SampleName	CN_cNMF	Methlyation_cNMF	mRNAseq_cNMF	mRNAseq_cHierarchical	miRseq_cNMF	miRseq_cHierarchical	miRseq_Mature_cNMF	miRseq_Mature_cHierarchical
TCGA-BC-4072-01	1	1	1	1	1	2	1	2
TCGA-BC-4073-01	2	1	1	1	2	1	2	1
TCGA-BC-A10Q-01	2	1	1	1	1	2	3	2
TCGA-BC-A10R-01	1	2	2	1	1	2	3	1
TCGA-BC-A10S-01	1	3	3	2	3	2	4	2
TCGA-BC-A10T-01	3	3	4	2	1	2	5	3
TCGA-BC-A10U-01	1	3	5	2	3	2	2	3
TCGA-BC-A10W-01	3	2	1	1	3	2	1	2
TCGA-BC-A10X-01	2	1	3	2	1	2	1	2
TCGA-BC-A10Y-01	3	3	4	2	2	2	6	3
TCGA-BC-A10Z-01	3	3	4	2	2	1	2	1
TCGA-BC-A110-01	2	1	NA	NA	1	2	5	2
TCGA-BC-A112-01	3	2	1	1	1	2	3	2
TCGA-BC-A216-01	1	3	1	1	3	2	4	4
TCGA-BC-A217-01	3	3	6	2	3	2	6	3
TCGA-BC-A3KF-01	3	3	4	2	3	2	4	4
TCGA-BC-A3KG-01	3	3	6	2	3	2	4	3
TCGA-BD-A2L6-01	2	3	4	2	3	2	6	3
TCGA-BD-A3EP-01	3	1	NA	NA	2	1	2	1
TCGA-BD-A3ER-01	2	2	NA	NA	1	2	5	2
TCGA-CC-5258-01	1	1	7	1	1	2	1	2
TCGA-CC-5259-01	NA	2	NA	NA	3	2	1	4
TCGA-CC-5260-01	2	1	1	1	1	2	3	2
TCGA-CC-5261-01	3	2	NA	NA	1	2	3	2
TCGA-CC-5262-01	2	1	3	2	2	1	2	1
TCGA-CC-5263-01	3	3	1	1	2	2	2	1
TCGA-CC-5264-01	3	3	1	1	3	2	3	1
TCGA-CC-A123-01	NA	2	NA	NA	1	2	1	2
TCGA-CC-A1HT-01	1	1	1	1	2	1	2	1
TCGA-CC-A3M9-01	2	1	NA	NA	1	2	1	2
TCGA-CC-A3MA-01	3	2	NA	NA	1	2	3	2
TCGA-CC-A3MB-01	3	3	8	1	1	2	6	2
TCGA-CC-A3MC-01	1	2	NA	NA	1	2	2	2
TCGA-DD-A113-01	1	2	2	1	3	2	3	3
TCGA-DD-A114-01	2	1	1	1	1	2	5	2
TCGA-DD-A115-01	3	3	4	2	2	1	2	1
TCGA-DD-A116-01	3	2	5	2	3	2	4	4
TCGA-DD-A118-01	1	2	2	1	3	2	6	3
TCGA-DD-A119-01	1	2	2	2	1	2	5	2
TCGA-DD-A11A-01	3	3	NA	NA	3	2	6	3
TCGA-DD-A11B-01	2	2	4	2	3	2	4	2
TCGA-DD-A11C-01	3	3	4	2	3	2	6	3
TCGA-DD-A11D-01	2	3	4	2	3	2	6	3
TCGA-DD-A1E9-01	1	1	NA	NA	NA	NA	NA	NA
TCGA-DD-A1EA-01	2	3	5	2	3	2	4	4
TCGA-DD-A1EB-01	2	2	4	2	3	2	4	3
TCGA-DD-A1EC-01	2	1	1	1	3	2	3	2
TCGA-DD-A1ED-01	2	1	5	2	1	2	1	2
TCGA-DD-A1EE-01	1	3	5	2	3	2	4	4
TCGA-DD-A1EF-01	1	2	7	1	3	2	3	2
TCGA-DD-A1EG-01	1	3	9	2	2	1	2	1
TCGA-DD-A1EH-01	2	2	7	1	1	2	1	2
TCGA-DD-A1EI-01	1	2	3	1	1	2	5	2
TCGA-DD-A1EJ-01	3	3	7	1	3	2	1	2
TCGA-DD-A1EK-01	1	3	NA	NA	2	1	2	1
TCGA-DD-A1EL-01	3	3	5	2	2	1	2	1
TCGA-DD-A39V-01	1	3	NA	NA	3	2	4	4
TCGA-DD-A39W-01	2	3	NA	NA	3	2	1	2
TCGA-DD-A39X-01	1	2	2	2	1	2	5	2
TCGA-DD-A39Y-01	3	3	9	1	3	2	6	1
TCGA-DD-A39Z-01	1	3	NA	NA	3	2	4	4
TCGA-DD-A3A0-01	3	3	NA	NA	1	2	5	2
TCGA-DD-A3A1-01	2	3	NA	NA	3	2	6	3
TCGA-DD-A3A2-01	2	3	4	2	3	2	4	3
TCGA-DD-A3A3-01	1	2	NA	NA	3	2	4	2
TCGA-DD-A3A4-01	2	2	NA	NA	3	2	4	2
TCGA-DD-A3A5-01	3	3	NA	NA	2	2	5	3
TCGA-DD-A3A6-01	2	1	NA	NA	3	2	4	4
TCGA-DD-A3A7-01	3	2	NA	NA	3	2	6	3
TCGA-DD-A3A8-01	1	3	NA	NA	3	2	4	4
TCGA-DD-A3A9-01	3	2	NA	NA	NA	NA	NA	NA
TCGA-DD-A4NA-01	2	1	NA	NA	NA	NA	NA	NA
TCGA-DD-A4NB-01	2	1	NA	NA	NA	NA	NA	NA
TCGA-DD-A4ND-01	2	1	NA	NA	NA	NA	NA	NA
TCGA-ED-A459-01	3	2	NA	NA	NA	NA	NA	NA
TCGA-ED-A4XI-01	2	1	NA	NA	NA	NA	NA	NA
TCGA-EP-A12J-01	1	3	5	2	3	2	4	4
TCGA-EP-A26S-01	1	3	5	2	3	2	4	4
TCGA-EP-A2KA-01	1	3	1	1	1	2	3	2
TCGA-EP-A2KB-01	3	2	7	1	3	2	4	2
TCGA-EP-A2KC-01	1	3	5	2	3	2	4	4
TCGA-EP-A3JL-01	1	3	NA	NA	2	1	2	1
TCGA-EP-A3RK-01	1	1	NA	NA	3	2	4	4
TCGA-ES-A2HS-01	1	NA	4	2	3	2	4	2
TCGA-ES-A2HT-01	1	1	2	2	1	2	5	2
TCGA-FV-A23B-01	2	2	7	1	3	2	1	2
TCGA-FV-A2QQ-01	1	3	9	2	2	2	5	1
TCGA-FV-A2QR-01	3	3	NA	NA	2	2	6	3
TCGA-FV-A3I0-01	3	2	NA	NA	1	2	3	2
TCGA-FV-A3I1-01	1	3	9	2	2	2	2	3
TCGA-FV-A3R2-01	1	3	4	2	NA	NA	NA	NA
TCGA-FV-A3R3-01	2	1	2	1	NA	NA	NA	NA
TCGA-FV-A495-01	3	3	NA	NA	NA	NA	NA	NA
TCGA-FV-A496-01	2	2	NA	NA	NA	NA	NA	NA
TCGA-FV-A4ZP-01	1	2	NA	NA	NA	NA	NA	NA
TCGA-FV-A4ZQ-01	1	2	NA	NA	NA	NA	NA	NA
TCGA-G3-A25S-01	3	3	6	2	2	1	2	1
TCGA-G3-A25T-01	2	1	1	1	1	2	3	2
TCGA-G3-A25U-01	2	3	4	2	3	2	6	3
TCGA-G3-A25V-01	2	1	3	2	1	2	5	3
TCGA-G3-A25W-01	3	1	NA	NA	1	2	6	3
TCGA-G3-A25X-01	3	2	1	1	1	2	3	2
TCGA-G3-A25Y-01	3	2	1	1	1	2	3	2
TCGA-G3-A25Z-01	2	3	3	2	1	2	6	3
TCGA-G3-A3CG-01	1	3	NA	NA	2	2	5	3
TCGA-G3-A3CH-01	2	2	2	2	1	2	5	2
TCGA-G3-A3CI-01	2	1	NA	NA	2	2	4	3
TCGA-G3-A3CJ-01	1	3	5	2	3	2	4	4
TCGA-G3-A3CK-01	2	3	5	2	3	2	4	4
TCGA-MR-A520-01	2	1	NA	NA	NA	NA	NA	NA
