		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q32.1)	0 (0%)	197	NA	NA	NA	NA	7.8123e-07	0.000298	8.1257e-05	0.029	1.9049e-05	0.00703	0.3778	1	0.74057	1	0.14016	1	0.57789	1	0.075426	1
Amp Peak  2(4q12)	0 (0%)	210	NA	NA	NA	NA	0.50271	1	0.56488	1	0.39284	1	0.54272	1	0.64663	1	0.15901	1	0.44523	1	0.29974	1
Amp Peak  3(7p11.2)	0 (0%)	165	0.86379	1	0.72616	1	1.0968e-18	4.43e-16	1.0731e-12	4.26e-10	1.168e-09	4.59e-07	0.017227	1	0.00032301	0.113	0.0090489	1	0.0054655	1	0.002501	0.803
Amp Peak  4(7q32.3)	0 (0%)	143	0.7639	1	0.75539	1	8.3915e-17	3.36e-14	2.2985e-07	8.85e-05	2.5251e-05	0.00929	0.028635	1	0.020241	1	0.1297	1	0.045059	1	0.058245	1
Amp Peak  5(8q24.21)	0 (0%)	176	0.36962	1	0.16356	1	6.8684e-06	0.00256	7.7643e-07	0.000297	0.0011407	0.382	0.0018892	0.622	0.06383	1	0.025008	1	0.11988	1	0.024002	1
Amp Peak  6(10p15.1)	0 (0%)	185	0.46711	1	0.47324	1	2.6143e-09	1.02e-06	6.5171e-08	2.53e-05	0.0033469	1	0.0047341	1	0.06928	1	0.47377	1	0.077929	1	0.34028	1
Amp Peak  7(10q11.21)	0 (0%)	215	NA	NA	NA	NA	0.19976	1	0.40207	1	0.21252	1	0.17637	1	0.0060138	1	1	1	0.001029	0.347	1	1
Amp Peak  8(11q23.3)	0 (0%)	182	0.070754	1	0.019039	1	0.92156	1	0.050359	1	0.21675	1	0.23021	1	0.62544	1	0.49754	1	0.06833	1	0.75127	1
Amp Peak  9(12p13.32)	0 (0%)	186	0.86379	1	0.048602	1	1.0003e-05	0.00371	3.7791e-05	0.0138	0.013411	1	0.00095899	0.324	0.019064	1	0.033294	1	0.0019915	0.649	0.0037761	1
Amp Peak 10(12p11.22)	0 (0%)	199	1	1	0.013836	1	0.021217	1	0.04022	1	0.14154	1	0.0032945	1	0.053916	1	0.091362	1	0.0012515	0.416	0.0060023	1
Amp Peak 11(12q14.1)	0 (0%)	206	NA	NA	NA	NA	0.12167	1	0.59623	1	0.029008	1	0.32793	1	0.94072	1	0.49915	1	0.32392	1	1	1
Amp Peak 12(19p13.3)	0 (0%)	169	0.18636	1	0.40979	1	1.6926e-09	6.64e-07	6.6849e-06	0.00249	0.0045873	1	0.0029628	0.942	0.32354	1	0.41684	1	0.83771	1	0.42287	1
Amp Peak 13(19q13.2)	0 (0%)	205	0.36923	1	0.1935	1	1.0184e-06	0.000386	0.00033777	0.118	0.00026654	0.0938	0.010114	1	0.012888	1	0.0046556	1	0.75231	1	0.025107	1
Amp Peak 14(Xp22.33)	0 (0%)	205	NA	NA	NA	NA	0.0024776	0.798	0.0062945	1	0.32277	1	0.090494	1	0.40186	1	0.52466	1	0.69437	1	1	1
Amp Peak 15(Xq11.2)	0 (0%)	189	0.28205	1	0.65299	1	3.6297e-06	0.00136	1.2333e-06	0.000465	0.011838	1	0.00039659	0.137	0.08664	1	0.29878	1	0.13021	1	0.34819	1
Del Peak  1(1p36.31)	0 (0%)	137	0.0005487	0.189	5.8557e-05	0.0211	3.6942e-31	1.51e-28	2.0314e-35	8.33e-33	4.4437e-17	1.78e-14	7.501e-20	3.04e-17	1.3882e-07	5.37e-05	0.0022393	0.728	0.0019446	0.636	6.8271e-05	0.0244
Del Peak  2(1p32.3)	0 (0%)	143	0.028572	1	0.00017271	0.0611	2.8777e-37	1.18e-34	1.0037e-38	4.14e-36	2.6978e-18	1.09e-15	2.0897e-23	8.51e-21	4.5675e-11	1.8e-08	6.2897e-05	0.0226	0.00024813	0.0876	9.3736e-07	0.000356
Del Peak  3(1q43)	0 (0%)	207	NA	NA	NA	NA	0.66566	1	0.36966	1	0.20205	1	0.086077	1	0.65037	1	0.23921	1	0.20256	1	0.15245	1
Del Peak  4(2q37.3)	0 (0%)	188	0.18013	1	0.11586	1	0.0013379	0.443	5.1107e-06	0.00191	0.021793	1	0.021692	1	0.081932	1	0.1504	1	0.40079	1	0.1601	1
Del Peak  5(3p21.1)	0 (0%)	200	1	1	0.0081481	1	0.35851	1	0.02039	1	0.94019	1	0.014346	1	0.029676	1	0.015543	1	0.15284	1	0.041491	1
Del Peak  6(3q29)	0 (0%)	199	0.17504	1	0.56068	1	0.0098173	1	0.0054165	1	0.11373	1	0.073959	1	0.46441	1	0.16386	1	0.98901	1	0.55287	1
Del Peak  7(4q33)	0 (0%)	159	1	1	0.60239	1	0.00050218	0.173	0.00035792	0.124	0.031872	1	0.018551	1	0.00057268	0.196	0.2644	1	0.033148	1	0.042723	1
Del Peak  8(4q35.2)	0 (0%)	158	1	1	0.60239	1	8.1803e-05	0.0291	5.9417e-05	0.0214	0.019041	1	0.016553	1	0.0012155	0.405	0.19705	1	0.038972	1	0.025211	1
Del Peak  9(5q35.2)	0 (0%)	192	0.44623	1	0.018246	1	0.0026055	0.834	0.00055988	0.192	0.030098	1	0.0054043	1	0.011368	1	0.096286	1	0.11574	1	0.54339	1
Del Peak 10(6p24.1)	0 (0%)	199	NA	NA	NA	NA	0.13113	1	0.33992	1	0.43558	1	0.23266	1	0.5676	1	0.51479	1	0.26541	1	0.079739	1
Del Peak 11(6q24.3)	0 (0%)	187	0.047863	1	0.1935	1	0.015832	1	0.009918	1	0.26901	1	0.051936	1	0.030948	1	0.23998	1	0.03312	1	0.055399	1
Del Peak 12(8p23.2)	0 (0%)	209	1	1	0.013836	1	0.0069582	1	0.0099331	1	0.13584	1	0.35957	1	0.23764	1	0.57376	1	0.13774	1	0.5504	1
Del Peak 13(9p21.3)	0 (0%)	142	0.33256	1	0.015262	1	2.3989e-07	9.21e-05	1.2729e-05	0.00471	0.0067945	1	0.046519	1	0.4736	1	0.15866	1	0.014772	1	0.2783	1
Del Peak 14(10q26.2)	0 (0%)	150	0.17949	1	0.022012	1	1.0528e-17	4.23e-15	4.2093e-16	1.68e-13	1.0863e-13	4.32e-11	2.7961e-08	1.09e-05	1.1548e-06	0.000437	0.00076217	0.258	9.3822e-05	0.0333	0.0029287	0.934
Del Peak 15(11p15.5)	0 (0%)	172	0.64244	1	0.00074097	0.252	1.9774e-07	7.63e-05	3.0691e-09	1.2e-06	0.024797	1	0.00028252	0.0992	0.16313	1	0.57582	1	0.38857	1	0.2843	1
Del Peak 16(11q25)	0 (0%)	205	NA	NA	NA	NA	0.0018332	0.605	0.01712	1	0.1258	1	0.090494	1	0.28234	1	0.094184	1	0.53968	1	0.2703	1
Del Peak 17(12q24.11)	0 (0%)	190	1	1	0.013836	1	4.9666e-05	0.018	3.9806e-05	0.0145	0.31167	1	0.008963	1	0.029841	1	0.63513	1	0.27813	1	0.61489	1
Del Peak 18(13q14.2)	0 (0%)	155	0.1801	1	0.00061812	0.211	0.053996	1	0.01349	1	0.48244	1	0.20239	1	0.30767	1	0.7178	1	0.59372	1	0.79408	1
Del Peak 19(13q34)	0 (0%)	170	0.50769	1	0.10604	1	0.24429	1	0.11252	1	0.24232	1	0.15597	1	0.051377	1	0.47114	1	0.093566	1	0.34546	1
Del Peak 20(14q24.3)	0 (0%)	169	0.30286	1	0.1709	1	0.002355	0.761	0.040549	1	0.025302	1	0.11845	1	0.00952	1	0.022565	1	0.0011915	0.398	0.094883	1
Del Peak 21(15q21.3)	0 (0%)	193	0.83946	1	0.65273	1	0.059641	1	0.026772	1	0.0069902	1	0.24653	1	0.46766	1	0.37909	1	0.60054	1	1	1
Del Peak 22(17q25.3)	0 (0%)	205	NA	NA	NA	NA	0.020586	1	0.18012	1	0.65823	1	0.36726	1	0.238	1	0.67739	1	0.89948	1	0.37079	1
Del Peak 23(18p11.32)	0 (0%)	188	0.32144	1	0.31568	1	0.552	1	0.06058	1	0.48063	1	0.64846	1	0.65295	1	0.65341	1	0.73899	1	0.82221	1
Del Peak 24(18q23)	0 (0%)	185	0.32144	1	0.31568	1	0.91795	1	0.042894	1	0.48928	1	0.87526	1	0.70114	1	0.26315	1	0.54564	1	0.41888	1
Del Peak 25(19q13.42)	0 (0%)	104	0.03533	1	0.12707	1	4.3984e-29	1.79e-26	3.4735e-21	1.41e-18	4.8095e-11	1.89e-08	3.347e-12	1.33e-09	2.4976e-07	9.57e-05	0.052275	1	0.00032649	0.114	0.002273	0.736
Del Peak 26(22q13.31)	0 (0%)	189	0.25043	1	0.058829	1	2.211e-06	0.000831	4.7563e-05	0.0173	4.5024e-05	0.0164	0.0018946	0.622	0.21498	1	0.1775	1	0.050789	1	0.27233	1
Del Peak 27(Xp22.31)	0 (0%)	169	0.73001	1	0.018246	1	0.51694	1	0.26254	1	0.54772	1	0.092602	1	0.022488	1	0.15419	1	0.099098	1	0.52209	1
Del Peak 28(Xq21.1)	0 (0%)	190	0.73001	1	0.0010709	0.36	0.46798	1	0.025804	1	0.008376	1	0.025848	1	2.6034e-05	0.00955	0.87825	1	0.055571	1	0.66177	1
