
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/KICH-TP/3472422/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/KICH-TP/3537611/KICH-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KICH-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KICH-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=66, in cluster file=66, common to both=66
[1] "Reduce the number of clustering variables from 80 to 57."
[1] 57 66
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
                5                61 
      3P GAIN CNV 3P GAIN WILD-TYPE 
                5                61 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                5                61 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
                5                61 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               18                48 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               18                48 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               17                49 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               17                49 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
                5                61 
      5P GAIN CNV 5P GAIN WILD-TYPE 
                5                61 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
                5                61 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
                5                61 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
               18                48 
      7P GAIN CNV 7P GAIN WILD-TYPE 
               18                48 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               18                48 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
               18                48 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               13                53 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               13                53 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               14                52 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               14                52 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
                8                58 
      9P GAIN CNV 9P GAIN WILD-TYPE 
                8                58 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                8                58 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
                8                58 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                13                 53 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                13                 53 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                14                 52 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                14                 52 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
                14                 52 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                14                 52 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                13                 53 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                13                 53 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                16                 50 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                16                 50 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                14                 52 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                14                 52 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                15                 51 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                15                 51 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                15                 51 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                15                 51 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                14                 52 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                14                 52 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                13                 53 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                13                 53 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                11                 55 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                11                 55 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                 9                 57 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                 9                 57 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
                14                 52 
      20P GAIN CNV 20P GAIN WILD-TYPE 
                14                 52 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                15                 51 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                15                 51 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 3                 63 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                 3                 63 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                15                 51 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                15                 51 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                9                57 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                9                57 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
               48                18 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               48                18 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               47                19 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               47                19 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
               43                23 
      2P LOSS CNV 2P LOSS WILD-TYPE 
               43                23 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               43                23 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               43                23 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
                7                59 
      3P LOSS CNV 3P LOSS WILD-TYPE 
                7                59 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
                6                60 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
                6                60 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
                7                59 
      5P LOSS CNV 5P LOSS WILD-TYPE 
                7                59 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
                7                59 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
                7                59 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               47                19 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               47                19 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               47                19 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               47                19 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
                9                57 
      8P LOSS CNV 8P LOSS WILD-TYPE 
                9                57 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                8                58 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
                8                58 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
                8                58 
      9P LOSS CNV 9P LOSS WILD-TYPE 
                8                58 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
                8                58 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
                8                58 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                44                 22 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                44                 22 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                44                 22 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                44                 22 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                 5                 61 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                 5                 61 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                 5                 61 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                 5                 61 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                37                 29 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
                37                 29 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                 3                 63 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                 3                 63 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                 4                 62 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                 4                 62 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
                45                 21 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                45                 21 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                45                 21 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                45                 21 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                 5                 61 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                 5                 61 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                 7                 59 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                 7                 59 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                28                 38 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                28                 38 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                 5                 61 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                 5                 61 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               33                33 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               33                33 
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 66 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 66 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 3p gain
D1V1, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           5                42
  CLUS_3           0                14
D1V2, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           1                17
  CLUS_2           3                32
  CLUS_3           1                12
D1V3, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           1                18
  CLUS_2           2                20
  CLUS_3           1                14
  CLUS_4           1                 9
D1V4, multiclass
D1V5, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           3                17
  CLUS_2           0                24
  CLUS_3           2                20
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV          2    3
  3P GAIN WILD-TYPE    7   54
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           3                54
D1V7, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           0                28
  CLUS_2           2                19
  CLUS_3           3                14
D1V8, multiclass

Clustering(2) Variable = 3q gain
D2V1, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           5                42
  CLUS_3           0                14
D2V2, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           1                17
  CLUS_2           3                32
  CLUS_3           1                12
D2V3, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           1                18
  CLUS_2           2                20
  CLUS_3           1                14
  CLUS_4           1                 9
D2V4, multiclass
D2V5, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           3                17
  CLUS_2           0                24
  CLUS_3           2                20
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV          2    3
  3Q GAIN WILD-TYPE    7   54
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           3                54
D2V7, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           0                28
  CLUS_2           2                19
  CLUS_3           3                14
D2V8, multiclass

Clustering(3) Variable = 4p gain
D3V1, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2          13                34
  CLUS_3           5                 9
D3V2, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           5                13
  CLUS_2           9                26
  CLUS_3           4                 9
D3V3, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3                16
  CLUS_2          14                 8
  CLUS_3           1                14
  CLUS_4           0                10
D3V4, multiclass
D3V5, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           4                16
  CLUS_2           5                19
  CLUS_3           9                13
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          0   18
  4P GAIN WILD-TYPE    9   39
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           0                 9
  CLUS_2          18                39
D3V7, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           7                21
  CLUS_2           7                14
  CLUS_3           4                13
D3V8, multiclass

Clustering(4) Variable = 4q gain
D4V1, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2          12                35
  CLUS_3           5                 9
D4V2, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           5                13
  CLUS_2           8                27
  CLUS_3           4                 9
D4V3, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           3                16
  CLUS_2          13                 9
  CLUS_3           1                14
  CLUS_4           0                10
D4V4, multiclass
D4V5, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           3                17
  CLUS_2           5                19
  CLUS_3           9                13
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          0   17
  4Q GAIN WILD-TYPE    9   40
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                 9
  CLUS_2          17                40
D4V7, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           7                21
  CLUS_2           7                14
  CLUS_3           3                14
D4V8, multiclass

Clustering(5) Variable = 5p gain
D5V1, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           3                44
  CLUS_3           2                12
D5V2, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           1                17
  CLUS_2           3                32
  CLUS_3           1                12
D5V3, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           1                18
  CLUS_2           2                20
  CLUS_3           1                14
  CLUS_4           1                 9
D5V4, multiclass
D5V5, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           2                18
  CLUS_2           2                22
  CLUS_3           1                21
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV          2    3
  5P GAIN WILD-TYPE    7   54
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           3                54
D5V7, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           2                26
  CLUS_2           1                20
  CLUS_3           2                15
D5V8, multiclass

Clustering(6) Variable = 5q gain
D6V1, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           3                44
  CLUS_3           2                12
D6V2, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           1                17
  CLUS_2           3                32
  CLUS_3           1                12
D6V3, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           1                18
  CLUS_2           2                20
  CLUS_3           1                14
  CLUS_4           1                 9
D6V4, multiclass
D6V5, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           2                18
  CLUS_2           2                22
  CLUS_3           1                21
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV          2    3
  5Q GAIN WILD-TYPE    7   54
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           3                54
D6V7, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           2                26
  CLUS_2           1                20
  CLUS_3           2                15
D6V8, multiclass

Clustering(7) Variable = 7p gain
D7V1, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2          13                34
  CLUS_3           5                 9
D7V2, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           5                13
  CLUS_2           9                26
  CLUS_3           4                 9
D7V3, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           3                16
  CLUS_2          12                10
  CLUS_3           2                13
  CLUS_4           1                 9
D7V4, multiclass
D7V5, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           5                15
  CLUS_2           4                20
  CLUS_3           9                13
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV          2   16
  7P GAIN WILD-TYPE    7   41
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          16                41
D7V7, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           6                22
  CLUS_2           8                13
  CLUS_3           4                13
D7V8, multiclass

Clustering(8) Variable = 7q gain
D8V1, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2          13                34
  CLUS_3           5                 9
D8V2, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           5                13
  CLUS_2           9                26
  CLUS_3           4                 9
D8V3, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           3                16
  CLUS_2          12                10
  CLUS_3           2                13
  CLUS_4           1                 9
D8V4, multiclass
D8V5, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           5                15
  CLUS_2           4                20
  CLUS_3           9                13
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV          2   16
  7Q GAIN WILD-TYPE    7   41
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          16                41
D8V7, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           6                22
  CLUS_2           8                13
  CLUS_3           4                13
D8V8, multiclass

Clustering(9) Variable = 8p gain
D9V1, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2          12                35
  CLUS_3           1                13
D9V2, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           3                15
  CLUS_2           6                29
  CLUS_3           4                 9
D9V3, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           1                18
  CLUS_2           9                13
  CLUS_3           2                13
  CLUS_4           1                 9
D9V4, multiclass
D9V5, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           6                14
  CLUS_2           2                22
  CLUS_3           5                17
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV          2   11
  8P GAIN WILD-TYPE    7   46
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          11                46
D9V7, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2           4                17
  CLUS_3           6                11
D9V8, multiclass

Clustering(10) Variable = 8q gain
D10V1, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2          13                34
  CLUS_3           1                13
D10V2, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           3                15
  CLUS_2           7                28
  CLUS_3           4                 9
D10V3, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           1                18
  CLUS_2          10                12
  CLUS_3           2                13
  CLUS_4           1                 9
D10V4, multiclass
D10V5, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           6                14
  CLUS_2           3                21
  CLUS_3           5                17
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV          2   12
  8Q GAIN WILD-TYPE    7   45
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          12                45
D10V7, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1           4                24
  CLUS_2           4                17
  CLUS_3           6                11
D10V8, multiclass

Clustering(11) Variable = 9p gain
D11V1, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           6                41
  CLUS_3           2                12
D11V2, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           3                15
  CLUS_2           4                31
  CLUS_3           1                12
D11V3, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           3                16
  CLUS_2           3                19
  CLUS_3           1                14
  CLUS_4           1                 9
D11V4, multiclass
D11V5, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           3                17
  CLUS_2           2                22
  CLUS_3           3                19
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          2    6
  9P GAIN WILD-TYPE    7   51
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           6                51
D11V7, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           2                26
  CLUS_2           3                18
  CLUS_3           3                14
D11V8, multiclass

Clustering(12) Variable = 9q gain
D12V1, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           6                41
  CLUS_3           2                12
D12V2, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           3                15
  CLUS_2           4                31
  CLUS_3           1                12
D12V3, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           3                16
  CLUS_2           3                19
  CLUS_3           1                14
  CLUS_4           1                 9
D12V4, multiclass
D12V5, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           3                17
  CLUS_2           2                22
  CLUS_3           3                19
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          2    6
  9Q GAIN WILD-TYPE    7   51
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           6                51
D12V7, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                26
  CLUS_2           3                18
  CLUS_3           3                14
D12V8, multiclass

Clustering(13) Variable = 11p gain
D13V1, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            9                 38
  CLUS_3            4                 10
D13V2, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            3                 15
  CLUS_2            6                 29
  CLUS_3            4                  9
D13V3, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            1                 18
  CLUS_2           11                 11
  CLUS_3            1                 14
  CLUS_4            0                 10
D13V4, multiclass
D13V5, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            4                 16
  CLUS_2            3                 21
  CLUS_3            6                 16
D13V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          0   13
  11P GAIN WILD-TYPE    9   44
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            0                  9
  CLUS_2           13                 44
D13V7, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            5                 16
  CLUS_3            4                 13
D13V8, multiclass

Clustering(14) Variable = 11q gain
D14V1, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           10                 37
  CLUS_3            4                 10
D14V2, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            3                 15
  CLUS_2            7                 28
  CLUS_3            4                  9
D14V3, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            1                 18
  CLUS_2           12                 10
  CLUS_3            1                 14
  CLUS_4            0                 10
D14V4, multiclass
D14V5, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            4                 16
  CLUS_2            4                 20
  CLUS_3            6                 16
D14V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          0   14
  11Q GAIN WILD-TYPE    9   43
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            0                  9
  CLUS_2           14                 43
D14V7, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                 23
  CLUS_2            5                 16
  CLUS_3            4                 13
D14V8, multiclass

Clustering(15) Variable = 12p gain
D15V1, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           11                 36
  CLUS_3            3                 11
D15V2, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            7                 28
  CLUS_3            3                 10
D15V3, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            2                 17
  CLUS_2           10                 12
  CLUS_3            1                 14
  CLUS_4            1                  9
D15V4, multiclass
D15V5, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            4                 16
  CLUS_2            4                 20
  CLUS_3            6                 16
D15V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV          2   12
  12P GAIN WILD-TYPE    7   45
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            2                  7
  CLUS_2           12                 45
D15V7, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            5                 16
  CLUS_3            3                 14
D15V8, multiclass

Clustering(16) Variable = 12q gain
D16V1, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           10                 37
  CLUS_3            3                 11
D16V2, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            6                 29
  CLUS_3            3                 10
D16V3, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            3                 16
  CLUS_2            9                 13
  CLUS_3            0                 15
  CLUS_4            1                  9
D16V4, multiclass
D16V5, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            3                 17
  CLUS_2            5                 19
  CLUS_3            5                 17
D16V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV          1   12
  12Q GAIN WILD-TYPE    8   45
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            1                  8
  CLUS_2           12                 45
D16V7, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            7                 21
  CLUS_2            4                 17
  CLUS_3            2                 15
D16V8, multiclass

Clustering(17) Variable = 14q gain
D17V1, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           11                 36
  CLUS_3            5                  9
D17V2, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            5                 13
  CLUS_2            8                 27
  CLUS_3            3                 10
D17V3, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            3                 16
  CLUS_2           12                 10
  CLUS_3            1                 14
  CLUS_4            0                 10
D17V4, multiclass
D17V5, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            3                 17
  CLUS_2            5                 19
  CLUS_3            8                 14
D17V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          1   15
  14Q GAIN WILD-TYPE    8   42
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            1                  8
  CLUS_2           15                 42
D17V7, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            7                 14
  CLUS_3            3                 14
D17V8, multiclass

Clustering(18) Variable = 15q gain
D18V1, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            9                 38
  CLUS_3            5                  9
D18V2, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            5                 13
  CLUS_2            6                 29
  CLUS_3            3                 10
D18V3, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            2                 17
  CLUS_2           11                 11
  CLUS_3            1                 14
  CLUS_4            0                 10
D18V4, multiclass
D18V5, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            4                 16
  CLUS_2            3                 21
  CLUS_3            7                 15
D18V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          1   13
  15Q GAIN WILD-TYPE    8   44
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            1                  8
  CLUS_2           13                 44
D18V7, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            3                 25
  CLUS_2            7                 14
  CLUS_3            4                 13
D18V8, multiclass

Clustering(19) Variable = 16p gain
D19V1, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           11                 36
  CLUS_3            4                 10
D19V2, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            8                 27
  CLUS_3            3                 10
D19V3, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            3                 16
  CLUS_2           12                 10
  CLUS_3            0                 15
  CLUS_4            0                 10
D19V4, multiclass
D19V5, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            2                 18
  CLUS_2            5                 19
  CLUS_3            8                 14
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          0   15
  16P GAIN WILD-TYPE    9   42
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            0                  9
  CLUS_2           15                 42
D19V7, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            7                 21
  CLUS_2            6                 15
  CLUS_3            2                 15
D19V8, multiclass

Clustering(20) Variable = 16q gain
D20V1, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           11                 36
  CLUS_3            4                 10
D20V2, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            8                 27
  CLUS_3            3                 10
D20V3, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            3                 16
  CLUS_2           12                 10
  CLUS_3            0                 15
  CLUS_4            0                 10
D20V4, multiclass
D20V5, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            2                 18
  CLUS_2            5                 19
  CLUS_3            8                 14
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          0   15
  16Q GAIN WILD-TYPE    9   42
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                  9
  CLUS_2           15                 42
D20V7, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            7                 21
  CLUS_2            6                 15
  CLUS_3            2                 15
D20V8, multiclass

Clustering(21) Variable = 18p gain
D21V1, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           12                 35
  CLUS_3            2                 12
D21V2, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            6                 29
  CLUS_3            4                  9
D21V3, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                 18
  CLUS_2           10                 12
  CLUS_3            1                 14
  CLUS_4            2                  8
D21V4, multiclass
D21V5, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            5                 15
  CLUS_2            4                 20
  CLUS_3            5                 17
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV          3   11
  18P GAIN WILD-TYPE    6   46
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            3                  6
  CLUS_2           11                 46
D21V7, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            3                 18
  CLUS_3            5                 12
D21V8, multiclass

Clustering(22) Variable = 18q gain
D22V1, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           11                 36
  CLUS_3            2                 12
D22V2, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            6                 29
  CLUS_3            3                 10
D22V3, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            1                 18
  CLUS_2           10                 12
  CLUS_3            1                 14
  CLUS_4            1                  9
D22V4, multiclass
D22V5, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            4                 16
  CLUS_2            4                 20
  CLUS_3            5                 17
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          2   11
  18Q GAIN WILD-TYPE    7   46
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            2                  7
  CLUS_2           11                 46
D22V7, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            3                 18
  CLUS_3            4                 13
D22V8, multiclass

Clustering(23) Variable = 19p gain
D23V1, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            9                 38
  CLUS_3            2                 12
D23V2, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            2                 16
  CLUS_2            7                 28
  CLUS_3            2                 11
D23V3, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            2                 17
  CLUS_2            9                 13
  CLUS_3            0                 15
  CLUS_4            0                 10
D23V4, multiclass
D23V5, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            2                 18
  CLUS_2            3                 21
  CLUS_3            6                 16
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          0   11
  19P GAIN WILD-TYPE    9   46
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            0                  9
  CLUS_2           11                 46
D23V7, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            5                 16
  CLUS_3            2                 15
D23V8, multiclass

Clustering(24) Variable = 19q gain
D24V1, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            8                 39
  CLUS_3            1                 13
D24V2, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            2                 16
  CLUS_2            6                 29
  CLUS_3            1                 12
D24V3, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            1                 18
  CLUS_2            8                 14
  CLUS_3            0                 15
  CLUS_4            0                 10
D24V4, multiclass
D24V5, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            2                 18
  CLUS_2            2                 22
  CLUS_3            5                 17
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV          0    9
  19Q GAIN WILD-TYPE    9   48
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            0                  9
  CLUS_2            9                 48
D24V7, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            3                 25
  CLUS_2            4                 17
  CLUS_3            2                 15
D24V8, multiclass

Clustering(25) Variable = 20p gain
D25V1, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            9                 38
  CLUS_3            5                  9
D25V2, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            6                 29
  CLUS_3            4                  9
D25V3, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            3                 16
  CLUS_2           10                 12
  CLUS_3            0                 15
  CLUS_4            1                  9
D25V4, multiclass
D25V5, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            3                 17
  CLUS_2            3                 21
  CLUS_3            8                 14
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV          1   13
  20P GAIN WILD-TYPE    8   44
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            1                  8
  CLUS_2           13                 44
D25V7, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            7                 14
  CLUS_3            3                 14
D25V8, multiclass

Clustering(26) Variable = 20q gain
D26V1, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2           10                 37
  CLUS_3            5                  9
D26V2, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            4                 14
  CLUS_2            6                 29
  CLUS_3            5                  8
D26V3, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            3                 16
  CLUS_2           10                 12
  CLUS_3            0                 15
  CLUS_4            2                  8
D26V4, multiclass
D26V5, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            4                 16
  CLUS_2            3                 21
  CLUS_3            8                 14
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV          2   13
  20Q GAIN WILD-TYPE    7   44
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            2                  7
  CLUS_2           13                 44
D26V7, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            7                 14
  CLUS_3            4                 13
D26V8, multiclass

Clustering(27) Variable = 21q gain
D27V1, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            2                 45
  CLUS_3            1                 13
D27V2, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                 18
  CLUS_2            1                 34
  CLUS_3            2                 11
D27V3, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                 19
  CLUS_2            2                 20
  CLUS_3            0                 15
  CLUS_4            1                  9
D27V4, multiclass
D27V5, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            2                 18
  CLUS_2            0                 24
  CLUS_3            1                 21
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          1    2
  21Q GAIN WILD-TYPE    8   55
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            1                  8
  CLUS_2            2                 55
D27V7, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                 28
  CLUS_2            1                 20
  CLUS_3            2                 15
D27V8, multiclass

Clustering(28) Variable = 22q gain
D28V1, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            1                  4
  CLUS_2           10                 37
  CLUS_3            4                 10
D28V2, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            5                 13
  CLUS_2            6                 29
  CLUS_3            4                  9
D28V3, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            4                 15
  CLUS_2            9                 13
  CLUS_3            1                 14
  CLUS_4            1                  9
D28V4, multiclass
D28V5, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            3                 17
  CLUS_2            5                 19
  CLUS_3            7                 15
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          2   13
  22Q GAIN WILD-TYPE    7   44
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            2                  7
  CLUS_2           13                 44
D28V7, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            7                 21
  CLUS_2            6                 15
  CLUS_3            2                 15
D28V8, multiclass

Clustering(29) Variable = Xq gain
D29V1, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           7                40
  CLUS_3           2                12
D29V2, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           2                16
  CLUS_2           5                30
  CLUS_3           2                11
D29V3, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                19
  CLUS_2           9                13
  CLUS_3           0                15
  CLUS_4           0                10
D29V4, multiclass
D29V5, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1                19
  CLUS_2           3                21
  CLUS_3           5                17
D29V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          0    9
  XQ GAIN WILD-TYPE    9   48
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           9                48
D29V7, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           4                24
  CLUS_2           4                17
  CLUS_3           1                16
D29V8, multiclass

Clustering(30) Variable = 1p loss
D30V1, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           5                 0
  CLUS_2          32                15
  CLUS_3          11                 3
D30V2, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          16                 2
  CLUS_2          29                 6
  CLUS_3           3                10
D30V3, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          19                 0
  CLUS_2          12                10
  CLUS_3          14                 1
  CLUS_4           3                 7
D30V4, multiclass
D30V5, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          11                 9
  CLUS_2          21                 3
  CLUS_3          16                 6
D30V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          2   46
  1P LOSS WILD-TYPE    7   11
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          46                11
D30V7, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          24                 4
  CLUS_2          16                 5
  CLUS_3           8                 9
D30V8, multiclass

Clustering(31) Variable = 1q loss
D31V1, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           5                 0
  CLUS_2          31                16
  CLUS_3          11                 3
D31V2, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1          16                 2
  CLUS_2          28                 7
  CLUS_3           3                10
D31V3, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1          19                 0
  CLUS_2          12                10
  CLUS_3          13                 2
  CLUS_4           3                 7
D31V4, multiclass
D31V5, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1          11                 9
  CLUS_2          20                 4
  CLUS_3          16                 6
D31V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          2   45
  1Q LOSS WILD-TYPE    7   12
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          45                12
D31V7, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1          24                 4
  CLUS_2          15                 6
  CLUS_3           8                 9
D31V8, multiclass

Clustering(32) Variable = 2p loss
D32V1, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           5                 0
  CLUS_2          27                20
  CLUS_3          11                 3
D32V2, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1          16                 2
  CLUS_2          26                 9
  CLUS_3           1                12
D32V3, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1          19                 0
  CLUS_2          11                11
  CLUS_3          13                 2
  CLUS_4           0                10
D32V4, multiclass
D32V5, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           9                11
  CLUS_2          19                 5
  CLUS_3          15                 7
D32V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          1   42
  2P LOSS WILD-TYPE    8   15
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                 8
  CLUS_2          42                15
D32V7, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1          21                 7
  CLUS_2          15                 6
  CLUS_3           7                10
D32V8, multiclass

Clustering(33) Variable = 2q loss
D33V1, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           5                 0
  CLUS_2          27                20
  CLUS_3          11                 3
D33V2, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1          16                 2
  CLUS_2          26                 9
  CLUS_3           1                12
D33V3, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1          19                 0
  CLUS_2          11                11
  CLUS_3          13                 2
  CLUS_4           0                10
D33V4, multiclass
D33V5, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           9                11
  CLUS_2          19                 5
  CLUS_3          15                 7
D33V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          1   42
  2Q LOSS WILD-TYPE    8   15
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                 8
  CLUS_2          42                15
D33V7, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1          21                 7
  CLUS_2          15                 6
  CLUS_3           7                10
D33V8, multiclass

Clustering(34) Variable = 3p loss
D34V1, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           3                44
  CLUS_3           4                10
D34V2, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           2                16
  CLUS_2           4                31
  CLUS_3           1                12
D34V3, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           0                19
  CLUS_2           4                18
  CLUS_3           2                13
  CLUS_4           1                 9
D34V4, multiclass
D34V5, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           2                18
  CLUS_2           4                20
  CLUS_3           1                21
D34V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV          0    7
  3P LOSS WILD-TYPE    9   50
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           7                50
D34V7, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           5                23
  CLUS_2           1                20
  CLUS_3           1                16
D34V8, multiclass

Clustering(35) Variable = 3q loss
D35V1, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           2                45
  CLUS_3           4                10
D35V2, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           2                16
  CLUS_2           4                31
  CLUS_3           0                13
D35V3, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                19
  CLUS_2           4                18
  CLUS_3           2                13
  CLUS_4           0                10
D35V4, multiclass
D35V5, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           1                19
  CLUS_2           4                20
  CLUS_3           1                21
D35V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          0    6
  3Q LOSS WILD-TYPE    9   51
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           6                51
D35V7, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           5                23
  CLUS_2           1                20
  CLUS_3           0                17
D35V8, multiclass

Clustering(36) Variable = 5p loss
D36V1, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           7                40
  CLUS_3           0                14
D36V2, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                18
  CLUS_2           6                29
  CLUS_3           1                12
D36V3, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           1                18
  CLUS_2           6                16
  CLUS_3           0                15
  CLUS_4           0                10
D36V4, multiclass
D36V5, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           2                18
  CLUS_2           2                22
  CLUS_3           3                19
D36V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          0    7
  5P LOSS WILD-TYPE    9   50
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           7                50
D36V7, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2           3                18
  CLUS_3           2                15
D36V8, multiclass

Clustering(37) Variable = 5q loss
D37V1, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           7                40
  CLUS_3           0                14
D37V2, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                18
  CLUS_2           6                29
  CLUS_3           1                12
D37V3, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           1                18
  CLUS_2           6                16
  CLUS_3           0                15
  CLUS_4           0                10
D37V4, multiclass
D37V5, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           2                18
  CLUS_2           2                22
  CLUS_3           3                19
D37V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV          0    7
  5Q LOSS WILD-TYPE    9   50
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           7                50
D37V7, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2           3                18
  CLUS_3           2                15
D37V8, multiclass

Clustering(38) Variable = 6p loss
D38V1, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           5                 0
  CLUS_2          31                16
  CLUS_3          11                 3
D38V2, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          16                 2
  CLUS_2          28                 7
  CLUS_3           3                10
D38V3, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          19                 0
  CLUS_2          12                10
  CLUS_3          14                 1
  CLUS_4           2                 8
D38V4, multiclass
D38V5, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          11                 9
  CLUS_2          20                 4
  CLUS_3          16                 6
D38V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          2   45
  6P LOSS WILD-TYPE    7   12
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          45                12
D38V7, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          23                 5
  CLUS_2          15                 6
  CLUS_3           9                 8
D38V8, multiclass

Clustering(39) Variable = 6q loss
D39V1, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           5                 0
  CLUS_2          31                16
  CLUS_3          11                 3
D39V2, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          16                 2
  CLUS_2          28                 7
  CLUS_3           3                10
D39V3, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          19                 0
  CLUS_2          12                10
  CLUS_3          14                 1
  CLUS_4           2                 8
D39V4, multiclass
D39V5, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          11                 9
  CLUS_2          20                 4
  CLUS_3          16                 6
D39V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV          2   45
  6Q LOSS WILD-TYPE    7   12
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           2                 7
  CLUS_2          45                12
D39V7, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          23                 5
  CLUS_2          15                 6
  CLUS_3           9                 8
D39V8, multiclass

Clustering(40) Variable = 8p loss
D40V1, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           0                47
  CLUS_3           9                 5
D40V2, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           5                13
  CLUS_2           4                31
  CLUS_3           0                13
D40V3, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           6                13
  CLUS_2           1                21
  CLUS_3           2                13
  CLUS_4           0                10
D40V4, multiclass
D40V5, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           1                19
  CLUS_2           6                18
  CLUS_3           2                20
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV          0    9
  8P LOSS WILD-TYPE    9   48
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           9                48
D40V7, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           8                20
  CLUS_2           1                20
  CLUS_3           0                17
D40V8, multiclass

Clustering(41) Variable = 8q loss
D41V1, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           0                47
  CLUS_3           8                 6
D41V2, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5                13
  CLUS_2           3                32
  CLUS_3           0                13
D41V3, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5                14
  CLUS_2           1                21
  CLUS_3           2                13
  CLUS_4           0                10
D41V4, multiclass
D41V5, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           1                19
  CLUS_2           5                19
  CLUS_3           2                20
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          0    8
  8Q LOSS WILD-TYPE    9   49
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2           8                49
D41V7, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           7                21
  CLUS_2           1                20
  CLUS_3           0                17
D41V8, multiclass

Clustering(42) Variable = 9p loss
D42V1, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           6                41
  CLUS_3           2                12
D42V2, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           2                16
  CLUS_2           4                31
  CLUS_3           2                11
D42V3, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           0                19
  CLUS_2           4                18
  CLUS_3           2                13
  CLUS_4           2                 8
D42V4, multiclass
D42V5, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           2                18
  CLUS_2           3                21
  CLUS_3           3                19
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV          2    6
  9P LOSS WILD-TYPE    7   51
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           6                51
D42V7, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           4                24
  CLUS_2           3                18
  CLUS_3           1                16
D42V8, multiclass

Clustering(43) Variable = 9q loss
D43V1, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           0                 5
  CLUS_2           6                41
  CLUS_3           2                12
D43V2, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           2                16
  CLUS_2           4                31
  CLUS_3           2                11
D43V3, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           0                19
  CLUS_2           4                18
  CLUS_3           2                13
  CLUS_4           2                 8
D43V4, multiclass
D43V5, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           2                18
  CLUS_2           3                21
  CLUS_3           3                19
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV          2    6
  9Q LOSS WILD-TYPE    7   51
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           2                 7
  CLUS_2           6                51
D43V7, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           4                24
  CLUS_2           3                18
  CLUS_3           1                16
D43V8, multiclass

Clustering(44) Variable = 10p loss
D44V1, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            5                  0
  CLUS_2           29                 18
  CLUS_3           10                  4
D44V2, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           16                  2
  CLUS_2           24                 11
  CLUS_3            4                  9
D44V3, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           19                  0
  CLUS_2            9                 13
  CLUS_3           13                  2
  CLUS_4            3                  7
D44V4, multiclass
D44V5, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           11                  9
  CLUS_2           18                  6
  CLUS_3           15                  7
D44V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV          3   41
  10P LOSS WILD-TYPE    6   16
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            3                  6
  CLUS_2           41                 16
D44V7, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           22                  6
  CLUS_2           14                  7
  CLUS_3            8                  9
D44V8, multiclass

Clustering(45) Variable = 10q loss
D45V1, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            5                  0
  CLUS_2           29                 18
  CLUS_3           10                  4
D45V2, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           16                  2
  CLUS_2           24                 11
  CLUS_3            4                  9
D45V3, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           19                  0
  CLUS_2            9                 13
  CLUS_3           13                  2
  CLUS_4            3                  7
D45V4, multiclass
D45V5, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           11                  9
  CLUS_2           18                  6
  CLUS_3           15                  7
D45V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV          3   41
  10Q LOSS WILD-TYPE    6   16
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            3                  6
  CLUS_2           41                 16
D45V7, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           22                  6
  CLUS_2           14                  7
  CLUS_3            8                  9
D45V8, multiclass

Clustering(46) Variable = 11p loss
D46V1, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            4                 43
  CLUS_3            1                 13
D46V2, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            2                 16
  CLUS_2            3                 32
  CLUS_3            0                 13
D46V3, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            3                 16
  CLUS_2            0                 22
  CLUS_3            2                 13
  CLUS_4            0                 10
D46V4, multiclass
D46V5, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            0                 20
  CLUS_2            4                 20
  CLUS_3            1                 21
D46V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV          0    5
  11P LOSS WILD-TYPE    9   52
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            0                  9
  CLUS_2            5                 52
D46V7, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            1                 20
  CLUS_3            0                 17
D46V8, multiclass

Clustering(47) Variable = 11q loss
D47V1, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            4                 43
  CLUS_3            1                 13
D47V2, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            2                 16
  CLUS_2            3                 32
  CLUS_3            0                 13
D47V3, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            3                 16
  CLUS_2            0                 22
  CLUS_3            2                 13
  CLUS_4            0                 10
D47V4, multiclass
D47V5, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            0                 20
  CLUS_2            4                 20
  CLUS_3            1                 21
D47V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV          0    5
  11Q LOSS WILD-TYPE    9   52
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            0                  9
  CLUS_2            5                 52
D47V7, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            1                 20
  CLUS_3            0                 17
D47V8, multiclass

Clustering(48) Variable = 13q loss
D48V1, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            5                  0
  CLUS_2           25                 22
  CLUS_3            7                  7
D48V2, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           10                  8
  CLUS_2           25                 10
  CLUS_3            2                 11
D48V3, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           14                  5
  CLUS_2           10                 12
  CLUS_3           12                  3
  CLUS_4            1                  9
D48V4, multiclass
D48V5, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           10                 10
  CLUS_2           15                  9
  CLUS_3           12                 10
D48V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV          2   35
  13Q LOSS WILD-TYPE    7   22
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            2                  7
  CLUS_2           35                 22
D48V7, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           18                 10
  CLUS_2           11                 10
  CLUS_3            8                  9
D48V8, multiclass

Clustering(49) Variable = 16p loss
D49V1, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            3                 44
  CLUS_3            0                 14
D49V2, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            0                 18
  CLUS_2            3                 32
  CLUS_3            0                 13
D49V3, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            0                 19
  CLUS_2            0                 22
  CLUS_3            3                 12
  CLUS_4            0                 10
D49V4, multiclass
D49V5, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                 19
  CLUS_2            1                 23
  CLUS_3            1                 21
D49V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV          0    3
  16P LOSS WILD-TYPE    9   54
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            0                  9
  CLUS_2            3                 54
D49V7, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            1                 20
  CLUS_3            1                 16
D49V8, multiclass

Clustering(50) Variable = 16q loss
D50V1, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            4                 43
  CLUS_3            0                 14
D50V2, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            0                 18
  CLUS_2            4                 31
  CLUS_3            0                 13
D50V3, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            0                 19
  CLUS_2            0                 22
  CLUS_3            4                 11
  CLUS_4            0                 10
D50V4, multiclass
D50V5, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            2                 18
  CLUS_2            1                 23
  CLUS_3            1                 21
D50V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV          1    3
  16Q LOSS WILD-TYPE    8   54
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            1                  8
  CLUS_2            3                 54
D50V7, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            1                 20
  CLUS_3            2                 15
D50V8, multiclass

Clustering(51) Variable = 17p loss
D51V1, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            5                  0
  CLUS_2           29                 18
  CLUS_3           11                  3
D51V2, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           16                  2
  CLUS_2           28                  7
  CLUS_3            1                 12
D51V3, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           19                  0
  CLUS_2           12                 10
  CLUS_3           14                  1
  CLUS_4            0                 10
D51V4, multiclass
D51V5, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            9                 11
  CLUS_2           20                  4
  CLUS_3           16                  6
D51V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV          1   44
  17P LOSS WILD-TYPE    8   13
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            1                  8
  CLUS_2           44                 13
D51V7, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           23                  5
  CLUS_2           15                  6
  CLUS_3            7                 10
D51V8, multiclass

Clustering(52) Variable = 17q loss
D52V1, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            5                  0
  CLUS_2           29                 18
  CLUS_3           11                  3
D52V2, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           16                  2
  CLUS_2           28                  7
  CLUS_3            1                 12
D52V3, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           19                  0
  CLUS_2           12                 10
  CLUS_3           14                  1
  CLUS_4            0                 10
D52V4, multiclass
D52V5, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            9                 11
  CLUS_2           20                  4
  CLUS_3           16                  6
D52V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          1   44
  17Q LOSS WILD-TYPE    8   13
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            1                  8
  CLUS_2           44                 13
D52V7, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           23                  5
  CLUS_2           15                  6
  CLUS_3            7                 10
D52V8, multiclass

Clustering(53) Variable = 18p loss
D53V1, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            1                  4
  CLUS_2            4                 43
  CLUS_3            0                 14
D53V2, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            0                 18
  CLUS_2            5                 30
  CLUS_3            0                 13
D53V3, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            1                 18
  CLUS_2            0                 22
  CLUS_3            4                 11
  CLUS_4            0                 10
D53V4, multiclass
D53V5, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            0                 20
  CLUS_2            4                 20
  CLUS_3            1                 21
D53V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV          0    5
  18P LOSS WILD-TYPE    9   52
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            0                  9
  CLUS_2            5                 52
D53V7, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            1                 20
  CLUS_3            0                 17
D53V8, multiclass

Clustering(54) Variable = 18q loss
D54V1, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            1                  4
  CLUS_2            6                 41
  CLUS_3            0                 14
D54V2, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            0                 18
  CLUS_2            6                 29
  CLUS_3            1                 12
D54V3, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            2                 17
  CLUS_2            0                 22
  CLUS_3            4                 11
  CLUS_4            1                  9
D54V4, multiclass
D54V5, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            1                 19
  CLUS_2            5                 19
  CLUS_3            1                 21
D54V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV          1    6
  18Q LOSS WILD-TYPE    8   51
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            1                  8
  CLUS_2            6                 51
D54V7, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            5                 23
  CLUS_2            1                 20
  CLUS_3            1                 16
D54V8, multiclass

Clustering(55) Variable = 21q loss
D55V1, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            2                  3
  CLUS_2           20                 27
  CLUS_3            6                  8
D55V2, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           11                  7
  CLUS_2           16                 19
  CLUS_3            1                 12
D55V3, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           11                  8
  CLUS_2            8                 14
  CLUS_3            7                  8
  CLUS_4            2                  8
D55V4, multiclass
D55V5, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            7                 13
  CLUS_2           12                 12
  CLUS_3            9                 13
D55V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV          3   25
  21Q LOSS WILD-TYPE    6   32
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            3                  6
  CLUS_2           25                 32
D55V7, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           15                 13
  CLUS_2            9                 12
  CLUS_3            4                 13
D55V8, multiclass

Clustering(56) Variable = 22q loss
D56V1, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            0                  5
  CLUS_2            5                 42
  CLUS_3            0                 14
D56V2, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            0                 18
  CLUS_2            5                 30
  CLUS_3            0                 13
D56V3, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            1                 18
  CLUS_2            3                 19
  CLUS_3            1                 14
  CLUS_4            0                 10
D56V4, multiclass
D56V5, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            1                 19
  CLUS_2            2                 22
  CLUS_3            2                 20
D56V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV          0    5
  22Q LOSS WILD-TYPE    9   52
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            0                  9
  CLUS_2            5                 52
D56V7, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            3                 25
  CLUS_2            1                 20
  CLUS_3            1                 16
D56V8, multiclass

Clustering(57) Variable = Xq loss
D57V1, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           3                 2
  CLUS_2          22                25
  CLUS_3           8                 6
D57V2, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1          12                 6
  CLUS_2          21                14
  CLUS_3           0                13
D57V3, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1          15                 4
  CLUS_2           8                14
  CLUS_3          10                 5
  CLUS_4           0                10
D57V4, multiclass
D57V5, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           5                15
  CLUS_2          16                 8
  CLUS_3          12                10
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          0   33
  XQ LOSS WILD-TYPE    9   24
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           0                 9
  CLUS_2          33                24
D57V7, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1          19                 9
  CLUS_2          11                10
  CLUS_3           3                14
D57V8, multiclass
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V5                            V6 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V7                            V8 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
