  CLUS_3              2               16
D7V5, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             10              107
  CLUS_2             22               71
  CLUS_3             25               64
D7V6, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             20               77
  CLUS_2             29               55
  CLUS_3              8              110
D7V7, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             26               63
  CLUS_2              9              110
  CLUS_3             21               75
D7V8, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2             25               88
  CLUS_3             31              153
D7V9, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1             17               57
  CLUS_2              8               98
  CLUS_3             23               65
D7V10, multiclass
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              5               76
  CLUS_3             21               55
  CLUS_4             22               84

Clustering(8) Variable = FAT1 MUTATION ANALYSIS
D8V1, multiclass
D8V2, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           25             75
  CLUS_2           21             83
  CLUS_3           26             76
D8V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           16             57
  CLUS_2           14             38
  CLUS_3            5             22
  CLUS_4           15             41
D8V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           28             84
  CLUS_2           16             62
  CLUS_3            6             12
D8V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           21             96
  CLUS_2           27             66
  CLUS_3           22             67
D8V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           26             71
  CLUS_2           22             62
  CLUS_3           22             96
D8V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           22             67
  CLUS_2           26             93
  CLUS_3           23             73
D8V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            2              5
  CLUS_2           31             82
  CLUS_3           38            146
D8V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1           23             51
  CLUS_2           20             86
  CLUS_3           23             65
D8V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            1              4
  CLUS_2           13             68
  CLUS_3           21             55
  CLUS_4           31             75

Clustering(9) Variable = CASP8 MUTATION ANALYSIS
D9V1, multiclass
D9V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            11              89
  CLUS_2             1             103
  CLUS_3            15              87
D9V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             9              64
  CLUS_2             4              48
  CLUS_3             4              23
  CLUS_4             5              51
D9V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            11             101
  CLUS_2            10              68
  CLUS_3             1              17
D9V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             5              88
  CLUS_3            19              70
D9V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6              91
  CLUS_2            18              66
  CLUS_3             1             117
D9V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            10              79
  CLUS_2             7             112
  CLUS_3             9              87
D9V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1               6
  CLUS_2            10             103
  CLUS_3            15             169
D9V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            14              60
  CLUS_2             2             104
  CLUS_3             8              80
D9V10, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1               4
  CLUS_2             2              79
  CLUS_3            11              65
  CLUS_4            10              96

Clustering(10) Variable = JUB MUTATION ANALYSIS
D10V1, multiclass
D10V2, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           9            91
  CLUS_2           6            98
  CLUS_3           3            99
D10V3, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7            66
  CLUS_2           4            48
  CLUS_3           1            26
  CLUS_4           0            56
D10V4, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           3           109
  CLUS_2           8            70
  CLUS_3           1            17
D10V5, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           5           112
  CLUS_2           4            89
  CLUS_3           8            81
D10V6, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           4            93
  CLUS_2           8            76
  CLUS_3           5           113
D10V7, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           7            82
  CLUS_2           8           111
  CLUS_3           3            93
D10V8, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           0             7
  CLUS_2           7           106
  CLUS_3          11           173
D10V9, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           9            65
  CLUS_2           8            98
  CLUS_3           1            87
D10V10, multiclass
        clus
vv       JUB MUTATED JUB WILD-TYPE
  CLUS_1           0             5
  CLUS_2           4            77
  CLUS_3           7            69
  CLUS_4           7            99

Clustering(11) Variable = MLL2 MUTATION ANALYSIS
D11V1, multiclass
D11V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           22             78
  CLUS_2           25             79
  CLUS_3            9             93
D11V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           16             57
  CLUS_2            9             43
  CLUS_3            3             24
  CLUS_4           10             46
D11V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           19             93
  CLUS_2           14             64
  CLUS_3            5             13
D11V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           29             88
  CLUS_2           11             82
  CLUS_3           15             74
D11V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            9             88
  CLUS_2           16             68
  CLUS_3           30             88
D11V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           19             70
  CLUS_2           26             93
  CLUS_3           10             86
D11V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            0              7
  CLUS_2           12            101
  CLUS_3           43            141
D11V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           11             63
  CLUS_2           24             82
  CLUS_3           12             76
D11V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            0              5
  CLUS_2           21             60
  CLUS_3           15             61
  CLUS_4           11             95

Clustering(12) Variable = FBXW7 MUTATION ANALYSIS
D12V1, multiclass
D12V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              95
  CLUS_2             6              98
  CLUS_3             4              98
D12V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             6              46
  CLUS_3             1              26
  CLUS_4             3              53
D12V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8             104
  CLUS_2             2              76
  CLUS_3             1              17
D12V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             6             111
  CLUS_2             3              90
  CLUS_3             4              85
D12V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             3              81
  CLUS_3             7             111
D12V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              84
  CLUS_2             6             113
  CLUS_3             4              92
D12V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             5             108
  CLUS_3            10             174
D12V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              70
  CLUS_2             5             101
  CLUS_3             3              85
D12V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             5              76
  CLUS_3             3              73
  CLUS_4             4             102

Clustering(13) Variable = EPHA2 MUTATION ANALYSIS
D13V1, multiclass
D13V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            10              90
  CLUS_2             1             103
  CLUS_3             3              99
D13V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              68
  CLUS_2             4              48
  CLUS_3             1              26
  CLUS_4             2              54
D13V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             5              73
  CLUS_3             1              17
D13V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             4              89
  CLUS_3             5              84
D13V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             5              92
  CLUS_2             4              80
  CLUS_3             3             115
D13V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             4             115
  CLUS_3             5              91
D13V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             6             107
  CLUS_3             6             178
D13V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             8              66
  CLUS_2             0             106
  CLUS_3             2              86
D13V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0              81
  CLUS_3             6              70
  CLUS_4             4             102

Clustering(14) Variable = ZNF750 MUTATION ANALYSIS
D14V1, multiclass
D14V2, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               99
  CLUS_2             10               94
  CLUS_3              2              100
D14V3, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               50
  CLUS_3              0               27
  CLUS_4              2               54
D14V4, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              4              108
  CLUS_2              1               77
  CLUS_3              1               17
D14V5, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              8              109
  CLUS_2              3               90
  CLUS_3              1               88
D14V6, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               94
  CLUS_2              1               83
  CLUS_3              8              110
D14V7, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              7              112
  CLUS_3              3               93
D14V8, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              5              108
  CLUS_3              8              176
D14V9, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              1               73
  CLUS_2              7               99
  CLUS_3              4               84
D14V10, multiclass
        clus
vv       ZNF750 MUTATED ZNF750 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              5               76
  CLUS_3              2               74
  CLUS_4              5              101

Clustering(15) Variable = FLG MUTATION ANALYSIS
D15V1, multiclass
D15V2, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          13            87
  CLUS_2          24            80
  CLUS_3          11            91
D15V3, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          13            60
  CLUS_2           8            44
  CLUS_3           6            21
  CLUS_4           6            50
D15V4, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          15            97
  CLUS_2          15            63
  CLUS_3           3            15
D15V5, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          24            93
  CLUS_2          10            83
  CLUS_3          12            77
D15V6, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          10            87
  CLUS_2          14            70
  CLUS_3          22            96
D15V7, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          14            75
  CLUS_2          25            94
  CLUS_3           9            87
D15V8, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           0             7
  CLUS_2          13           100
  CLUS_3          35           149
D15V9, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           9            65
  CLUS_2          23            83
  CLUS_3           9            79
D15V10, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           0             5
  CLUS_2          17            64
  CLUS_3          12            64
  CLUS_4          12            94

Clustering(16) Variable = B2M MUTATION ANALYSIS
D16V1, multiclass
D16V2, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            99
  CLUS_2           5            99
  CLUS_3           1           101
D16V3, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            1           207 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4734    TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4739    TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5356    TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5363    TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5369    TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-7065    TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7100 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7416    TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7424    TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7432    TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7438    TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IQ-7630    TCGA-IQ-7632 
"B2M WILD-TYPE" "B2M WILD-TYPE" 
D16V4, multiclass
[1] "Remove cluster labels:" "B2M MUTATED"           
clus
  B2M MUTATED B2M WILD-TYPE 
            1           207 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4731    TCGA-CN-4733 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4734    TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-4739    TCGA-CN-4740    TCGA-CN-4741    TCGA-CN-4742    TCGA-CN-5355 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5356    TCGA-CN-5358    TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5363    TCGA-CN-5364    TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-5369    TCGA-CN-5370    TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CQ-7065    TCGA-CQ-7068    TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7100 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7101    TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7178    TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7238    TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7248    TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7255    TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7410    TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7416    TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7424    TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7432    TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-CV-7438    TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-IQ-7630    TCGA-IQ-7632 
"B2M WILD-TYPE" "B2M WILD-TYPE" 
D16V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4           113
  CLUS_2           1            92
  CLUS_3           1            88
D16V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            96
  CLUS_2           1            83
  CLUS_3           4           114
D16V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            89
  CLUS_2           5           114
  CLUS_3           2            94
D16V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0             7
  CLUS_2           2           111
  CLUS_3           5           179
D16V9, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            74
  CLUS_2           5           101
  CLUS_3           2            86
D16V10, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0             5
  CLUS_2           4            77
  CLUS_3           1            75
  CLUS_4           2           104

Clustering(17) Variable = IL32 MUTATION ANALYSIS
D17V1, multiclass
D17V2, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            3             97
  CLUS_2            1            103
  CLUS_3            0            102
D17V3, multiclass
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             2            206 
    TCGA-BA-4074     TCGA-BA-4078     TCGA-BA-5149     TCGA-BA-5151 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5152     TCGA-BA-5153     TCGA-BA-5555     TCGA-BA-5556 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5557     TCGA-BA-5559     TCGA-BA-6869     TCGA-BA-6870 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-6871     TCGA-BA-6872     TCGA-BA-6873     TCGA-BB-4217 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4723     TCGA-CN-4725     TCGA-CN-4726     TCGA-CN-4727 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4728     TCGA-CN-4729     TCGA-CN-4730     TCGA-CN-4731 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4733     TCGA-CN-4734     TCGA-CN-4735     TCGA-CN-4736 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4737     TCGA-CN-4738     TCGA-CN-4739     TCGA-CN-4740 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4741     TCGA-CN-4742     TCGA-CN-5355     TCGA-CN-5356 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5358     TCGA-CN-5359     TCGA-CN-5360     TCGA-CN-5361 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5363     TCGA-CN-5364     TCGA-CN-5365     TCGA-CN-5366 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5367     TCGA-CN-5369     TCGA-CN-5370     TCGA-CN-5373 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5374     TCGA-CN-6010     TCGA-CN-6011     TCGA-CN-6012 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6013     TCGA-CN-6016     TCGA-CN-6017     TCGA-CN-6018 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6019     TCGA-CN-6020     TCGA-CN-6021     TCGA-CN-6022 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6023     TCGA-CN-6024     TCGA-CN-6988     TCGA-CN-6989 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6992     TCGA-CN-6994     TCGA-CN-6995     TCGA-CN-6996 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6997     TCGA-CN-6998     TCGA-CQ-5323     TCGA-CQ-5324 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5325     TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5330     TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5334 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6218     TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6222     TCGA-CQ-6224     TCGA-CQ-6225     TCGA-CQ-6227 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6228     TCGA-CQ-6229     TCGA-CQ-7065     TCGA-CQ-7068 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5430     TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441     TCGA-CV-5442 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966     TCGA-CV-5970 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976     TCGA-CV-5977 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6003     TCGA-CV-6433 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6436     TCGA-CV-6441     TCGA-CV-6933     TCGA-CV-6934 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6935     TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6938 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6939     TCGA-CV-6940     TCGA-CV-6941     TCGA-CV-6942 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6943     TCGA-CV-6945     TCGA-CV-6948     TCGA-CV-6950 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6951     TCGA-CV-6952     TCGA-CV-6953     TCGA-CV-6954 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6955     TCGA-CV-6956     TCGA-CV-6959     TCGA-CV-6960 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6961     TCGA-CV-6962     TCGA-CV-7089     TCGA-CV-7090 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7091     TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7101     TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7177     TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7235     TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7243     TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7250     TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7254 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7255     TCGA-CV-7261     TCGA-CV-7263     TCGA-CV-7406 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7407     TCGA-CV-7410     TCGA-CV-7411     TCGA-CV-7413 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7414     TCGA-CV-7415     TCGA-CV-7416     TCGA-CV-7418 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7421     TCGA-CV-7422     TCGA-CV-7423     TCGA-CV-7424 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7425     TCGA-CV-7427     TCGA-CV-7429     TCGA-CV-7430 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7432     TCGA-CV-7433     TCGA-CV-7434     TCGA-CV-7435 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7437     TCGA-CV-7438     TCGA-CV-7440     TCGA-CX-7085 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CX-7086     TCGA-CX-7219     TCGA-D6-6515     TCGA-D6-6516 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6517     TCGA-D6-6823     TCGA-D6-6824     TCGA-D6-6825 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6826     TCGA-D6-6827     TCGA-DQ-7591     TCGA-DQ-7592 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-IQ-7630     TCGA-IQ-7632 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
D17V4, multiclass
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             2            206 
    TCGA-BA-4074     TCGA-BA-4078     TCGA-BA-5149     TCGA-BA-5151 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5152     TCGA-BA-5153     TCGA-BA-5555     TCGA-BA-5556 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-5557     TCGA-BA-5559     TCGA-BA-6869     TCGA-BA-6870 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BA-6871     TCGA-BA-6872     TCGA-BA-6873     TCGA-BB-4217 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4723     TCGA-CN-4725     TCGA-CN-4726     TCGA-CN-4727 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4728     TCGA-CN-4729     TCGA-CN-4730     TCGA-CN-4731 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4733     TCGA-CN-4734     TCGA-CN-4735     TCGA-CN-4736 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4737     TCGA-CN-4738     TCGA-CN-4739     TCGA-CN-4740 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-4741     TCGA-CN-4742     TCGA-CN-5355     TCGA-CN-5356 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5358     TCGA-CN-5359     TCGA-CN-5360     TCGA-CN-5361 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5363     TCGA-CN-5364     TCGA-CN-5365     TCGA-CN-5366 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5367     TCGA-CN-5369     TCGA-CN-5370     TCGA-CN-5373 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-5374     TCGA-CN-6010     TCGA-CN-6011     TCGA-CN-6012 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6013     TCGA-CN-6016     TCGA-CN-6017     TCGA-CN-6018 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6019     TCGA-CN-6020     TCGA-CN-6021     TCGA-CN-6022 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6023     TCGA-CN-6024     TCGA-CN-6988     TCGA-CN-6989 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6992     TCGA-CN-6994     TCGA-CN-6995     TCGA-CN-6996 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CN-6997     TCGA-CN-6998     TCGA-CQ-5323     TCGA-CQ-5324 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5325     TCGA-CQ-5326     TCGA-CQ-5327     TCGA-CQ-5329 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-5330     TCGA-CQ-5331     TCGA-CQ-5332     TCGA-CQ-5334 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6218     TCGA-CQ-6219     TCGA-CQ-6220     TCGA-CQ-6221 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6222     TCGA-CQ-6224     TCGA-CQ-6225     TCGA-CQ-6227 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CQ-6228     TCGA-CQ-6229     TCGA-CQ-7065     TCGA-CQ-7068 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5430     TCGA-CV-5431     TCGA-CV-5432     TCGA-CV-5434 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5439     TCGA-CV-5440     TCGA-CV-5441     TCGA-CV-5442 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5443     TCGA-CV-5444     TCGA-CV-5966     TCGA-CV-5970 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5971     TCGA-CV-5973     TCGA-CV-5976     TCGA-CV-5977 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-5978     TCGA-CV-5979     TCGA-CV-6003     TCGA-CV-6433 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6436     TCGA-CV-6441     TCGA-CV-6933     TCGA-CV-6934 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6935     TCGA-CV-6936     TCGA-CV-6937     TCGA-CV-6938 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6939     TCGA-CV-6940     TCGA-CV-6941     TCGA-CV-6942 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6943     TCGA-CV-6945     TCGA-CV-6948     TCGA-CV-6950 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6951     TCGA-CV-6952     TCGA-CV-6953     TCGA-CV-6954 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6955     TCGA-CV-6956     TCGA-CV-6959     TCGA-CV-6960 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-6961     TCGA-CV-6962     TCGA-CV-7089     TCGA-CV-7090 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7091     TCGA-CV-7097     TCGA-CV-7099     TCGA-CV-7100 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7101     TCGA-CV-7102     TCGA-CV-7103     TCGA-CV-7104 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7177     TCGA-CV-7178     TCGA-CV-7180     TCGA-CV-7183 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7235     TCGA-CV-7236     TCGA-CV-7238     TCGA-CV-7242 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7243     TCGA-CV-7245     TCGA-CV-7247     TCGA-CV-7248 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7250     TCGA-CV-7252     TCGA-CV-7253     TCGA-CV-7254 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7255     TCGA-CV-7261     TCGA-CV-7263     TCGA-CV-7406 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7407     TCGA-CV-7410     TCGA-CV-7411     TCGA-CV-7413 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7414     TCGA-CV-7415     TCGA-CV-7416     TCGA-CV-7418 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7421     TCGA-CV-7422     TCGA-CV-7423     TCGA-CV-7424 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7425     TCGA-CV-7427     TCGA-CV-7429     TCGA-CV-7430 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7432     TCGA-CV-7433     TCGA-CV-7434     TCGA-CV-7435 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CV-7437     TCGA-CV-7438     TCGA-CV-7440     TCGA-CX-7085 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-CX-7086     TCGA-CX-7219     TCGA-D6-6515     TCGA-D6-6516 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6517     TCGA-D6-6823     TCGA-D6-6824     TCGA-D6-6825 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-D6-6826     TCGA-D6-6827     TCGA-DQ-7591     TCGA-DQ-7592 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-IQ-7630     TCGA-IQ-7632 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" 
D17V5, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            2            115
  CLUS_2            2             91
  CLUS_3            0             89
D17V6, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            1             96
  CLUS_2            1             83
  CLUS_3            2            116
D17V7, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            0             89
  CLUS_2            2            117
  CLUS_3            2             94
D17V8, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            2            111
  CLUS_3            2            182
D17V9, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            1             73
  CLUS_2            1            105
  CLUS_3            2             86
D17V10, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            1             80
  CLUS_3            1             75
  CLUS_4            2            104

Clustering(18) Variable = EP300 MUTATION ANALYSIS
D18V1, multiclass
D18V2, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             8              92
  CLUS_2             7              97
  CLUS_3            10              92
D18V3, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             7              66
  CLUS_2             3              49
  CLUS_3             1              26
  CLUS_4             3              53
D18V4, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             8              70
  CLUS_3             0              18
D18V5, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             5             112
  CLUS_2             5              88
  CLUS_3            14              75
D18V6, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             4              93
  CLUS_2            14              70
  CLUS_3             6             112
D18V7, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10              79
  CLUS_2             9             110
  CLUS_3             5              91
D18V8, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             6             107
  CLUS_3            18             166
D18V9, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1            10              64
  CLUS_2             7              99
  CLUS_3             6              82
D18V10, multiclass
        clus
vv       EP300 MUTATED EP300 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3              78
  CLUS_3            13              63
  CLUS_4             7              99

Clustering(19) Variable = RHOA MUTATION ANALYSIS
D19V1, multiclass
D19V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             99
  CLUS_2            0            104
  CLUS_3            3             99
D19V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             73
  CLUS_2            1             51
  CLUS_3            0             27
  CLUS_4            2             54
D19V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            109
  CLUS_2            0             78
  CLUS_3            0             18
D19V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0            117
  CLUS_2            2             91
  CLUS_3            2             87
D19V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             94
  CLUS_2            1             83
  CLUS_3            0            118
D19V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             87
  CLUS_2            0            119
  CLUS_3            2             94
D19V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0              7
  CLUS_2            3            110
  CLUS_3            1            183
D19V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             73
  CLUS_2            0            106
  CLUS_3            3             85
D19V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0              5
  CLUS_2            0             81
  CLUS_3            1             75
  CLUS_4            3            103

Clustering(20) Variable = HLA-A MUTATION ANALYSIS
D20V1, multiclass
D20V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3              97
  CLUS_2             2             102
  CLUS_3             4              98
D20V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              51
  CLUS_3             0              27
  CLUS_4             2              54
D20V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             3             109
  CLUS_2             2              76
  CLUS_3             0              18
D20V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             115
  CLUS_2             1              92
  CLUS_3             6              83
D20V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              95
  CLUS_2             6              78
  CLUS_3             1             117
D20V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4              85
  CLUS_2             3             116
  CLUS_3             2              94
D20V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2             111
  CLUS_3             7             177
D20V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             5              69
  CLUS_2             3             103
  CLUS_3             1              87
D20V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2              79
  CLUS_3             5              71
  CLUS_4             2             104

Clustering(21) Variable = CTCF MUTATION ANALYSIS
D21V1, multiclass
D21V2, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6             94
  CLUS_2            1            103
  CLUS_3            4             98
D21V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             71
  CLUS_2            4             48
  CLUS_3            0             27
  CLUS_4            2             54
D21V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6            106
  CLUS_2            2             76
  CLUS_3            0             18
D21V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3            114
  CLUS_2            2             91
  CLUS_3            4             85
D21V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             95
  CLUS_2            4             80
  CLUS_3            3            115
D21V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4             85
  CLUS_2            4            115
  CLUS_3            3             93
D21V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            0              7
  CLUS_2            5            108
  CLUS_3            6            178
D21V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4             70
  CLUS_2            3            103
  CLUS_3            3             85
D21V10, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3             78
  CLUS_3            4             72
  CLUS_4            3            103

Clustering(22) Variable = RB1 MUTATION ANALYSIS
D22V1, multiclass
D22V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            99
  CLUS_2           8            96
  CLUS_3           1           101
D22V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            73
  CLUS_2           2            50
  CLUS_3           0            27
  CLUS_4           2            54
D22V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3           109
  CLUS_2           0            78
  CLUS_3           1            17
D22V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           8           109
  CLUS_2           1            92
  CLUS_3           0            89
D22V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            96
  CLUS_2           0            84
  CLUS_3           8           110
D22V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            89
  CLUS_2           7           112
  CLUS_3           3            93
D22V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0             7
  CLUS_2           4           109
  CLUS_3           6           178
D22V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            73
  CLUS_2           6           100
  CLUS_3           2            86
D22V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0             5
  CLUS_2           6            75
  CLUS_3           0            76
  CLUS_4           3           103

Clustering(23) Variable = TGFBR2 MUTATION ANALYSIS
D23V1, multiclass
D23V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               97
  CLUS_2              2              102
  CLUS_3              5               97
D23V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              1               51
  CLUS_3              0               27
  CLUS_4              4               52
D23V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5              107
  CLUS_2              3               75
  CLUS_3              0               18
D23V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2              115
  CLUS_2              3               90
  CLUS_3              5               84
D23V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4               93
  CLUS_2              3               81
  CLUS_3              3              115
D23V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               86
  CLUS_2              3              116
  CLUS_3              4               92
D23V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              4              109
  CLUS_3              6              178
D23V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               71
  CLUS_2              1              105
  CLUS_3              5               83
D23V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              1               80
  CLUS_3              4               72
  CLUS_4              4              102

Clustering(24) Variable = CSMD3 MUTATION ANALYSIS
D24V1, multiclass
D24V2, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            26              74
  CLUS_2            32              72
  CLUS_3            12              90
D24V3, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            18              55
  CLUS_2            18              34
  CLUS_3             7              20
  CLUS_4             5              51
D24V4, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            26              86
  CLUS_2            20              58
  CLUS_3             2              16
D24V5, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            43              74
  CLUS_2             9              84
  CLUS_3            18              71
D24V6, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             9              88
  CLUS_2            15              69
  CLUS_3            46              72
D24V7, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            22              67
  CLUS_2            38              81
  CLUS_3            10              86
D24V8, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             3               4
  CLUS_2            14              99
  CLUS_3            53             131
D24V9, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            16              58
  CLUS_2            34              72
  CLUS_3             7              81
D24V10, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             2               3
  CLUS_2            27              54
  CLUS_3            15              61
  CLUS_4            13              93

Clustering(25) Variable = NECAB1 MUTATION ANALYSIS
D25V1, multiclass
D25V2, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2               98
  CLUS_2              2              102
  CLUS_3              2              100
D25V3, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              0               52
  CLUS_3              0               27
  CLUS_4              1               55
D25V4, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              2               76
  CLUS_3              0               18
D25V5, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2              115
  CLUS_2              0               93
  CLUS_3              4               85
D25V6, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              0               97
  CLUS_2              4               80
  CLUS_3              2              116
D25V7, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2               87
  CLUS_2              3              116
  CLUS_3              1               95
D25V8, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1              112
  CLUS_3              5              179
D25V9, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              2               72
  CLUS_2              3              103
  CLUS_3              1               87
D25V10, multiclass
        clus
vv       NECAB1 MUTATED NECAB1 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2               79
  CLUS_3              3               73
  CLUS_4              1              105

Clustering(26) Variable = KRTAP1-5 MUTATION ANALYSIS
D26V1, multiclass
D26V2, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                1                 99
  CLUS_2                1                103
  CLUS_3                1                101
D26V3, multiclass
D26V4, multiclass
D26V5, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                115
  CLUS_2                1                 92
  CLUS_3                0                 89
D26V6, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                0                 97
  CLUS_2                1                 83
  CLUS_3                2                116
D26V7, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                0                119
  CLUS_3                0                 96
D26V8, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                1                112
  CLUS_3                2                182
D26V9, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                 72
  CLUS_2                1                105
  CLUS_3                0                 88
D26V10, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                1                 80
  CLUS_3                0                 76
  CLUS_4                2                104

Clustering(27) Variable = MAPK1 MUTATION ANALYSIS
D27V1, multiclass
D27V2, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              98
  CLUS_2             1             103
  CLUS_3             1             101
D27V3, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             0              56
D27V4, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             2              76
  CLUS_3             0              18
D27V5, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             1              92
  CLUS_3             2              87
D27V6, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             2              82
  CLUS_3             1             117
D27V7, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             1             118
  CLUS_3             1              95
D27V8, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2             111
  CLUS_3             2             182
D27V9, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             1             105
  CLUS_3             1              87
D27V10, multiclass
        clus
vv       MAPK1 MUTATED MAPK1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1              80
  CLUS_3             2              74
  CLUS_4             1             105

Clustering(28) Variable = PLSCR1 MUTATION ANALYSIS
D28V1, multiclass
D28V2, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              2               98
  CLUS_2              3              101
  CLUS_3              0              102
D28V3, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1               51
  CLUS_3              0               27
  CLUS_4              1               55
D28V4, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              2              110
  CLUS_2              1               77
  CLUS_3              0               18
D28V5, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1              116
  CLUS_2              3               90
  CLUS_3              1               88
D28V6, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              3               94
  CLUS_2              1               83
  CLUS_3              1              117
D28V7, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1               88
  CLUS_2              4              115
  CLUS_3              0               96
D28V8, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              3              110
  CLUS_3              2              182
D28V9, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              1               73
  CLUS_2              3              103
  CLUS_3              1               87
D28V10, multiclass
        clus
vv       PLSCR1 MUTATED PLSCR1 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              1               80
  CLUS_3              1               75
  CLUS_4              3              103

Clustering(29) Variable = CNPY3 MUTATION ANALYSIS
D29V1, multiclass
D29V2, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             0             100
  CLUS_2             1             103
  CLUS_3             2             100
D29V3, multiclass
[1] "Remove cluster labels:" "CNPY3 MUTATED"         
clus
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              2             206 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6021      TCGA-CN-6022 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6023      TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6992      TCGA-CN-6994      TCGA-CN-6995      TCGA-CN-6996 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6997      TCGA-CN-6998      TCGA-CQ-5323      TCGA-CQ-5324 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5325      TCGA-CQ-5326      TCGA-CQ-5327      TCGA-CQ-5329 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5330      TCGA-CQ-5331      TCGA-CQ-5332      TCGA-CQ-5334 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6218      TCGA-CQ-6219      TCGA-CQ-6220      TCGA-CQ-6221 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6222      TCGA-CQ-6225      TCGA-CQ-6227      TCGA-CQ-6228 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6229      TCGA-CQ-7065      TCGA-CQ-7068      TCGA-CV-5430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5431      TCGA-CV-5432      TCGA-CV-5434      TCGA-CV-5436 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5439      TCGA-CV-5440      TCGA-CV-5441      TCGA-CV-5442 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5443      TCGA-CV-5444      TCGA-CV-5966      TCGA-CV-5970 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5971      TCGA-CV-5973      TCGA-CV-5976      TCGA-CV-5977 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5978      TCGA-CV-5979      TCGA-CV-6003      TCGA-CV-6433 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6436      TCGA-CV-6441      TCGA-CV-6933      TCGA-CV-6934 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6935      TCGA-CV-6936      TCGA-CV-6937      TCGA-CV-6938 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6939      TCGA-CV-6940      TCGA-CV-6941      TCGA-CV-6942 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6943      TCGA-CV-6945      TCGA-CV-6948      TCGA-CV-6950 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6951      TCGA-CV-6952      TCGA-CV-6953      TCGA-CV-6954 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6955      TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6961      TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7091      TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7100      TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7104      TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7183      TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7242      TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7248      TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7254      TCGA-CV-7255      TCGA-CV-7263      TCGA-CV-7406 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411      TCGA-CV-7413 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416      TCGA-CV-7418 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423      TCGA-CV-7424 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429      TCGA-CV-7430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434      TCGA-CV-7435 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440      TCGA-CX-7085 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515      TCGA-D6-6516 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824      TCGA-D6-6825 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591      TCGA-DQ-7592 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-IQ-7630      TCGA-IQ-7632 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
D29V4, multiclass
[1] "Remove cluster labels:" "CNPY3 MUTATED"         
clus
  CNPY3 MUTATED CNPY3 WILD-TYPE 
              2             206 
     TCGA-BA-4074      TCGA-BA-4078      TCGA-BA-5149      TCGA-BA-5151 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5152      TCGA-BA-5153      TCGA-BA-5555      TCGA-BA-5556 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-5557      TCGA-BA-5559      TCGA-BA-6869      TCGA-BA-6870 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-BA-6871      TCGA-BA-6872      TCGA-BA-6873      TCGA-BB-4217 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4723      TCGA-CN-4725      TCGA-CN-4726      TCGA-CN-4727 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4728      TCGA-CN-4729      TCGA-CN-4730      TCGA-CN-4731 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4733      TCGA-CN-4734      TCGA-CN-4735      TCGA-CN-4736 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4737      TCGA-CN-4738      TCGA-CN-4739      TCGA-CN-4740 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-4741      TCGA-CN-4742      TCGA-CN-5355      TCGA-CN-5356 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5358      TCGA-CN-5359      TCGA-CN-5360      TCGA-CN-5361 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5363      TCGA-CN-5364      TCGA-CN-5365      TCGA-CN-5366 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5367      TCGA-CN-5369      TCGA-CN-5370      TCGA-CN-5373 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-5374      TCGA-CN-6010      TCGA-CN-6011      TCGA-CN-6012 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6013      TCGA-CN-6016      TCGA-CN-6017      TCGA-CN-6018 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6019      TCGA-CN-6020      TCGA-CN-6021      TCGA-CN-6022 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6023      TCGA-CN-6024      TCGA-CN-6988      TCGA-CN-6989 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6992      TCGA-CN-6994      TCGA-CN-6995      TCGA-CN-6996 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CN-6997      TCGA-CN-6998      TCGA-CQ-5323      TCGA-CQ-5324 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5325      TCGA-CQ-5326      TCGA-CQ-5327      TCGA-CQ-5329 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-5330      TCGA-CQ-5331      TCGA-CQ-5332      TCGA-CQ-5334 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6218      TCGA-CQ-6219      TCGA-CQ-6220      TCGA-CQ-6221 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6222      TCGA-CQ-6225      TCGA-CQ-6227      TCGA-CQ-6228 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CQ-6229      TCGA-CQ-7065      TCGA-CQ-7068      TCGA-CV-5430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5431      TCGA-CV-5432      TCGA-CV-5434      TCGA-CV-5436 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5439      TCGA-CV-5440      TCGA-CV-5441      TCGA-CV-5442 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5443      TCGA-CV-5444      TCGA-CV-5966      TCGA-CV-5970 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5971      TCGA-CV-5973      TCGA-CV-5976      TCGA-CV-5977 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-5978      TCGA-CV-5979      TCGA-CV-6003      TCGA-CV-6433 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6436      TCGA-CV-6441      TCGA-CV-6933      TCGA-CV-6934 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6935      TCGA-CV-6936      TCGA-CV-6937      TCGA-CV-6938 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6939      TCGA-CV-6940      TCGA-CV-6941      TCGA-CV-6942 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6943      TCGA-CV-6945      TCGA-CV-6948      TCGA-CV-6950 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6951      TCGA-CV-6952      TCGA-CV-6953      TCGA-CV-6954 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6955      TCGA-CV-6956      TCGA-CV-6959      TCGA-CV-6960 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-6961      TCGA-CV-6962      TCGA-CV-7089      TCGA-CV-7090 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7091      TCGA-CV-7095      TCGA-CV-7097      TCGA-CV-7099 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7100      TCGA-CV-7101      TCGA-CV-7102      TCGA-CV-7103 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7104      TCGA-CV-7177      TCGA-CV-7178      TCGA-CV-7180 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7183      TCGA-CV-7235      TCGA-CV-7236      TCGA-CV-7238 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7242      TCGA-CV-7243      TCGA-CV-7245      TCGA-CV-7247 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7248      TCGA-CV-7250      TCGA-CV-7252      TCGA-CV-7253 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7254      TCGA-CV-7255      TCGA-CV-7263      TCGA-CV-7406 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7407      TCGA-CV-7410      TCGA-CV-7411      TCGA-CV-7413 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7414      TCGA-CV-7415      TCGA-CV-7416      TCGA-CV-7418 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7421      TCGA-CV-7422      TCGA-CV-7423      TCGA-CV-7424 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7425      TCGA-CV-7427      TCGA-CV-7429      TCGA-CV-7430 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7432      TCGA-CV-7433      TCGA-CV-7434      TCGA-CV-7435 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CV-7437      TCGA-CV-7438      TCGA-CV-7440      TCGA-CX-7085 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-CX-7086      TCGA-CX-7219      TCGA-D6-6515      TCGA-D6-6516 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6517      TCGA-D6-6823      TCGA-D6-6824      TCGA-D6-6825 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-D6-6826      TCGA-D6-6827      TCGA-DQ-7591      TCGA-DQ-7592 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
     TCGA-IQ-7630      TCGA-IQ-7632 
"CNPY3 WILD-TYPE" "CNPY3 WILD-TYPE" 
D29V5, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             2              91
  CLUS_3             0              89
D29V6, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             0              84
  CLUS_3             1             117
D29V7, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             0              89
  CLUS_2             1             118
  CLUS_3             2              94
D29V8, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2             111
  CLUS_3             1             183
D29V9, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             0              74
  CLUS_2             1             105
  CLUS_3             2              86
D29V10, multiclass
        clus
vv       CNPY3 MUTATED CNPY3 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1              80
  CLUS_3             0              76
  CLUS_4             2             104

Clustering(30) Variable = EPB41L3 MUTATION ANALYSIS
D30V1, multiclass
D30V2, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               5                95
  CLUS_2               8                96
  CLUS_3               3                99
D30V3, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               1                72
  CLUS_2               3                49
  CLUS_3               2                25
  CLUS_4               4                52
D30V4, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               8               104
  CLUS_2               0                78
  CLUS_3               2                16
D30V5, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1              11               106
  CLUS_2               2                91
  CLUS_3               3                86
D30V6, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               3                94
  CLUS_2               1                83
  CLUS_3              12               106
D30V7, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               3                86
  CLUS_2              10               109
  CLUS_3               3                93
D30V8, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               3               110
  CLUS_3              13               171
D30V9, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               3                71
  CLUS_2               9                97
  CLUS_3               2                86
D30V10, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                73
  CLUS_3               3                73
  CLUS_4               3               103

Clustering(31) Variable = RAC1 MUTATION ANALYSIS
D31V1, multiclass
D31V2, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             97
  CLUS_2            3            101
  CLUS_3            3             99
D31V3, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             51
  CLUS_3            0             27
  CLUS_4            1             55
D31V4, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2            110
  CLUS_2            1             77
  CLUS_3            1             17
D31V5, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3            114
  CLUS_2            1             92
  CLUS_3            5             84
D31V6, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            1             96
  CLUS_2            5             79
  CLUS_3            3            115
D31V7, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            6            113
  CLUS_3            1             95
D31V8, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1            112
  CLUS_3            8            176
D31V9, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            3             71
  CLUS_2            3            103
  CLUS_3            1             87
D31V10, multiclass
        clus
vv       RAC1 MUTATED RAC1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            2             79
  CLUS_3            4             72
  CLUS_4            1            105

Clustering(32) Variable = CUL3 MUTATION ANALYSIS
D32V1, multiclass
D32V2, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             98
  CLUS_2            6             98
  CLUS_3            2            100
D32V3, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            3             49
  CLUS_3            0             27
  CLUS_4            2             54
D32V4, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            2             76
  CLUS_3            1             17
D32V5, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            5            112
  CLUS_2            4             89
  CLUS_3            1             88
D32V6, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            3             94
  CLUS_2            2             82
  CLUS_3            5            113
D32V7, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             87
  CLUS_2            5            114
  CLUS_3            3             93
D32V8, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            6            107
  CLUS_3            4            180
D32V9, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            2             72
  CLUS_2            4            102
  CLUS_3            2             86
D32V10, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            2             79
  CLUS_3            1             75
  CLUS_4            5            101

Clustering(33) Variable = TRPV4 MUTATION ANALYSIS
D33V1, multiclass
D33V2, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             1              99
  CLUS_2             2             102
  CLUS_3             4              98
D33V3, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              51
  CLUS_3             1              26
  CLUS_4             1              55
D33V4, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              75
  CLUS_3             1              17
D33V5, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             1              92
  CLUS_3             3              86
D33V6, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             5              79
  CLUS_3             1             117
D33V7, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             115
  CLUS_3             1              95
D33V8, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1             112
  CLUS_3             6             178
D33V9, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             4             102
  CLUS_3             2              86
D33V10, multiclass
        clus
vv       TRPV4 MUTATED TRPV4 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2              79
  CLUS_3             4              72
  CLUS_4             1             105

Clustering(34) Variable = PRB2 MUTATION ANALYSIS
D34V1, multiclass
D34V2, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             98
  CLUS_2            7             97
  CLUS_3            1            101
D34V3, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            3             49
  CLUS_3            1             26
  CLUS_4            2             54
D34V4, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            5            107
  CLUS_2            3             75
  CLUS_3            0             18
D34V5, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            5            112
  CLUS_2            2             91
  CLUS_3            3             86
D34V6, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1             96
  CLUS_2            3             81
  CLUS_3            6            112
D34V7, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            3             86
  CLUS_2            5            114
  CLUS_3            2             94
D34V8, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            2            111
  CLUS_3            7            177
D34V9, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            2             72
  CLUS_2            6            100
  CLUS_3            1             87
D34V10, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  CLUS_1            1              4
  CLUS_2            4             77
  CLUS_3            2             74
  CLUS_4            2            104

Clustering(35) Variable = PRB1 MUTATION ANALYSIS
D35V1, multiclass
D35V2, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3             97
  CLUS_2            3            101
  CLUS_3            1            101
D35V3, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             51
  CLUS_3            0             27
  CLUS_4            0             56
D35V4, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            1            111
  CLUS_2            2             76
  CLUS_3            0             18
D35V5, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2            115
  CLUS_2            3             90
  CLUS_3            2             87
D35V6, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            2             95
  CLUS_2            1             83
  CLUS_3            4            114
D35V7, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            4             85
  CLUS_2            3            116
  CLUS_3            0             96
D35V8, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            3            110
  CLUS_3            4            180
D35V9, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3             71
  CLUS_2            3            103
  CLUS_3            0             88
D35V10, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            1             80
  CLUS_3            2             74
  CLUS_4            3            103

Clustering(36) Variable = WHSC1 MUTATION ANALYSIS
D36V1, multiclass
D36V2, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             6              94
  CLUS_2             3             101
  CLUS_3             1             101
D36V3, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             3              49
  CLUS_3             0              27
  CLUS_4             0              56
D36V4, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             3              75
  CLUS_3             0              18
D36V5, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             5             112
  CLUS_2             3              90
  CLUS_3             2              87
D36V6, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             2              82
  CLUS_3             5             113
D36V7, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             7             112
  CLUS_3             2              94
D36V8, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             4             109
  CLUS_3             6             178
D36V9, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             7              99
  CLUS_3             1              87
D36V10, multiclass
        clus
vv       WHSC1 MUTATED WHSC1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3              78
  CLUS_3             3              73
  CLUS_4             3             103

Clustering(37) Variable = STEAP4 MUTATION ANALYSIS
D37V1, multiclass
D37V2, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              2               98
  CLUS_2              7               97
  CLUS_3              1              101
D37V3, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              4               48
  CLUS_3              0               27
  CLUS_4              1               55
D37V4, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              3              109
  CLUS_2              2               76
  CLUS_3              1               17
D37V5, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              6              111
  CLUS_2              4               89
  CLUS_3              0               89
D37V6, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              4               93
  CLUS_2              0               84
  CLUS_3              6              112
D37V7, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0               89
  CLUS_2              6              113
  CLUS_3              4               92
D37V8, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              4              109
  CLUS_3              6              178
D37V9, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0               74
  CLUS_2              6              100
  CLUS_3              4               84
D37V10, multiclass
        clus
vv       STEAP4 MUTATED STEAP4 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              5               76
  CLUS_3              0               76
  CLUS_4              5              101

Clustering(38) Variable = HIST1H1B MUTATION ANALYSIS
D38V1, multiclass
D38V2, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                0                100
  CLUS_2                3                101
  CLUS_3                4                 98
D38V3, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 72
  CLUS_2                2                 50
  CLUS_3                1                 26
  CLUS_4                2                 54
D38V4, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                109
  CLUS_2                3                 75
  CLUS_3                0                 18
D38V5, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                115
  CLUS_2                2                 91
  CLUS_3                3                 86
D38V6, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 95
  CLUS_2                3                 81
  CLUS_3                2                116
D38V7, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                 86
  CLUS_2                3                116
  CLUS_3                1                 95
D38V8, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                1                112
  CLUS_3                5                179
D38V9, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 72
  CLUS_2                2                104
  CLUS_3                3                 85
D38V10, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                1                 80
  CLUS_3                3                 73
  CLUS_4                2                104

Clustering(39) Variable = KCNA3 MUTATION ANALYSIS
D39V1, multiclass
D39V2, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             0             100
  CLUS_2             5              99
  CLUS_3             3              99
D39V3, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              51
  CLUS_3             0              27
  CLUS_4             1              55
D39V4, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             1             111
  CLUS_2             2              76
  CLUS_3             2              16
D39V5, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             4             113
  CLUS_2             1              92
  CLUS_3             3              86
D39V6, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             1              96
  CLUS_2             3              81
  CLUS_3             4             114
D39V7, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             2              87
  CLUS_2             4             115
  CLUS_3             2              94
D39V8, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1             112
  CLUS_3             7             177
D39V9, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             1              73
  CLUS_2             4             102
  CLUS_3             1              87
D39V10, multiclass
        clus
vv       KCNA3 MUTATED KCNA3 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3              78
  CLUS_3             2              74
  CLUS_4             1             105

Clustering(40) Variable = EPDR1 MUTATION ANALYSIS
D40V1, multiclass
D40V2, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             2              98
  CLUS_2             2             102
  CLUS_3             2             100
D40V3, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1              51
  CLUS_3             0              27
  CLUS_4             3              53
D40V4, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             4             108
  CLUS_2             1              77
  CLUS_3             0              18
D40V5, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             3             114
  CLUS_2             3              90
  CLUS_3             0              89
D40V6, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             3              94
  CLUS_2             1              83
  CLUS_3             2             116
D40V7, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             1              88
  CLUS_2             3             116
  CLUS_3             2              94
D40V8, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2             111
  CLUS_3             4             180
D40V9, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             2             104
  CLUS_3             2              86
D40V10, multiclass
        clus
vv       EPDR1 MUTATED EPDR1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3              78
  CLUS_3             1              75
  CLUS_4             2             104

Clustering(41) Variable = SLC26A7 MUTATION ANALYSIS
D41V1, multiclass
D41V2, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               4                96
  CLUS_2               2               102
  CLUS_3               2               100
D41V3, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               1                51
  CLUS_3               1                26
  CLUS_4               0                56
D41V4, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1               111
  CLUS_2               2                76
  CLUS_3               1                17
D41V5, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2               115
  CLUS_2               1                92
  CLUS_3               5                84
D41V6, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                96
  CLUS_2               4                80
  CLUS_3               3               115
D41V7, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                87
  CLUS_2               4               115
  CLUS_3               2                94
D41V8, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               2               111
  CLUS_3               6               178
D41V9, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                72
  CLUS_2               3               103
  CLUS_3               2                86
D41V10, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               2                79
  CLUS_3               3                73
  CLUS_4               2               104

Clustering(42) Variable = OR8D4 MUTATION ANALYSIS
D42V1, multiclass
D42V2, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              98
  CLUS_2             1             103
  CLUS_3             3              99
D42V3, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             2              50
  CLUS_3             1              26
  CLUS_4             1              55
D42V4, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2             110
  CLUS_2             4              74
  CLUS_3             0              18
D42V5, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             1             116
  CLUS_2             2              91
  CLUS_3             3              86
D42V6, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             2              82
  CLUS_3             2             116
D42V7, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             3              86
  CLUS_2             1             118
  CLUS_3             2              94
D42V8, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3             110
  CLUS_3             3             181
D42V9, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             3              71
  CLUS_2             1             105
  CLUS_3             1              87
D42V10, multiclass
        clus
vv       OR8D4 MUTATED OR8D4 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0              81
  CLUS_3             3              73
  CLUS_4             2             104

Clustering(43) Variable = POU4F2 MUTATION ANALYSIS
D43V1, multiclass
D43V2, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              3               97
  CLUS_2              2              102
  CLUS_3              2              100
D43V3, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              1               51
  CLUS_3              0               27
  CLUS_4              0               56
D43V4, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              1              111
  CLUS_2              3               75
  CLUS_3              0               18
D43V5, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              3              114
  CLUS_2              1               92
  CLUS_3              3               86
D43V6, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              1               96
  CLUS_2              2               82
  CLUS_3              4              114
D43V7, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              4               85
  CLUS_2              2              117
  CLUS_3              1               95
D43V8, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2              111
  CLUS_3              5              179
D43V9, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              1               73
  CLUS_2              5              101
  CLUS_3              1               87
D43V10, multiclass
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2               79
  CLUS_3              4               72
  CLUS_4              1              105

Clustering(44) Variable = FCRL4 MUTATION ANALYSIS
D44V1, multiclass
D44V2, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             3              97
  CLUS_2             7              97
  CLUS_3             3              99
D44V3, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             4              48
  CLUS_3             1              26
  CLUS_4             2              54
D44V4, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             6             106
  CLUS_2             4              74
  CLUS_3             1              17
D44V5, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             7             110
  CLUS_2             2              91
  CLUS_3             4              85
D44V6, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             2              82
  CLUS_3             9             109
D44V7, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             4              85
  CLUS_2             7             112
  CLUS_3             2              94
D44V8, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             4             109
  CLUS_3             9             175
D44V9, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              72
  CLUS_2             7              99
  CLUS_3             3              85
D44V10, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             4              77
  CLUS_3             5              71
  CLUS_4             3             103

Clustering(45) Variable = TXK MUTATION ANALYSIS
D45V1, multiclass
D45V2, multiclass
        clus
vv       TXK MUTATED TXK WILD-TYPE
  CLUS_1           1            99
  CLUS_2           2           102
  CLUS_3           0           102
D45V3, multiclass
[1] "Remove cluster labels:" "TXK MUTATED"           
clus
  TXK MUTATED TXK WILD-TYPE 
            2           206 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4733    TCGA-CN-4734 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738    TCGA-CN-4739 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4740    TCGA-CN-4742    TCGA-CN-5355    TCGA-CN-5356    TCGA-CN-5358 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361    TCGA-CN-5363    TCGA-CN-5364 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367    TCGA-CN-5369    TCGA-CN-5370 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010    TCGA-CN-6011    TCGA-CN-6012 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017    TCGA-CN-6018    TCGA-CN-6019 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022    TCGA-CN-6023    TCGA-CN-6024 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992    TCGA-CN-6994    TCGA-CN-6995 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998    TCGA-CQ-5323    TCGA-CQ-5324 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327    TCGA-CQ-5329    TCGA-CQ-5330 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334    TCGA-CQ-6218    TCGA-CQ-6219 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222    TCGA-CQ-6224    TCGA-CQ-6225 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229    TCGA-CQ-7065    TCGA-CQ-7068 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432    TCGA-CV-5434    TCGA-CV-5436 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441    TCGA-CV-5442    TCGA-CV-5443 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970    TCGA-CV-5971    TCGA-CV-5973 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978    TCGA-CV-5979    TCGA-CV-6003 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441    TCGA-CV-6933    TCGA-CV-6934 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937    TCGA-CV-6938    TCGA-CV-6939 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942    TCGA-CV-6943    TCGA-CV-6945 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951    TCGA-CV-6952    TCGA-CV-6953 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956    TCGA-CV-6959    TCGA-CV-6960 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089    TCGA-CV-7090    TCGA-CV-7091 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7099    TCGA-CV-7100    TCGA-CV-7101 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177    TCGA-CV-7178 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236    TCGA-CV-7238 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247    TCGA-CV-7248 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254    TCGA-CV-7255 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407    TCGA-CV-7410 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415    TCGA-CV-7416 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423    TCGA-CV-7424 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430    TCGA-CV-7432 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437    TCGA-CV-7438 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219    TCGA-D6-6515 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824    TCGA-D6-6825 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592    TCGA-IQ-7630 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-IQ-7632 
"TXK WILD-TYPE" 
D45V4, multiclass
[1] "Remove cluster labels:" "TXK MUTATED"           
clus
  TXK MUTATED TXK WILD-TYPE 
            2           206 
   TCGA-BA-4074    TCGA-BA-4078    TCGA-BA-5149    TCGA-BA-5151    TCGA-BA-5152 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-5153    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557    TCGA-BA-5559 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-6869    TCGA-BA-6870    TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BB-4217    TCGA-CN-4723    TCGA-CN-4725    TCGA-CN-4726    TCGA-CN-4727 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4728    TCGA-CN-4729    TCGA-CN-4730    TCGA-CN-4733    TCGA-CN-4734 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4735    TCGA-CN-4736    TCGA-CN-4737    TCGA-CN-4738    TCGA-CN-4739 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4740    TCGA-CN-4742    TCGA-CN-5355    TCGA-CN-5356    TCGA-CN-5358 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-5359    TCGA-CN-5360    TCGA-CN-5361    TCGA-CN-5363    TCGA-CN-5364 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-5365    TCGA-CN-5366    TCGA-CN-5367    TCGA-CN-5369    TCGA-CN-5370 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-5373    TCGA-CN-5374    TCGA-CN-6010    TCGA-CN-6011    TCGA-CN-6012 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6013    TCGA-CN-6016    TCGA-CN-6017    TCGA-CN-6018    TCGA-CN-6019 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6020    TCGA-CN-6021    TCGA-CN-6022    TCGA-CN-6023    TCGA-CN-6024 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6988    TCGA-CN-6989    TCGA-CN-6992    TCGA-CN-6994    TCGA-CN-6995 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6996    TCGA-CN-6997    TCGA-CN-6998    TCGA-CQ-5323    TCGA-CQ-5324 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5325    TCGA-CQ-5326    TCGA-CQ-5327    TCGA-CQ-5329    TCGA-CQ-5330 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5331    TCGA-CQ-5332    TCGA-CQ-5334    TCGA-CQ-6218    TCGA-CQ-6219 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6220    TCGA-CQ-6221    TCGA-CQ-6222    TCGA-CQ-6224    TCGA-CQ-6225 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6227    TCGA-CQ-6228    TCGA-CQ-6229    TCGA-CQ-7065    TCGA-CQ-7068 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5430    TCGA-CV-5431    TCGA-CV-5432    TCGA-CV-5434    TCGA-CV-5436 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5439    TCGA-CV-5440    TCGA-CV-5441    TCGA-CV-5442    TCGA-CV-5443 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5444    TCGA-CV-5966    TCGA-CV-5970    TCGA-CV-5971    TCGA-CV-5973 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5976    TCGA-CV-5977    TCGA-CV-5978    TCGA-CV-5979    TCGA-CV-6003 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6433    TCGA-CV-6436    TCGA-CV-6441    TCGA-CV-6933    TCGA-CV-6934 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6935    TCGA-CV-6936    TCGA-CV-6937    TCGA-CV-6938    TCGA-CV-6939 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6940    TCGA-CV-6941    TCGA-CV-6942    TCGA-CV-6943    TCGA-CV-6945 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6948    TCGA-CV-6950    TCGA-CV-6951    TCGA-CV-6952    TCGA-CV-6953 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6954    TCGA-CV-6955    TCGA-CV-6956    TCGA-CV-6959    TCGA-CV-6960 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6961    TCGA-CV-6962    TCGA-CV-7089    TCGA-CV-7090    TCGA-CV-7091 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7095    TCGA-CV-7097    TCGA-CV-7099    TCGA-CV-7100    TCGA-CV-7101 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7102    TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177    TCGA-CV-7178 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7180    TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236    TCGA-CV-7238 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7242    TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247    TCGA-CV-7248 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7250    TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254    TCGA-CV-7255 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7261    TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407    TCGA-CV-7410 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415    TCGA-CV-7416 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423    TCGA-CV-7424 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430    TCGA-CV-7432 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437    TCGA-CV-7438 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7440    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219    TCGA-D6-6515 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824    TCGA-D6-6825 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-7591    TCGA-DQ-7592    TCGA-IQ-7630 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-IQ-7632 
"TXK WILD-TYPE" 
D45V5, multiclass
        clus
vv       TXK MUTATED TXK WILD-TYPE
  CLUS_1           2           115
  CLUS_2           1            92
  CLUS_3           0            89
D45V6, multiclass
        clus
vv       TXK MUTATED TXK WILD-TYPE
  CLUS_1           1            96
  CLUS_2           0            84
  CLUS_3           2           116
D45V7, multiclass
        clus
vv       TXK MUTATED TXK WILD-TYPE
  CLUS_1           0            89
  CLUS_2           3           116
  CLUS_3           0            96
D45V8, multiclass
        clus
vv       TXK MUTATED TXK WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1           112
  CLUS_3           2           182
D45V9, multiclass
[1] "Remove cluster labels:" "TXK MUTATED"           
clus
  TXK MUTATED TXK WILD-TYPE 
            1           267 
   TCGA-BA-5149    TCGA-BA-5152    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-5558    TCGA-BA-5559    TCGA-BA-6868    TCGA-BA-6869    TCGA-BA-6870 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873    TCGA-BA-7269    TCGA-BB-4217 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BB-4227    TCGA-BB-7861    TCGA-BB-7862    TCGA-BB-7863    TCGA-BB-7864 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BB-7866    TCGA-BB-7870    TCGA-BB-7871    TCGA-BB-7872    TCGA-CN-4733 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4738    TCGA-CN-4739    TCGA-CN-4742    TCGA-CN-5358    TCGA-CN-5370 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6010    TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6017    TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6022    TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6992    TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6998    TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5327    TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5334    TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6222    TCGA-CQ-6223    TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6228    TCGA-CQ-6229    TCGA-CQ-7065    TCGA-CQ-7067    TCGA-CQ-7068 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-5243    TCGA-CR-5247    TCGA-CR-5248    TCGA-CR-5249    TCGA-CR-5250 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6467    TCGA-CR-6470    TCGA-CR-6471    TCGA-CR-6472    TCGA-CR-6473 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6474    TCGA-CR-6477    TCGA-CR-6478    TCGA-CR-6480    TCGA-CR-6481 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6482    TCGA-CR-6484    TCGA-CR-6487    TCGA-CR-6488    TCGA-CR-6491 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6492    TCGA-CR-6493    TCGA-CR-7364    TCGA-CR-7365    TCGA-CR-7367 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7368    TCGA-CR-7369    TCGA-CR-7370    TCGA-CR-7371    TCGA-CR-7372 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7373    TCGA-CR-7374    TCGA-CR-7376    TCGA-CR-7377    TCGA-CR-7379 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7380    TCGA-CR-7382    TCGA-CR-7383    TCGA-CR-7385    TCGA-CR-7386 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7388    TCGA-CR-7389    TCGA-CR-7390    TCGA-CR-7391    TCGA-CR-7392 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7393    TCGA-CR-7394    TCGA-CR-7395    TCGA-CR-7397    TCGA-CR-7398 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7399    TCGA-CR-7401    TCGA-CR-7402    TCGA-CR-7404    TCGA-CV-5430 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5431    TCGA-CV-5432    TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5440    TCGA-CV-5441    TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5966    TCGA-CV-5970    TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5977    TCGA-CV-5978    TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6436    TCGA-CV-6441    TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6936    TCGA-CV-6937    TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6941    TCGA-CV-6942    TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6950    TCGA-CV-6951    TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6955    TCGA-CV-6956    TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6962    TCGA-CV-7089    TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7097    TCGA-CV-7099    TCGA-CV-7100    TCGA-CV-7101    TCGA-CV-7102 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177    TCGA-CV-7178    TCGA-CV-7180 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236    TCGA-CV-7238    TCGA-CV-7242 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247    TCGA-CV-7248    TCGA-CV-7250 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254    TCGA-CV-7255    TCGA-CV-7261 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407    TCGA-CV-7409    TCGA-CV-7410 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415    TCGA-CV-7416 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423    TCGA-CV-7424 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430    TCGA-CV-7432 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437    TCGA-CV-7438 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7440    TCGA-CX-7082    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-5624    TCGA-DQ-5625 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-DQ-5629    TCGA-DQ-5630    TCGA-DQ-5631    TCGA-DQ-7588    TCGA-DQ-7589 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-DQ-7590    TCGA-DQ-7591    TCGA-DQ-7592    TCGA-DQ-7594    TCGA-DQ-7595 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-F7-7848    TCGA-H7-7774    TCGA-HD-7229    TCGA-HD-7753    TCGA-HD-7754 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-HD-7831    TCGA-HD-7832    TCGA-HD-7917    TCGA-HL-7533    TCGA-IQ-7630 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-IQ-7631    TCGA-IQ-7632 
"TXK WILD-TYPE" "TXK WILD-TYPE" 
D45V10, multiclass
[1] "Remove cluster labels:" "TXK MUTATED"           
clus
  TXK MUTATED TXK WILD-TYPE 
            1           267 
   TCGA-BA-5149    TCGA-BA-5152    TCGA-BA-5555    TCGA-BA-5556    TCGA-BA-5557 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-5558    TCGA-BA-5559    TCGA-BA-6868    TCGA-BA-6869    TCGA-BA-6870 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BA-6871    TCGA-BA-6872    TCGA-BA-6873    TCGA-BA-7269    TCGA-BB-4217 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BB-4227    TCGA-BB-7861    TCGA-BB-7862    TCGA-BB-7863    TCGA-BB-7864 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-BB-7866    TCGA-BB-7870    TCGA-BB-7871    TCGA-BB-7872    TCGA-CN-4733 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-4738    TCGA-CN-4739    TCGA-CN-4742    TCGA-CN-5358    TCGA-CN-5370 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6010    TCGA-CN-6011    TCGA-CN-6012    TCGA-CN-6013    TCGA-CN-6016 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6017    TCGA-CN-6018    TCGA-CN-6019    TCGA-CN-6020    TCGA-CN-6021 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6022    TCGA-CN-6023    TCGA-CN-6024    TCGA-CN-6988    TCGA-CN-6989 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6992    TCGA-CN-6994    TCGA-CN-6995    TCGA-CN-6996    TCGA-CN-6997 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CN-6998    TCGA-CQ-5323    TCGA-CQ-5324    TCGA-CQ-5325    TCGA-CQ-5326 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5327    TCGA-CQ-5329    TCGA-CQ-5330    TCGA-CQ-5331    TCGA-CQ-5332 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-5334    TCGA-CQ-6218    TCGA-CQ-6219    TCGA-CQ-6220    TCGA-CQ-6221 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6222    TCGA-CQ-6223    TCGA-CQ-6224    TCGA-CQ-6225    TCGA-CQ-6227 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CQ-6228    TCGA-CQ-6229    TCGA-CQ-7065    TCGA-CQ-7067    TCGA-CQ-7068 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-5243    TCGA-CR-5247    TCGA-CR-5248    TCGA-CR-5249    TCGA-CR-5250 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6467    TCGA-CR-6470    TCGA-CR-6471    TCGA-CR-6472    TCGA-CR-6473 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6474    TCGA-CR-6477    TCGA-CR-6478    TCGA-CR-6480    TCGA-CR-6481 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6482    TCGA-CR-6484    TCGA-CR-6487    TCGA-CR-6488    TCGA-CR-6491 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-6492    TCGA-CR-6493    TCGA-CR-7364    TCGA-CR-7365    TCGA-CR-7367 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7368    TCGA-CR-7369    TCGA-CR-7370    TCGA-CR-7371    TCGA-CR-7372 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7373    TCGA-CR-7374    TCGA-CR-7376    TCGA-CR-7377    TCGA-CR-7379 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7380    TCGA-CR-7382    TCGA-CR-7383    TCGA-CR-7385    TCGA-CR-7386 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7388    TCGA-CR-7389    TCGA-CR-7390    TCGA-CR-7391    TCGA-CR-7392 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7393    TCGA-CR-7394    TCGA-CR-7395    TCGA-CR-7397    TCGA-CR-7398 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CR-7399    TCGA-CR-7401    TCGA-CR-7402    TCGA-CR-7404    TCGA-CV-5430 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5431    TCGA-CV-5432    TCGA-CV-5434    TCGA-CV-5436    TCGA-CV-5439 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5440    TCGA-CV-5441    TCGA-CV-5442    TCGA-CV-5443    TCGA-CV-5444 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5966    TCGA-CV-5970    TCGA-CV-5971    TCGA-CV-5973    TCGA-CV-5976 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-5977    TCGA-CV-5978    TCGA-CV-5979    TCGA-CV-6003    TCGA-CV-6433 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6436    TCGA-CV-6441    TCGA-CV-6933    TCGA-CV-6934    TCGA-CV-6935 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6936    TCGA-CV-6937    TCGA-CV-6938    TCGA-CV-6939    TCGA-CV-6940 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6941    TCGA-CV-6942    TCGA-CV-6943    TCGA-CV-6945    TCGA-CV-6948 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6950    TCGA-CV-6951    TCGA-CV-6952    TCGA-CV-6953    TCGA-CV-6954 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6955    TCGA-CV-6956    TCGA-CV-6959    TCGA-CV-6960    TCGA-CV-6961 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-6962    TCGA-CV-7089    TCGA-CV-7090    TCGA-CV-7091    TCGA-CV-7095 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7097    TCGA-CV-7099    TCGA-CV-7100    TCGA-CV-7101    TCGA-CV-7102 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7103    TCGA-CV-7104    TCGA-CV-7177    TCGA-CV-7178    TCGA-CV-7180 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7183    TCGA-CV-7235    TCGA-CV-7236    TCGA-CV-7238    TCGA-CV-7242 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7243    TCGA-CV-7245    TCGA-CV-7247    TCGA-CV-7248    TCGA-CV-7250 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7252    TCGA-CV-7253    TCGA-CV-7254    TCGA-CV-7255    TCGA-CV-7261 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7263    TCGA-CV-7406    TCGA-CV-7407    TCGA-CV-7409    TCGA-CV-7410 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7411    TCGA-CV-7413    TCGA-CV-7414    TCGA-CV-7415    TCGA-CV-7416 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7418    TCGA-CV-7421    TCGA-CV-7422    TCGA-CV-7423    TCGA-CV-7424 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7425    TCGA-CV-7427    TCGA-CV-7429    TCGA-CV-7430    TCGA-CV-7432 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7433    TCGA-CV-7434    TCGA-CV-7435    TCGA-CV-7437    TCGA-CV-7438 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-CV-7440    TCGA-CX-7082    TCGA-CX-7085    TCGA-CX-7086    TCGA-CX-7219 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6515    TCGA-D6-6516    TCGA-D6-6517    TCGA-D6-6823    TCGA-D6-6824 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-D6-6825    TCGA-D6-6826    TCGA-D6-6827    TCGA-DQ-5624    TCGA-DQ-5625 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-DQ-5629    TCGA-DQ-5630    TCGA-DQ-5631    TCGA-DQ-7588    TCGA-DQ-7589 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-DQ-7590    TCGA-DQ-7591    TCGA-DQ-7592    TCGA-DQ-7594    TCGA-DQ-7595 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-F7-7848    TCGA-H7-7774    TCGA-HD-7229    TCGA-HD-7753    TCGA-HD-7754 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-HD-7831    TCGA-HD-7832    TCGA-HD-7917    TCGA-HL-7533    TCGA-IQ-7630 
"TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" "TXK WILD-TYPE" 
   TCGA-IQ-7631    TCGA-IQ-7632 
"TXK WILD-TYPE" "TXK WILD-TYPE" 
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V5                            V6 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V7                            V8 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V9                           V10 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
