
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/423578/LUAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LUAD-TP/3351464/LUAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=395, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 165 to 158."
[1] 158 172
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           21           151 
  NF1 MUTATED NF1 WILD-TYPE 
           21           151 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           44           128 
  FLG MUTATED FLG WILD-TYPE 
           44           128 
[1] "GPR112 MUTATION ANALYSIS"
[1] 3
  GPR112 MUTATED GPR112 WILD-TYPE 
              35              137 
  GPR112 MUTATED GPR112 WILD-TYPE 
              35              137 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               34               138 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               34               138 
[1] "HRNR MUTATION ANALYSIS"
[1] 3
  HRNR MUTATED HRNR WILD-TYPE 
            25            147 
  HRNR MUTATED HRNR WILD-TYPE 
            25            147 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "U2AF1 MUTATION ANALYSIS"
[1] 3
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             78              94 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             78              94 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             61             111 
  LRP1B MUTATED LRP1B WILD-TYPE 
             61             111 
[1] "OR10J3 MUTATION ANALYSIS"
[1] 3
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              163 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              163 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
[1] "LTBP1 MUTATION ANALYSIS"
[1] 3
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             20             152 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             20             152 
[1] "ZCCHC5 MUTATION ANALYSIS"
[1] 3
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "ADAMTS5 MUTATION ANALYSIS"
[1] 3
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               14               158 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               14               158 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "OR4Q3 MUTATION ANALYSIS"
[1] 3
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             161 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             161 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             165 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             165 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              11              161 
  ARID1A MUTATED ARID1A WILD-TYPE 
              11              161 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
           16           156 
  MGA MUTATED MGA WILD-TYPE 
           16           156 
[1] "IFNA7 MUTATION ANALYSIS"
[1] 3
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
[1] "FANCD2 MUTATION ANALYSIS"
[1] 3
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              165 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              165 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
[1] "SVOP MUTATION ANALYSIS"
[1] 3
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "FGB MUTATION ANALYSIS"
[1] 3
  FGB MUTATED FGB WILD-TYPE 
           11           161 
  FGB MUTATED FGB WILD-TYPE 
           11           161 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "LAX1 MUTATION ANALYSIS"
[1] 3
  LAX1 MUTATED LAX1 WILD-TYPE 
             6            166 
  LAX1 MUTATED LAX1 WILD-TYPE 
             6            166 
[1] "COL19A1 MUTATION ANALYSIS"
[1] 3
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               14               158 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               14               158 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
[1] "OVCH1 MUTATION ANALYSIS"
[1] 3
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             14             158 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             14             158 
[1] "LRRC32 MUTATION ANALYSIS"
[1] 3
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              161 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              161 
[1] "ANP32C MUTATION ANALYSIS"
[1] 3
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              164 
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              164 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              162 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              162 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
[1] "RUFY2 MUTATION ANALYSIS"
[1] 3
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "KIAA1755 MUTATION ANALYSIS"
[1] 3
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                12                160 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                12                160 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             158 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             158 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "TEX15 MUTATION ANALYSIS"
[1] 3
  TEX15 MUTATED TEX15 WILD-TYPE 
             24             148 
  TEX15 MUTATED TEX15 WILD-TYPE 
             24             148 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "DACT1 MUTATION ANALYSIS"
[1] 3
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             162 
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             162 
[1] "KRT28 MUTATION ANALYSIS"
[1] 3
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             165 
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             165 
[1] "OR10R2 MUTATION ANALYSIS"
[1] 3
  OR10R2 MUTATED OR10R2 WILD-TYPE 
              10              162 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
              10              162 
[1] "SUN1 MUTATION ANALYSIS"
[1] 3
  SUN1 MUTATED SUN1 WILD-TYPE 
             8            164 
  SUN1 MUTATED SUN1 WILD-TYPE 
             8            164 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "GNG2 MUTATION ANALYSIS"
[1] 3
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             166 
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             166 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           10           162 
  APC MUTATED APC WILD-TYPE 
           10           162 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "PDGFA MUTATION ANALYSIS"
[1] 3
  PDGFA MUTATED PDGFA WILD-TYPE 
              5             167 
  PDGFA MUTATED PDGFA WILD-TYPE 
              5             167 
[1] "SCG2 MUTATION ANALYSIS"
[1] 3
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            164 
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            164 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             10             162 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             10             162 
[1] "BRE MUTATION ANALYSIS"
[1] 3
  BRE MUTATED BRE WILD-TYPE 
            4           168 
  BRE MUTATED BRE WILD-TYPE 
            4           168 
[1] "C12ORF74 MUTATION ANALYSIS"
[1] 3
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 3                169 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 3                169 
[1] "POF1B MUTATION ANALYSIS"
[1] 3
  POF1B MUTATED POF1B WILD-TYPE 
              9             163 
  POF1B MUTATED POF1B WILD-TYPE 
              9             163 
[1] "OR2F2 MUTATION ANALYSIS"
[1] 3
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             166 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             166 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
          15          157 
  F8 MUTATED F8 WILD-TYPE 
          15          157 
[1] "TSHZ3 MUTATION ANALYSIS"
[1] 3
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             25             147 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             25             147 
[1] "TBX21 MUTATION ANALYSIS"
[1] 3
  TBX21 MUTATED TBX21 WILD-TYPE 
              7             165 
  TBX21 MUTATED TBX21 WILD-TYPE 
              7             165 
[1] "SPATA18 MUTATION ANALYSIS"
[1] 3
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               164 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               164 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
[1] "DENND2A MUTATION ANALYSIS"
[1] 3
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               163 
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               163 
[1] "EPHB6 MUTATION ANALYSIS"
[1] 3
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             19             153 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             19             153 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "TTC18 MUTATION ANALYSIS"
[1] 3
  TTC18 MUTATED TTC18 WILD-TYPE 
              5             167 
  TTC18 MUTATED TTC18 WILD-TYPE 
              5             167 
[1] "FSCB MUTATION ANALYSIS"
[1] 3
  FSCB MUTATED FSCB WILD-TYPE 
            15            157 
  FSCB MUTATED FSCB WILD-TYPE 
            15            157 
[1] "SPTA1 MUTATION ANALYSIS"
[1] 3
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             51             121 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             51             121 
[1] "CTRC MUTATION ANALYSIS"
[1] 3
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "ITGAX MUTATION ANALYSIS"
[1] 3
  ITGAX MUTATED ITGAX WILD-TYPE 
             17             155 
  ITGAX MUTATED ITGAX WILD-TYPE 
             17             155 
[1] "CDH6 MUTATION ANALYSIS"
[1] 3
  CDH6 MUTATED CDH6 WILD-TYPE 
            17            155 
  CDH6 MUTATED CDH6 WILD-TYPE 
            17            155 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             24             148 
  NALCN MUTATED NALCN WILD-TYPE 
             24             148 
[1] "COL5A1 MUTATION ANALYSIS"
[1] 3
  COL5A1 MUTATED COL5A1 WILD-TYPE 
              13              159 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
              13              159 
[1] "SVEP1 MUTATION ANALYSIS"
[1] 3
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             21             151 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             21             151 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "EPS8L3 MUTATION ANALYSIS"
[1] 3
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4              168 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4              168 
[1] "CYP1A1 MUTATION ANALYSIS"
[1] 3
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              168 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              168 
[1] "DEFB112 MUTATION ANALYSIS"
[1] 3
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
[1] "FBXL7 MUTATION ANALYSIS"
[1] 3
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             17             155 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             17             155 
[1] "TARS2 MUTATION ANALYSIS"
[1] 3
  TARS2 MUTATED TARS2 WILD-TYPE 
              8             164 
  TARS2 MUTATED TARS2 WILD-TYPE 
              8             164 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "HOXA5 MUTATION ANALYSIS"
[1] 3
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
[1] "SH2D2A MUTATION ANALYSIS"
[1] 3
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               6              166 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               6              166 
[1] "ABCB5 MUTATION ANALYSIS"
[1] 3
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             19             153 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             19             153 
[1] "ANKRD56 MUTATION ANALYSIS"
[1] 3
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
[1] "GTF2I MUTATION ANALYSIS"
[1] 3
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
[1] "MUC16 MUTATION ANALYSIS"
[1] 3
  MUC16 MUTATED MUC16 WILD-TYPE 
             79              93 
  MUC16 MUTATED MUC16 WILD-TYPE 
             79              93 
[1] "VPS13C MUTATION ANALYSIS"
[1] 3
  VPS13C MUTATED VPS13C WILD-TYPE 
              19              153 
  VPS13C MUTATED VPS13C WILD-TYPE 
              19              153 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
[1] "C1ORF173 MUTATION ANALYSIS"
[1] 3
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                25                147 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                25                147 
[1] "HCK MUTATION ANALYSIS"
[1] 3
  HCK MUTATED HCK WILD-TYPE 
            6           166 
  HCK MUTATED HCK WILD-TYPE 
            6           166 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
              8             164 
  KDM5C MUTATED KDM5C WILD-TYPE 
              8             164 
[1] "KIF9 MUTATION ANALYSIS"
[1] 3
  KIF9 MUTATED KIF9 WILD-TYPE 
             7            165 
  KIF9 MUTATED KIF9 WILD-TYPE 
             7            165 
[1] "BRS3 MUTATION ANALYSIS"
[1] 3
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            165 
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            165 
[1] "SIRPB1 MUTATION ANALYSIS"
[1] 3
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              166 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              166 
[1] "RP1L1 MUTATION ANALYSIS"
[1] 3
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             32             140 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             32             140 
[1] "COL3A1 MUTATION ANALYSIS"
[1] 3
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              22              150 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              22              150 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             14             158 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             14             158 
[1] "HOXA3 MUTATION ANALYSIS"
[1] 3
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              6             166 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              6             166 
[1] "OR56A4 MUTATION ANALYSIS"
[1] 3
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              166 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              166 
[1] "KDR MUTATION ANALYSIS"
[1] 3
  KDR MUTATED KDR WILD-TYPE 
           20           152 
  KDR MUTATED KDR WILD-TYPE 
           20           152 
[1] "ANKRD44 MUTATION ANALYSIS"
[1] 3
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                9               163 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                9               163 
[1] "MFSD8 MUTATION ANALYSIS"
[1] 3
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             167 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             167 
[1] "ZNF260 MUTATION ANALYSIS"
[1] 3
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               4              168 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               4              168 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "C9ORF64 MUTATION ANALYSIS"
[1] 3
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               169 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               169 
[1] "LELP1 MUTATION ANALYSIS"
[1] 3
  LELP1 MUTATED LELP1 WILD-TYPE 
              3             169 
  LELP1 MUTATED LELP1 WILD-TYPE 
              3             169 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "AOAH MUTATION ANALYSIS"
[1] 3
  AOAH MUTATED AOAH WILD-TYPE 
             8            164 
  AOAH MUTATED AOAH WILD-TYPE 
             8            164 
[1] "STAC3 MUTATION ANALYSIS"
[1] 3
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "GRK5 MUTATION ANALYSIS"
[1] 3
  GRK5 MUTATED GRK5 WILD-TYPE 
             7            165 
  GRK5 MUTATED GRK5 WILD-TYPE 
             7            165 
[1] "C8ORF37 MUTATION ANALYSIS"
[1] 3
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               163 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               163 
[1] "TAAR5 MUTATION ANALYSIS"
[1] 3
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             165 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             165 
[1] "TRPC1 MUTATION ANALYSIS"
[1] 3
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              7             165 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              7             165 
[1] "IL18RAP MUTATION ANALYSIS"
[1] 3
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               167 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               167 
[1] "C2ORF39 MUTATION ANALYSIS"
[1] 3
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               164 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               164 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             160 
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             160 
[1] "SPEG MUTATION ANALYSIS"
[1] 3
  SPEG MUTATED SPEG WILD-TYPE 
            16            156 
  SPEG MUTATED SPEG WILD-TYPE 
            16            156 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "HAX1 MUTATION ANALYSIS"
[1] 3
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           15           157 
  ATM MUTATED ATM WILD-TYPE 
           15           157 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "AQP10 MUTATION ANALYSIS"
[1] 3
  AQP10 MUTATED AQP10 WILD-TYPE 
              6             166 
  AQP10 MUTATED AQP10 WILD-TYPE 
              6             166 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              158 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              158 
[1] "OR2G2 MUTATION ANALYSIS"
[1] 3
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             160 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             160 
[1] "CXCL6 MUTATION ANALYSIS"
[1] 3
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             168 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             168 
[1] "BTK MUTATION ANALYSIS"
[1] 3
  BTK MUTATED BTK WILD-TYPE 
            7           165 
  BTK MUTATED BTK WILD-TYPE 
            7           165 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "DYDC2 MUTATION ANALYSIS"
[1] 3
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             169 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             169 
[1] "DGKB MUTATION ANALYSIS"
[1] 3
  DGKB MUTATED DGKB WILD-TYPE 
            11            161 
  DGKB MUTATED DGKB WILD-TYPE 
            11            161 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NUMBERPACKYEARSSMOKED"                 
[14] "YEAROFTOBACCOSMOKINGONSET"             
[15] "DISTANT.METASTASIS"                    
[16] "LYMPH.NODE.METASTASIS"                 
[17] "COMPLETENESS.OF.RESECTION"             
[18] "TUMOR.STAGECODE"                       
[19] "NEOPLASM.DISEASESTAGE"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 172 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158           NA          606          426         1369 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA           NA           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
         578          610           NA           NA          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911          365          913          669          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730           NA           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         2973         3674         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
         863         1073          354         1357          158          574 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
         581          400          529          103          480          400 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
          97          246          311          253          196          189 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
         140          106          208            9          102          302 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
         236           95          165           82         1938           NA 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        1110           NA         2318           NA           NA           NA 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
        1081         1421          428          999          268          896 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
          NA         1314          457          369          395          150 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         1485          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         297         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653           NA           NA          285          135 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         373          349           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
          NA           NA         1015          701         1178         1479 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
        1374           87            2          992           24         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
         628         1189         1126         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1202          223           30          609          573 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
         427          385           NA          161          140          422 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
          61         1599          711          911          617          467 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 
          14           40          122           38           NA           NA 
TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-80-5611 TCGA-86-6562 TCGA-91-6828 
          NA           NA           NA           NA           NA           37 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
          NA           39           35           11 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=123,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=41,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'NUMBERPACKYEARSSMOKED':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'DISTANT.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'LYMPH.NODE.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TUMOR.STAGECODE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOPLASM.DISEASESTAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [6] "NUMBERPACKYEARSSMOKED"                 
 [7] "YEAROFTOBACCOSMOKINGONSET"             
 [8] "DISTANT.METASTASIS"                    
 [9] "LYMPH.NODE.METASTASIS"                 
[10] "COMPLETENESS.OF.RESECTION"             
[11] "TUMOR.STAGECODE"                       
[12] "NEOPLASM.DISEASESTAGE"                 
[1] "TUMOR.?STAGE" "11"          
[1] "stage2"
vv
 T1 T1A T1B  T2 T2A T2B  T3  T4 
 30   5   6  88  15   5  14   8 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 172 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=47, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=39, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    6  2
  CDKN2A WILD-TYPE 97 48
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              145 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               48 
$`CDKN2A MUTATED`
TCGA-05-4426 TCGA-05-4433 TCGA-38-4625 TCGA-44-5645 TCGA-49-4505 TCGA-50-6595 
       26.01        24.00        97.74         6.84        14.07         6.21 
TCGA-55-1594 TCGA-67-3771 
       38.73        20.02 

$`CDKN2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       21.99        26.01        25.02        25.02        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 
       25.51        11.05        12.16        33.37        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            6.21             0.07 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           97.74           120.79 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           22.01            14.04 
[1] "6.2 - 97.7 (22.0)"  "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
[1] "hr=" "1.9"
D1V2, continuous
D1V3, binary
                  cls
clus                0  1
  CDKN2A MUTATED    5  3
  CDKN2A WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      5    3
  CDKN2A WILD-TYPE   88   76
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D1V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDKN2A MUTATED                            0                                 2
  CDKN2A WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDKN2A MUTATED                                                    6
  CDKN2A WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDKN2A MUTATED                                            0
  CDKN2A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDKN2A MUTATED                                               0
  CDKN2A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CDKN2A MUTATED                                0
  CDKN2A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CDKN2A MUTATED                                    0
  CDKN2A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDKN2A MUTATED                              0                             0
  CDKN2A WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDKN2A MUTATED                                               0
  CDKN2A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CDKN2A MUTATED                              0
  CDKN2A WILD-TYPE                            2
D1V5, multiclass
D1V6, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     0   8
  CDKN2A WILD-TYPE  12 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      0    8
  CDKN2A WILD-TYPE   12  152
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               0               12
  YES              8              152
D1V7, continuous
D1V8, continuous
                  vv
clus                M0  M1  MX
  CDKN2A MUTATED     7   0   0
  CDKN2A WILD-TYPE 131   9  23
D1V9, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0              7              131
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  CDKN2A MUTATED    4  1  2  0  0
  CDKN2A WILD-TYPE 91 36 32  1  4
D1V10, multiclass
                  vv
clus               R0 R1 R2 RX
  CDKN2A MUTATED    6  0  0  0
  CDKN2A WILD-TYPE 99  5  4 10
D1V11, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  R0              6               99
  R1              0                5
  R2              0                4
  RX              0               10
D1V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CDKN2A MUTATED          2        3         0         1          2          0
  CDKN2A WILD-TYPE       35       49        10        23         31          6
                  vv
clus               STAGE IV
  CDKN2A MUTATED          0
  CDKN2A WILD-TYPE        9
D1V13, multiclass

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   29 13
  KRAS WILD-TYPE 74 37
  KRAS MUTATED KRAS WILD-TYPE 
            42            111 
  KRAS MUTATED KRAS WILD-TYPE 
            13             37 
$`KRAS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       38.07         3.98        37.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-35-3615 
       14.93         8.98        26.01        25.02        24.00         0.46 
TCGA-38-4626 TCGA-44-2668 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6776 
      120.79         8.09         0.30         3.35         9.93        63.72 
TCGA-44-6777 TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 
       32.45        14.07        29.46        12.99        14.96        35.87 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-55-1595 TCGA-55-6642 TCGA-64-1677 
       77.88         8.45         9.37        48.62        32.61        20.65 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 TCGA-67-3774 
       83.84         0.10        30.44         7.33        14.04        12.66 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4677 TCGA-91-6828 TCGA-91-6836 
       23.38        29.95         0.46         1.25         1.22         0.36 

$`KRAS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       19.92        14.01        45.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.02        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       25.02        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        2.04         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        4.60         3.48         6.84         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        2.70        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       12.66        35.54        46.72        32.84         8.81        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.13         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.78        21.47        15.12         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5779 TCGA-64-5781 
        0.79        56.81        39.09        37.02        16.67        39.52 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.99        20.02        18.84         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        20.28        15.35         1.32         4.01 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  KRAS MUTATED KRAS WILD-TYPE 
          0.10           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
        120.79          97.74 
  KRAS MUTATED KRAS WILD-TYPE 
        14.945         14.010 
[1] "0.1 - 120.8 (14.9)" "0.1 - 97.7 (14.0)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
                cls
clus              0  1
  KRAS MUTATED   23 24
  KRAS WILD-TYPE 70 55
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     23   24
  KRAS WILD-TYPE   70   55
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           23             70
  MALE             24             55
D2V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRAS MUTATED                            0                                12
  KRAS WILD-TYPE                          2                                27
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                   30
  KRAS WILD-TYPE                                                 84
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRAS MUTATED                                            0
  KRAS WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRAS MUTATED                                               1
  KRAS WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  KRAS MUTATED                                1
  KRAS WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  KRAS MUTATED                                    0
  KRAS WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRAS MUTATED                              1                             1
  KRAS WILD-TYPE                            1                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRAS MUTATED                                               0
  KRAS WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  KRAS MUTATED                              1
  KRAS WILD-TYPE                            1
D2V5, multiclass
D2V6, binary
                cls
clus               0   1
  KRAS MUTATED     1  46
  KRAS WILD-TYPE  11 114
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      1   46
  KRAS WILD-TYPE   11  114
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             1             11
  YES           46            114
D2V7, continuous
D2V8, continuous
                vv
clus             M0 M1 MX
  KRAS MUTATED   39  2  6
  KRAS WILD-TYPE 99  7 17
D2V9, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           39             99
  M1            2              7
  MX            6             17
                vv
clus             N0 N1 N2 N3 NX
  KRAS MUTATED   28  7 11  0  1
  KRAS WILD-TYPE 67 30 23  1  3
D2V10, multiclass
                vv
clus             R0 R1 R2 RX
  KRAS MUTATED   30  0  2  3
  KRAS WILD-TYPE 75  5  2  7
D2V11, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           30             75
  R1            0              5
  R2            2              2
  RX            3              7
D2V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KRAS MUTATED          7       18         2         6          9          3
  KRAS WILD-TYPE       30       34         8        18         24          3
                vv
clus             STAGE IV
  KRAS MUTATED          2
  KRAS WILD-TYPE        7
D2V13, multiclass

Clustering(3) Variable = TP53 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   51 27
  TP53 WILD-TYPE 52 23
  TP53 MUTATED TP53 WILD-TYPE 
            78             75 
  TP53 MUTATED TP53 WILD-TYPE 
            27             23 
$`TP53 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       20.05        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5423 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       25.02        24.00         4.96         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
       97.74        28.37        35.28        44.61         5.19        19.10 
TCGA-44-2659 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 
       17.39        15.78         3.19         8.09        10.22         6.44 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 
        3.48         6.84         0.30         3.35         7.76         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4490 
        2.70        32.45        36.49        16.41        28.11        12.66 
TCGA-49-4505 TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 
       14.07        43.20        71.47        48.82         9.76        49.28 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
        8.78        77.88        15.12         9.37        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6712 TCGA-64-1676 
       23.05        38.73        45.17         2.86         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 TCGA-67-3771 
       20.65        39.09         0.10        30.44         0.99        20.02 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
       20.28         0.46         4.01        41.33         1.28         0.36 

$`TP53 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4403 TCGA-05-4415 
       38.07         3.98        45.01        37.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4434 TCGA-05-5420 
       14.93         8.98        12.00        21.99        15.02         1.02 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-4627 
        2.96         0.99         2.04         0.46       120.79        37.71 
TCGA-38-4628 TCGA-38-4631 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 
       49.02        11.64        18.87        13.15         3.39        13.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 
        8.32         6.21         4.60         9.93         3.12        63.72 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       76.21        28.57        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       20.48        14.96        25.81         8.05         9.27        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-6597 TCGA-55-1595 TCGA-55-6543 
       21.47         8.45         4.44        33.37        48.62         0.07 
TCGA-55-6642 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       32.61        37.02        83.84        16.67        39.52         7.33 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        23.38        29.95        15.35         1.32 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6835 
        1.25         1.22         1.15 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         97.74         120.79 
  TP53 MUTATED TP53 WILD-TYPE 
         15.45          14.04 
[1] "0.1 - 97.7 (15.4)"  "0.1 - 120.8 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
                cls
clus              0  1
  TP53 MUTATED   43 44
  TP53 WILD-TYPE 50 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     43   44
  TP53 WILD-TYPE   50   35
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           43             50
  MALE             44             35
D3V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TP53 MUTATED                            1                                22
  TP53 WILD-TYPE                          1                                17
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                   60
  TP53 WILD-TYPE                                                 54
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TP53 MUTATED                                            0
  TP53 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TP53 MUTATED                                               2
  TP53 WILD-TYPE                                             0
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  TP53 MUTATED                                0
  TP53 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  TP53 MUTATED                                    0
  TP53 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TP53 MUTATED                              0                             2
  TP53 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TP53 MUTATED                                               0
  TP53 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  TP53 MUTATED                              0
  TP53 WILD-TYPE                            2
D3V5, multiclass
D3V6, binary
                cls
clus              0  1
  TP53 MUTATED    6 81
  TP53 WILD-TYPE  6 79
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      6   81
  TP53 WILD-TYPE    6   79
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             6              6
  YES           81             79
D3V7, continuous
D3V8, continuous
                vv
clus             M0 M1 MX
  TP53 MUTATED   68  5 12
  TP53 WILD-TYPE 70  4 11
D3V9, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           68             70
  M1            5              4
  MX           12             11
                vv
clus             N0 N1 N2 N3 NX
  TP53 MUTATED   49 17 16  1  3
  TP53 WILD-TYPE 46 20 18  0  1
D3V10, multiclass
                vv
clus             R0 R1 R2 RX
  TP53 MUTATED   50  3  1  5
  TP53 WILD-TYPE 55  2  3  5
D3V11, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           50             55
  R1            3              2
  R2            1              3
  RX            5              5
D3V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TP53 MUTATED         19       27         4        13         15          4
  TP53 WILD-TYPE       18       25         6        11         18          2
                vv
clus             STAGE IV
  TP53 MUTATED          5
  TP53 WILD-TYPE        4
D3V13, multiclass

Clustering(4) Variable = EGFR MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  EGFR MUTATED    9 10
  EGFR WILD-TYPE 94 40
  EGFR MUTATED EGFR WILD-TYPE 
            19            134 
  EGFR MUTATED EGFR WILD-TYPE 
            10             40 
$`EGFR MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-5423 TCGA-38-4627 TCGA-38-4628 
       19.92         9.96         8.02         4.96        37.71        49.02 
TCGA-38-4629 TCGA-38-6178 TCGA-44-6147 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       28.37         5.19         7.76        12.66        35.54        46.72 
TCGA-50-5944 TCGA-50-6591 TCGA-50-6595 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       12.26         3.88         6.21         0.99        18.84        13.87 
TCGA-91-6835 
        1.15 

$`EGFR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02         1.02         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-44-2655 
       97.74       120.79        35.28        11.64        44.61        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4505 TCGA-49-4506 
       16.41        76.21        28.11        28.57        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
        4.44        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        7.33        20.02        14.04        12.66         5.29         4.60 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6836 
        1.28         0.36 

  EGFR MUTATED EGFR WILD-TYPE 
          0.99           0.07 
  EGFR MUTATED EGFR WILD-TYPE 
         49.02         120.79 
  EGFR MUTATED EGFR WILD-TYPE 
         12.26          15.02 
[1] "1.0 - 49.0 (12.3)"  "0.1 - 120.8 (15.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
[1] "hr=" "2.4"
D4V2, continuous
D4V3, binary
                cls
clus              0  1
  EGFR MUTATED   15  7
  EGFR WILD-TYPE 78 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     15    7
  EGFR WILD-TYPE   78   72
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           15             78
  MALE              7             72
D4V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EGFR MUTATED                            1                                 5
  EGFR WILD-TYPE                          1                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EGFR MUTATED                                                   15
  EGFR WILD-TYPE                                                 99
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EGFR MUTATED                                            0
  EGFR WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EGFR MUTATED                                               0
  EGFR WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  EGFR MUTATED                                0
  EGFR WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  EGFR MUTATED                                    1
  EGFR WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EGFR MUTATED                              0                             0
  EGFR WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EGFR MUTATED                                               0
  EGFR WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  EGFR MUTATED                              0
  EGFR WILD-TYPE                            2
D4V5, multiclass
D4V6, binary
                cls
clus               0   1
  EGFR MUTATED     1  21
  EGFR WILD-TYPE  11 139
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      1   21
  EGFR WILD-TYPE   11  139
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO             1             11
  YES           21            139
D4V7, continuous
D4V8, continuous
                vv
clus              M0  M1  MX
  EGFR MUTATED    17   2   2
  EGFR WILD-TYPE 121   7  21
D4V9, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  M0           17            121
  M1            2              7
  MX            2             21
                vv
clus             N0 N1 N2 N3 NX
  EGFR MUTATED    9  6  5  0  2
  EGFR WILD-TYPE 86 31 29  1  2
D4V10, multiclass
                vv
clus             R0 R1 R2 RX
  EGFR MUTATED   12  1  1  1
  EGFR WILD-TYPE 93  4  3  9
D4V11, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  R0           12             93
  R1            1              4
  R2            1              3
  RX            1              9
D4V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EGFR MUTATED          4        4         2         4          5          1
  EGFR WILD-TYPE       33       48         8        20         28          5
                vv
clus             STAGE IV
  EGFR MUTATED          2
  EGFR WILD-TYPE        7
D4V13, multiclass

Clustering(5) Variable = STK11 MUTATION ANALYSIS
D5V1, survival
                 sevent
clus2              0  1
  STK11 MUTATED   10  8
  STK11 WILD-TYPE 93 42
  STK11 MUTATED STK11 WILD-TYPE 
             18             135 
  STK11 MUTATED STK11 WILD-TYPE 
              8              42 
$`STK11 MUTATED`
TCGA-05-4415 TCGA-05-4417 TCGA-05-4422 TCGA-05-4432 TCGA-35-3615 TCGA-44-6144 
        2.96        14.93        12.00        25.02         0.46         0.30 
TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4507 TCGA-50-5072 
       63.72        16.41        76.21        28.11         8.81         8.05 
TCGA-50-5932 TCGA-50-5939 TCGA-55-1596 TCGA-67-3774 TCGA-73-4670 TCGA-73-4677 
       35.87        15.12        45.17        12.66         0.46         1.25 

$`STK11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       32.45        36.49        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76        49.28         9.27         8.78 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
        7.33         0.99        20.02        18.84        14.04         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 
       20.28        15.35         1.32         4.01         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  STK11 MUTATED STK11 WILD-TYPE 
           0.30            0.07 
  STK11 MUTATED STK11 WILD-TYPE 
          76.21          120.79 
  STK11 MUTATED STK11 WILD-TYPE 
         13.795          14.960 
[1] "0.3 - 76.2 (13.8)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "STK11 MUTATED"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "STK11 MUTATED"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "STK11 MUTATED"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
                 cls
clus               0  1
  STK11 MUTATED    7 13
  STK11 WILD-TYPE 86 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      7   13
  STK11 WILD-TYPE   86   66
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  FEMALE             7              86
  MALE              13              66
D5V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STK11 MUTATED                            0                                 6
  STK11 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STK11 MUTATED                                                   14
  STK11 WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STK11 MUTATED                                            0
  STK11 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STK11 MUTATED                                               0
  STK11 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  STK11 MUTATED                                0
  STK11 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  STK11 MUTATED                                    0
  STK11 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STK11 MUTATED                              0                             0
  STK11 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STK11 MUTATED                                               0
  STK11 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  STK11 MUTATED                              0
  STK11 WILD-TYPE                            2
D5V5, multiclass
D5V6, binary
                 cls
clus                0   1
  STK11 MUTATED     2  18
  STK11 WILD-TYPE  10 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      2   18
  STK11 WILD-TYPE   10  142
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  NO              2              10
  YES            18             142
D5V7, continuous
D5V8, continuous
                 vv
clus               M0  M1  MX
  STK11 MUTATED    17   1   2
  STK11 WILD-TYPE 121   8  21
D5V9, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  M0            17             121
  M1             1               8
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  STK11 MUTATED   12  5  3  0  0
  STK11 WILD-TYPE 83 32 31  1  4
D5V10, multiclass
                 vv
clus              R0 R1 R2 RX
  STK11 MUTATED   13  0  0  1
  STK11 WILD-TYPE 92  5  4  9
D5V11, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  R0            13              92
  R1             0               5
  R2             0               4
  RX             1               9
D5V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STK11 MUTATED          5        6         0         4          2          2
  STK11 WILD-TYPE       32       46        10        20         31          4
                 vv
clus              STAGE IV
  STK11 MUTATED          1
  STK11 WILD-TYPE        8
D5V13, multiclass

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   18 11
  KEAP1 WILD-TYPE 85 39
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             29             124 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             11              39 
$`KEAP1 MUTATED`
TCGA-05-4384 TCGA-05-4389 TCGA-05-4418 TCGA-35-3615 TCGA-35-5375 TCGA-38-4631 
       14.01        45.01         8.98         0.46         8.68        11.64 
TCGA-44-2655 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       18.87        63.72        36.49        16.41        76.21        28.57 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 
       32.84         8.81        43.20        15.02        12.13        14.96 
TCGA-50-5068 TCGA-50-5936 TCGA-50-5939 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 
       49.28         8.45        15.12         2.86        39.52        20.02 
TCGA-67-3774 TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       12.66        20.28         0.46         4.01         1.25 

$`KEAP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        2.96         0.99         2.04         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 
       28.11        12.66        35.54        46.72        14.07        29.46 
TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       29.75        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       77.88        21.47         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       18.84        14.04         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-91-6828 
       52.57        23.38        29.95        15.35         1.32         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.46            0.07 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          76.21          120.79 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
         15.020          14.055 
[1] "0.5 - 76.2 (15.0)"  "0.1 - 120.8 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
                 cls
clus               0  1
  KEAP1 MUTATED   17 15
  KEAP1 WILD-TYPE 76 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED     17   15
  KEAP1 WILD-TYPE   76   64
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D6V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KEAP1 MUTATED                            0                                 6
  KEAP1 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KEAP1 MUTATED                                                   22
  KEAP1 WILD-TYPE                                                 92
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KEAP1 MUTATED                                            0
  KEAP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KEAP1 MUTATED                                               0
  KEAP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KEAP1 MUTATED                                1
  KEAP1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KEAP1 MUTATED                                    0
  KEAP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KEAP1 MUTATED                              0                             1
  KEAP1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KEAP1 MUTATED                                               0
  KEAP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  KEAP1 MUTATED                              2
  KEAP1 WILD-TYPE                            0
D6V5, multiclass
D6V6, binary
                 cls
clus                0   1
  KEAP1 MUTATED     3  29
  KEAP1 WILD-TYPE   9 131
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      3   29
  KEAP1 WILD-TYPE    9  131
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              3               9
  YES            29             131
D6V7, continuous
D6V8, continuous
                 vv
clus               M0  M1  MX
  KEAP1 MUTATED    23   2   7
  KEAP1 WILD-TYPE 115   7  16
D6V9, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            23             115
  M1             2               7
  MX             7              16
                 vv
clus              N0 N1 N2 N3 NX
  KEAP1 MUTATED   18  7  7  0  0
  KEAP1 WILD-TYPE 77 30 27  1  4
D6V10, multiclass
                 vv
clus              R0 R1 R2 RX
  KEAP1 MUTATED   20  1  0  2
  KEAP1 WILD-TYPE 85  4  4  8
D6V11, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  R0            20              85
  R1             1               4
  R2             0               4
  RX             2               8
D6V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KEAP1 MUTATED         10        7         1         4          7          1
  KEAP1 WILD-TYPE       27       45         9        20         26          5
                 vv
clus              STAGE IV
  KEAP1 MUTATED          2
  KEAP1 WILD-TYPE        7
D6V13, multiclass

Clustering(7) Variable = CRIPAK MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2               0  1
  CRIPAK MUTATED    6  2
  CRIPAK WILD-TYPE 97 48
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               8              145 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               2               48 
$`CRIPAK MUTATED`
TCGA-05-4396 TCGA-05-4403 TCGA-05-5425 TCGA-05-5715 TCGA-44-2668 TCGA-44-3396 
        9.96        19.00         2.96         2.04         8.09        10.22 
TCGA-44-6148 TCGA-50-6594 
        3.12        12.16 

$`CRIPAK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        4.96         0.99         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3398 
       17.39         3.39        15.78        13.15         3.19         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CRIPAK MUTATED CRIPAK WILD-TYPE 
            2.04             0.07 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           19.00           120.79 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           9.025           15.020 
[1] "2.0 - 19.0 (9.0)"   "0.1 - 120.8 (15.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
[1] "hr=" "2.9"
D7V2, continuous
D7V3, binary
                  cls
clus                0  1
  CRIPAK MUTATED    4  7
  CRIPAK WILD-TYPE 89 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      4    7
  CRIPAK WILD-TYPE   89   72
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  FEMALE              4               89
  MALE                7               72
D7V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CRIPAK MUTATED                            0                                 4
  CRIPAK WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CRIPAK MUTATED                                                    5
  CRIPAK WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CRIPAK MUTATED                                            0
  CRIPAK WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CRIPAK MUTATED                                               0
  CRIPAK WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CRIPAK MUTATED                                0
  CRIPAK WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CRIPAK MUTATED                                    0
  CRIPAK WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CRIPAK MUTATED                              1                             0
  CRIPAK WILD-TYPE                            1                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CRIPAK MUTATED                                               1
  CRIPAK WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CRIPAK MUTATED                              0
  CRIPAK WILD-TYPE                            2
D7V5, multiclass
D7V6, binary
                  cls
clus                 0   1
  CRIPAK MUTATED     0  11
  CRIPAK WILD-TYPE  12 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      0   11
  CRIPAK WILD-TYPE   12  149
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  NO               0               12
  YES             11              149
D7V7, continuous
D7V8, continuous
                  vv
clus                M0  M1  MX
  CRIPAK MUTATED    11   0   0
  CRIPAK WILD-TYPE 127   9  23
D7V9, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  M0             11              127
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  CRIPAK MUTATED    7  2  2  0  0
  CRIPAK WILD-TYPE 88 35 32  1  4
D7V10, multiclass
                  vv
clus               R0 R1 R2 RX
  CRIPAK MUTATED    9  0  0  1
  CRIPAK WILD-TYPE 96  5  4  9
D7V11, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  R0              9               96
  R1              0                5
  R2              0                4
  RX              1                9
D7V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CRIPAK MUTATED          1        6         0         1          2          1
  CRIPAK WILD-TYPE       36       46        10        23         31          5
                  vv
clus               STAGE IV
  CRIPAK MUTATED          0
  CRIPAK WILD-TYPE        9
D7V13, multiclass

Clustering(8) Variable = RBM10 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  RBM10 MUTATED    8  3
  RBM10 WILD-TYPE 95 47
  RBM10 MUTATED RBM10 WILD-TYPE 
             11             142 
  RBM10 MUTATED RBM10 WILD-TYPE 
              3              47 
$`RBM10 MUTATED`
TCGA-05-4403 TCGA-05-4418 TCGA-05-4424 TCGA-35-3615 TCGA-44-2655 TCGA-44-4112 
       19.00         8.98        30.02         0.46        18.87         4.60 
TCGA-49-4494 TCGA-64-1676 TCGA-64-5775 TCGA-67-3770 TCGA-91-6828 
       35.54        56.81         0.10         0.99         1.22 

$`RBM10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05         8.02        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       14.93        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        2.96         0.99         2.04         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  RBM10 MUTATED RBM10 WILD-TYPE 
           0.10            0.07 
  RBM10 MUTATED RBM10 WILD-TYPE 
          56.81          120.79 
  RBM10 MUTATED RBM10 WILD-TYPE 
          8.980          14.945 
[1] "0.1 - 56.8 (9.0)"   "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
                 cls
clus               0  1
  RBM10 MUTATED    3  9
  RBM10 WILD-TYPE 90 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      3    9
  RBM10 WILD-TYPE   90   70
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  FEMALE             3              90
  MALE               9              70
D8V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RBM10 MUTATED                            0                                 4
  RBM10 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RBM10 MUTATED                                                    8
  RBM10 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RBM10 MUTATED                                            0
  RBM10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RBM10 MUTATED                                               0
  RBM10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RBM10 MUTATED                                0
  RBM10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RBM10 MUTATED                                    0
  RBM10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RBM10 MUTATED                              0                             0
  RBM10 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RBM10 MUTATED                                               0
  RBM10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RBM10 MUTATED                              0
  RBM10 WILD-TYPE                            2
D8V5, multiclass
D8V6, binary
                 cls
clus                0   1
  RBM10 MUTATED     0  12
  RBM10 WILD-TYPE  12 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      0   12
  RBM10 WILD-TYPE   12  148
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  NO              0              12
  YES            12             148
D8V7, continuous
D8V8, continuous
                 vv
clus               M0  M1  MX
  RBM10 MUTATED    11   0   1
  RBM10 WILD-TYPE 127   9  22
D8V9, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  M0            11             127
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  RBM10 MUTATED    9  0  3  0  0
  RBM10 WILD-TYPE 86 37 31  1  4
D8V10, multiclass
                 vv
clus              R0 R1 R2 RX
  RBM10 MUTATED   10  1  0  0
  RBM10 WILD-TYPE 95  4  4 10
D8V11, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  R0            10              95
  R1             1               4
  R2             0               4
  RX             0              10
D8V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RBM10 MUTATED          4        3         0         1          3          1
  RBM10 WILD-TYPE       33       49        10        23         30          5
                 vv
clus              STAGE IV
  RBM10 MUTATED          0
  RBM10 WILD-TYPE        9
D8V13, multiclass

Clustering(9) Variable = NF1 MUTATION ANALYSIS
D9V1, survival
               sevent
clus2            0  1
  NF1 MUTATED   10  9
  NF1 WILD-TYPE 93 41
  NF1 MUTATED NF1 WILD-TYPE 
           19           134 
  NF1 MUTATED NF1 WILD-TYPE 
            9            41 
$`NF1 MUTATED`
TCGA-05-4424 TCGA-38-4629 TCGA-38-4631 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       30.02        28.37        11.64        19.10        13.15        17.39 
TCGA-44-3918 TCGA-44-6144 TCGA-44-6775 TCGA-49-4488 TCGA-50-5045 TCGA-50-5068 
        6.44         0.30         2.70        28.57        71.47        49.28 
TCGA-50-5072 TCGA-50-5946 TCGA-50-6593 TCGA-55-1592 TCGA-73-4658 TCGA-73-4676 
        8.05        11.47        11.05        23.05        52.57         4.01 
TCGA-91-6829 
       41.33 

$`NF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2661 
       49.02        35.28        44.61         5.19        18.87         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       14.96        25.81         9.76         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       12.26        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
       15.35         0.46         1.32         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  NF1 MUTATED NF1 WILD-TYPE 
         0.30          0.07 
  NF1 MUTATED NF1 WILD-TYPE 
        71.47        120.79 
  NF1 MUTATED NF1 WILD-TYPE 
        17.39         14.50 
[1] "0.3 - 71.5 (17.4)"  "0.1 - 120.8 (14.5)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
               cls
clus             0  1
  NF1 MUTATED   12  9
  NF1 WILD-TYPE 81 70
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     12    9
  NF1 WILD-TYPE   81   70
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  FEMALE          12            81
  MALE             9            70
D9V4, continuous
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-75-5122 
"NF1 WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NF1 MUTATED                            0                                 3
  NF1 WILD-TYPE                          2                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NF1 MUTATED                                                   17
  NF1 WILD-TYPE                                                 97
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NF1 MUTATED                                            0
  NF1 WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NF1 MUTATED                                               1
  NF1 WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  NF1 MUTATED                                0
  NF1 WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  NF1 MUTATED                                    0                            0
  NF1 WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  NF1 MUTATED                               0
  NF1 WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NF1 MUTATED                                               0
  NF1 WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  NF1 MUTATED                              0
  NF1 WILD-TYPE                            2
D9V5, multiclass
D9V6, binary
               cls
clus              0   1
  NF1 MUTATED     3  18
  NF1 WILD-TYPE   9 142
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED      3   18
  NF1 WILD-TYPE    9  142
     clus
vv    NF1 MUTATED NF1 WILD-TYPE
  NO            3             9
  YES          18           142
D9V7, continuous
D9V8, continuous
               vv
clus             M0  M1  MX
  NF1 MUTATED    15   0   6
  NF1 WILD-TYPE 123   9  17
D9V9, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  M0          15           123
  M1           0             9
  MX           6            17
               vv
clus            N0 N1 N2 N3 NX
  NF1 MUTATED   14  4  2  0  1
  NF1 WILD-TYPE 81 33 32  1  3
D9V10, multiclass
               vv
clus            R0 R1 R2 RX
  NF1 MUTATED   11  1  0  2
  NF1 WILD-TYPE 94  4  4  8
D9V11, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  R0          11            94
  R1           1             4
  R2           0             4
  RX           2             8
D9V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NF1 MUTATED          6        7         1         5          2          0
  NF1 WILD-TYPE       31       45         9        19         31          6
               vv
clus            STAGE IV
  NF1 MUTATED          0
  NF1 WILD-TYPE        9
D9V13, multiclass

Clustering(10) Variable = FLG MUTATION ANALYSIS
D10V1, survival
               sevent
clus2            0  1
  FLG MUTATED   30 10
  FLG WILD-TYPE 73 40
  FLG MUTATED FLG WILD-TYPE 
           40           113 
  FLG MUTATED FLG WILD-TYPE 
           10            40 
$`FLG MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4403 TCGA-05-4420 
       38.07        19.92         9.96        47.05        19.00        29.95 
TCGA-05-4424 TCGA-05-5715 TCGA-38-4626 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       30.02         2.04       120.79        19.10        13.15        17.39 
TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-6147 TCGA-44-6774 TCGA-44-6777 
        8.09         6.44         4.60         7.76         5.42        32.45 
TCGA-44-6779 TCGA-49-4487 TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 TCGA-50-5933 
       16.41        28.11        43.20        71.47        48.82        77.88 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-55-1596 TCGA-55-5899 TCGA-64-1676 
        9.37        42.31        11.05        45.17         2.86        56.81 
TCGA-64-1678 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4662 
       39.09        16.67        39.52        20.02        23.38        29.95 
TCGA-73-4670 TCGA-91-6828 TCGA-91-6829 TCGA-91-6836 
        0.46         1.22        41.33         0.36 

$`FLG WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
        3.98        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 
       20.05         2.96        14.93         8.98        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2661 
       35.28        11.64        44.61         5.19        18.87         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       15.78        13.15         3.19        10.22         8.32         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
        3.48         6.84         0.30         3.35         9.93         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
        2.70        63.72        36.49        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       12.26        11.47         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
       33.37        23.05        38.73        48.62         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
        0.79        20.65        37.02        83.84         0.10        30.44 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        4.60        13.87         2.01        52.57        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.28         1.15 

  FLG MUTATED FLG WILD-TYPE 
         0.36          0.07 
  FLG MUTATED FLG WILD-TYPE 
       120.79         97.74 
  FLG MUTATED FLG WILD-TYPE 
        19.97         12.99 
[1] "0.4 - 120.8 (20.0)" "0.1 - 97.7 (13.0)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
[1] "hr=" "2.2"
D10V2, continuous
D10V3, binary
               cls
clus             0  1
  FLG MUTATED   25 19
  FLG WILD-TYPE 68 60
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     25   19
  FLG WILD-TYPE   68   60
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          25            68
  MALE            19            60
D10V4, continuous
[1] "Remove cluster labels:" "FLG MUTATED"           
clus
  FLG MUTATED FLG WILD-TYPE 
            2            10 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676    TCGA-75-5122 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FLG MUTATED                            1                                11
  FLG WILD-TYPE                          1                                28
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FLG MUTATED                                                   29
  FLG WILD-TYPE                                                 85
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FLG MUTATED                                            0
  FLG WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FLG MUTATED                                               1
  FLG WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  FLG MUTATED                                0
  FLG WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  FLG MUTATED                                    0                            0
  FLG WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  FLG MUTATED                               2
  FLG WILD-TYPE                             3
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FLG MUTATED                                               0
  FLG WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  FLG MUTATED                              0
  FLG WILD-TYPE                            2
D10V5, multiclass
D10V6, binary
               cls
clus              0   1
  FLG MUTATED     3  41
  FLG WILD-TYPE   9 119
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED      3   41
  FLG WILD-TYPE    9  119
     clus
vv    FLG MUTATED FLG WILD-TYPE
  NO            3             9
  YES          41           119
D10V7, continuous
D10V8, continuous
               vv
clus             M0  M1  MX
  FLG MUTATED    38   1   5
  FLG WILD-TYPE 100   8  18
D10V9, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  M0          38           100
  M1           1             8
  MX           5            18
               vv
clus            N0 N1 N2 N3 NX
  FLG MUTATED   26  7  7  1  3
  FLG WILD-TYPE 69 30 27  0  1
D10V10, multiclass
               vv
clus            R0 R1 R2 RX
  FLG MUTATED   26  1  1  2
  FLG WILD-TYPE 79  4  3  8
D10V11, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  R0          26            79
  R1           1             4
  R2           1             3
  RX           2             8
D10V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FLG MUTATED         11       16         3         4          6          3
  FLG WILD-TYPE       26       36         7        20         27          3
               vv
clus            STAGE IV
  FLG MUTATED          1
  FLG WILD-TYPE        8
D10V13, multiclass

Clustering(11) Variable = GPR112 MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2               0  1
  GPR112 MUTATED   19 10
  GPR112 WILD-TYPE 84 40
  GPR112 MUTATED GPR112 WILD-TYPE 
              29              124 
  GPR112 MUTATED GPR112 WILD-TYPE 
              10               40 
$`GPR112 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        45.01        37.02         9.96        24.03 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-35-5375 
       20.05        29.95        30.02        26.01        25.02         8.68 
TCGA-38-4631 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-6777 TCGA-49-4505 
       11.64        19.10        13.15        17.39        32.45        14.07 
TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 TCGA-50-5939 TCGA-50-6590 TCGA-64-1676 
       12.99        71.47        48.82        15.12        42.31        56.81 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-73-4670 TCGA-73-4676 
        0.10        30.44        39.52         0.46         4.01 

$`GPR112 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
       38.07        14.01        47.05         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       14.93         8.98        12.00        21.99        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       18.87         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       28.11        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        4.93        20.48        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
        8.45         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
        0.79        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 
       29.95        20.28        15.35         1.32         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GPR112 MUTATED GPR112 WILD-TYPE 
            0.10             0.07 
  GPR112 MUTATED GPR112 WILD-TYPE 
           71.47           120.79 
  GPR112 MUTATED GPR112 WILD-TYPE 
          20.050           12.905 
[1] "0.1 - 71.5 (20.1)"  "0.1 - 120.8 (12.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-91-6836 
"GPR112 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-91-6836 
"GPR112 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-91-6836 
"GPR112 WILD-TYPE" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
                  cls
clus                0  1
  GPR112 MUTATED   17 18
  GPR112 WILD-TYPE 76 61
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR112 MUTATED     17   18
  GPR112 WILD-TYPE   76   61
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  FEMALE             17               76
  MALE               18               61
D11V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR112 MUTATED                            0                                14
  GPR112 WILD-TYPE                          2                                25
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR112 MUTATED                                                   19
  GPR112 WILD-TYPE                                                 95
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR112 MUTATED                                            0
  GPR112 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR112 MUTATED                                               1
  GPR112 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR112 MUTATED                                0
  GPR112 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR112 MUTATED                                    0
  GPR112 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR112 MUTATED                              0                             1
  GPR112 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR112 MUTATED                                               0
  GPR112 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  GPR112 MUTATED                              0
  GPR112 WILD-TYPE                            2
D11V5, multiclass
D11V6, binary
                  cls
clus                 0   1
  GPR112 MUTATED     3  32
  GPR112 WILD-TYPE   9 128
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR112 MUTATED      3   32
  GPR112 WILD-TYPE    9  128
     clus
vv    GPR112 MUTATED GPR112 WILD-TYPE
  NO               3                9
  YES             32              128
D11V7, continuous
D11V8, continuous
                  vv
clus                M0  M1  MX
  GPR112 MUTATED    30   2   3
  GPR112 WILD-TYPE 108   7  20
D11V9, multiclass
    clus
vv   GPR112 MUTATED GPR112 WILD-TYPE
  M0             30              108
  M1              2                7
  MX              3               20
                  vv
clus               N0 N1 N2 N3 NX
  GPR112 MUTATED   20 10  3  0  2
  GPR112 WILD-TYPE 75 27 31  1  2
D11V10, multiclass
                  vv
clus               R0 R1 R2 RX
  GPR112 MUTATED   23  1  2  3
  GPR112 WILD-TYPE 82  4  2  7
D11V11, multiclass
    clus
vv   GPR112 MUTATED GPR112 WILD-TYPE
  R0             23               82
  R1              1                4
  R2              2                2
  RX              3                7
D11V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GPR112 MUTATED          4       15         2         7          4          1
  GPR112 WILD-TYPE       33       37         8        17         29          5
                  vv
clus               STAGE IV
  GPR112 MUTATED          2
  GPR112 WILD-TYPE        7
D11V13, multiclass

Clustering(12) Variable = SMARCA4 MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                0  1
  SMARCA4 MUTATED    9  3
  SMARCA4 WILD-TYPE 94 47
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               12               141 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                3                47 
$`SMARCA4 MUTATED`
TCGA-05-4432 TCGA-05-5420 TCGA-35-5375 TCGA-38-4631 TCGA-44-2656 TCGA-49-6742 
       25.02         1.02         8.68        11.64        19.10        15.02 
TCGA-50-5072 TCGA-50-5936 TCGA-50-6592 TCGA-55-1596 TCGA-55-6543 TCGA-67-3771 
        8.05         8.45        25.51        45.17         0.07        20.02 

$`SMARCA4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       35.28        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       32.84         8.81        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76        49.28         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 
       33.37        23.05        38.73        48.62         2.86        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
             0.07              0.10 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
            45.17            120.79 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
            13.33             14.93 
[1] "0.1 - 45.2 (13.3)"  "0.1 - 120.8 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6836 
"SMARCA4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6836 
"SMARCA4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6836 
"SMARCA4 WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
                   cls
clus                 0  1
  SMARCA4 MUTATED    5  9
  SMARCA4 WILD-TYPE 88 70
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      5    9
  SMARCA4 WILD-TYPE   88   70
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  FEMALE               5                88
  MALE                 9                70
D12V4, continuous
[1] "Remove cluster labels:" "SMARCA4 MUTATED"       
clus
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SMARCA4 MUTATED                            0
  SMARCA4 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SMARCA4 MUTATED                                   1
  SMARCA4 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SMARCA4 MUTATED                                                    9
  SMARCA4 WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SMARCA4 MUTATED                                            1
  SMARCA4 WILD-TYPE                                          0
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SMARCA4 MUTATED                                               0
  SMARCA4 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SMARCA4 MUTATED                                0
  SMARCA4 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SMARCA4 MUTATED                                    0
  SMARCA4 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SMARCA4 MUTATED                              0                             0
  SMARCA4 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SMARCA4 MUTATED                                               1
  SMARCA4 WILD-TYPE                                             0
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  SMARCA4 MUTATED                              2
  SMARCA4 WILD-TYPE                            0
D12V5, multiclass
D12V6, binary
                   cls
clus                  0   1
  SMARCA4 MUTATED     1  13
  SMARCA4 WILD-TYPE  11 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      1   13
  SMARCA4 WILD-TYPE   11  147
     clus
vv    SMARCA4 MUTATED SMARCA4 WILD-TYPE
  NO                1                11
  YES              13               147
D12V7, continuous
D12V8, continuous
                   vv
clus                 M0  M1  MX
  SMARCA4 MUTATED    11   0   3
  SMARCA4 WILD-TYPE 127   9  20
D12V9, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  M0              11               127
  M1               0                 9
  MX               3                20
                   vv
clus                N0 N1 N2 N3 NX
  SMARCA4 MUTATED    7  3  4  0  0
  SMARCA4 WILD-TYPE 88 34 30  1  4
D12V10, multiclass
                   vv
clus                R0 R1 R2 RX
  SMARCA4 MUTATED    8  0  0  0
  SMARCA4 WILD-TYPE 97  5  4 10
D12V11, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  R0               8                97
  R1               0                 5
  R2               0                 4
  RX               0                10
D12V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SMARCA4 MUTATED          2        4         0         4          4          0
  SMARCA4 WILD-TYPE       35       48        10        20         29          6
                   vv
clus                STAGE IV
  SMARCA4 MUTATED          0
  SMARCA4 WILD-TYPE        9
D12V13, multiclass

Clustering(13) Variable = MUC7 MUTATION ANALYSIS
D13V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED   11  3
  MUC7 WILD-TYPE 92 47
  MUC7 MUTATED MUC7 WILD-TYPE 
            14            139 
  MUC7 MUTATED MUC7 WILD-TYPE 
             3             47 
$`MUC7 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4424 TCGA-35-4122 TCGA-35-5375 TCGA-44-6778 
       19.92        37.02        30.02         7.36         8.68        36.49 
TCGA-49-4507 TCGA-49-6742 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 TCGA-64-5774 
        8.81        15.02        11.05        23.05         2.86        83.84 
TCGA-64-5781 TCGA-91-6828 
       39.52         1.22 

$`MUC7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        45.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 
        2.96         0.99         2.04         0.46         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       33.37        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 
        0.79        56.81        20.65        39.09        37.02         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  MUC7 MUTATED MUC7 WILD-TYPE 
          1.22           0.07 
  MUC7 MUTATED MUC7 WILD-TYPE 
         83.84         120.79 
  MUC7 MUTATED MUC7 WILD-TYPE 
         17.47          14.07 
[1] "1.2 - 83.8 (17.5)"  "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
[1] "hr=" "1.8"
D13V2, continuous
D13V3, binary
                cls
clus              0  1
  MUC7 MUTATED    4 11
  MUC7 WILD-TYPE 89 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      4   11
  MUC7 WILD-TYPE   89   68
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            4             89
  MALE             11             68
D13V4, continuous
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-64-1677     TCGA-64-5778     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MUC7 MUTATED                            0                                 5
  MUC7 WILD-TYPE                          2                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MUC7 MUTATED                                                    9
  MUC7 WILD-TYPE                                                105
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MUC7 MUTATED                                            0
  MUC7 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MUC7 MUTATED                                               0
  MUC7 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MUC7 MUTATED                                0
  MUC7 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MUC7 MUTATED                                    0
  MUC7 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MUC7 MUTATED                              0                             0
  MUC7 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MUC7 MUTATED                                               0
  MUC7 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MUC7 MUTATED                              1
  MUC7 WILD-TYPE                            1
D13V5, multiclass
D13V6, binary
                cls
clus               0   1
  MUC7 MUTATED     1  14
  MUC7 WILD-TYPE  11 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      1   14
  MUC7 WILD-TYPE   11  146
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  NO             1             11
  YES           14            146
D13V7, continuous
D13V8, continuous
                vv
clus              M0  M1  MX
  MUC7 MUTATED    12   0   3
  MUC7 WILD-TYPE 126   9  20
D13V9, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  M0           12            126
  M1            0              9
  MX            3             20
                vv
clus             N0 N1 N2 N3 NX
  MUC7 MUTATED    9  4  2  0  0
  MUC7 WILD-TYPE 86 33 32  1  4
D13V10, multiclass
                vv
clus             R0 R1 R2 RX
  MUC7 MUTATED   10  1  0  0
  MUC7 WILD-TYPE 95  4  4 10
D13V11, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  R0           10             95
  R1            1              4
  R2            0              4
  RX            0             10
D13V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MUC7 MUTATED          5        4         0         3          3          0
  MUC7 WILD-TYPE       32       48        10        21         30          6
                vv
clus             STAGE IV
  MUC7 MUTATED          0
  MUC7 WILD-TYPE        9
D13V13, multiclass

Clustering(14) Variable = COL11A1 MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  COL11A1 MUTATED   20 11
  COL11A1 WILD-TYPE 83 39
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               31               122 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               11                39 
$`COL11A1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-4427 TCGA-35-5375 TCGA-38-4629 
       19.92         9.96         8.02        26.01         8.68        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-4112 
       11.64        44.61        19.10        13.15        17.39         4.60 
TCGA-44-6774 TCGA-44-6776 TCGA-49-4494 TCGA-49-6743 TCGA-50-5049 TCGA-50-5072 
        5.42        63.72        35.54        12.13        48.82         8.05 
TCGA-50-5931 TCGA-50-5941 TCGA-50-6590 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        8.78         9.37        42.31        38.73        48.62        45.17 
TCGA-64-1678 TCGA-64-5775 TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4666 
       39.09         0.10        39.52        20.02        23.38        20.28 
TCGA-73-4677 
        1.25 

$`COL11A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
      120.79        37.71        49.02        35.28         5.19        18.87 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6777 
        3.35         9.93         7.76         3.12         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5932 
       14.96        25.81         9.76        49.28         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       33.37        23.05         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       56.81        20.65        37.02        83.84        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 
        4.60        13.87         2.01        52.57        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  COL11A1 MUTATED COL11A1 WILD-TYPE 
             0.10              0.07 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
            63.72            120.79 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
           19.920            14.025 
[1] "0.1 - 63.7 (19.9)"  "0.1 - 120.8 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-91-6836 
"COL11A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-91-6836 
"COL11A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-91-6836 
"COL11A1 WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
                   cls
clus                 0  1
  COL11A1 MUTATED   18 16
  COL11A1 WILD-TYPE 75 63
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED     18   16
  COL11A1 WILD-TYPE   75   63
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  FEMALE              18                75
  MALE                16                63
D14V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  COL11A1 MUTATED                            0
  COL11A1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL11A1 MUTATED                                   6
  COL11A1 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL11A1 MUTATED                                                   26
  COL11A1 WILD-TYPE                                                 88
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL11A1 MUTATED                                            0
  COL11A1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL11A1 MUTATED                                               0
  COL11A1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  COL11A1 MUTATED                                2
  COL11A1 WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  COL11A1 MUTATED                                    0
  COL11A1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL11A1 MUTATED                              0                             0
  COL11A1 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL11A1 MUTATED                                               0
  COL11A1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  COL11A1 MUTATED                              0
  COL11A1 WILD-TYPE                            2
D14V5, multiclass
D14V6, binary
                   cls
clus                  0   1
  COL11A1 MUTATED     2  32
  COL11A1 WILD-TYPE  10 128
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED      2   32
  COL11A1 WILD-TYPE   10  128
     clus
vv    COL11A1 MUTATED COL11A1 WILD-TYPE
  NO                2                10
  YES              32               128
D14V7, continuous
D14V8, continuous
                   vv
clus                 M0  M1  MX
  COL11A1 MUTATED    28   3   3
  COL11A1 WILD-TYPE 110   6  20
D14V9, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  M0              28               110
  M1               3                 6
  MX               3                20
                   vv
clus                N0 N1 N2 N3 NX
  COL11A1 MUTATED   19  5  8  0  2
  COL11A1 WILD-TYPE 76 32 26  1  2
D14V10, multiclass
                   vv
clus                R0 R1 R2 RX
  COL11A1 MUTATED   23  0  1  1
  COL11A1 WILD-TYPE 82  5  3  9
D14V11, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  R0              23                82
  R1               0                 5
  R2               1                 3
  RX               1                 9
D14V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL11A1 MUTATED          5       10         1         5          9          1
  COL11A1 WILD-TYPE       32       42         9        19         24          5
                   vv
clus                STAGE IV
  COL11A1 MUTATED          3
  COL11A1 WILD-TYPE        6
D14V13, multiclass

Clustering(15) Variable = HRNR MUTATION ANALYSIS
D15V1, survival
                sevent
clus2             0  1
  HRNR MUTATED   14 10
  HRNR WILD-TYPE 89 40
  HRNR MUTATED HRNR WILD-TYPE 
            24            129 
  HRNR MUTATED HRNR WILD-TYPE 
            10             40 
$`HRNR MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 
        3.98        19.92         9.96        47.05         2.96        14.93 
TCGA-05-4427 TCGA-35-4122 TCGA-38-4629 TCGA-44-2666 TCGA-44-3396 TCGA-44-3918 
       26.01         7.36        28.37         3.19        10.22         6.44 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-49-4487 TCGA-50-5051 TCGA-50-5930 
        2.70        63.72        32.45        28.11        14.96         9.27 
TCGA-64-5781 TCGA-67-6215 TCGA-73-4659 TCGA-73-4666 TCGA-91-6829 TCGA-91-6836 
       39.52         5.29        23.38        20.28        41.33         0.36 

$`HRNR WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        17.39         3.39        15.78        13.15         8.09 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6778 
        3.35         9.93         7.76         3.12         5.42        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 
       48.82        25.81         9.76        49.28         8.05         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       14.04        12.66         4.60        13.87         2.01        52.57 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.22         1.28         1.15 

  HRNR MUTATED HRNR WILD-TYPE 
          0.36           0.07 
  HRNR MUTATED HRNR WILD-TYPE 
         63.72         120.79 
  HRNR MUTATED HRNR WILD-TYPE 
        14.945         14.070 
[1] "0.4 - 63.7 (14.9)"  "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED"   "HRNR MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-91-6836 
  "HRNR MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED"   "HRNR MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-91-6836 
  "HRNR MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED"   "HRNR MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-91-6836 
  "HRNR MUTATED" 
[1] "hr=" "1.6"
D15V2, continuous
D15V3, binary
                cls
clus              0  1
  HRNR MUTATED   15 10
  HRNR WILD-TYPE 78 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED     15   10
  HRNR WILD-TYPE   78   69
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  FEMALE           15             78
  MALE             10             69
D15V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HRNR MUTATED                            0                                 9
  HRNR WILD-TYPE                          2                                30
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HRNR MUTATED                                                   15
  HRNR WILD-TYPE                                                 99
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HRNR MUTATED                                            0
  HRNR WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HRNR MUTATED                                               1
  HRNR WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  HRNR MUTATED                                0
  HRNR WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  HRNR MUTATED                                    0
  HRNR WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HRNR MUTATED                              0                             0
  HRNR WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HRNR MUTATED                                               0
  HRNR WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  HRNR MUTATED                              0
  HRNR WILD-TYPE                            2
D15V5, multiclass
D15V6, binary
                cls
clus               0   1
  HRNR MUTATED     3  22
  HRNR WILD-TYPE   9 138
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED      3   22
  HRNR WILD-TYPE    9  138
     clus
vv    HRNR MUTATED HRNR WILD-TYPE
  NO             3              9
  YES           22            138
D15V7, continuous
D15V8, continuous
                vv
clus              M0  M1  MX
  HRNR MUTATED    19   1   5
  HRNR WILD-TYPE 119   8  18
D15V9, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  M0           19            119
  M1            1              8
  MX            5             18
                vv
clus             N0 N1 N2 N3 NX
  HRNR MUTATED   14  3  6  1  1
  HRNR WILD-TYPE 81 34 28  0  3
D15V10, multiclass
                vv
clus             R0 R1 R2 RX
  HRNR MUTATED   18  0  1  1
  HRNR WILD-TYPE 87  5  3  9
D15V11, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  R0           18             87
  R1            0              5
  R2            1              3
  RX            1              9
D15V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HRNR MUTATED          4        9         0         2          5          4
  HRNR WILD-TYPE       33       43        10        22         28          2
                vv
clus             STAGE IV
  HRNR MUTATED          1
  HRNR WILD-TYPE        8
D15V13, multiclass

Clustering(16) Variable = BRAF MUTATION ANALYSIS
D16V1, survival
                sevent
clus2             0  1
  BRAF MUTATED    8  4
  BRAF WILD-TYPE 95 46
  BRAF MUTATED BRAF WILD-TYPE 
            12            141 
  BRAF MUTATED BRAF WILD-TYPE 
             4             46 
$`BRAF MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-44-2662 TCGA-44-2666 TCGA-44-3918 
       38.07        19.92        45.01        15.78         3.19         6.44 
TCGA-44-6774 TCGA-50-5044 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-6594 
        5.42        20.48        77.88         9.37         4.44        12.16 

$`BRAF WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 
       13.15        17.39         3.39        13.15         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45        15.12        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  BRAF MUTATED BRAF WILD-TYPE 
          3.19           0.07 
  BRAF MUTATED BRAF WILD-TYPE 
         77.88         120.79 
  BRAF MUTATED BRAF WILD-TYPE 
         13.97          14.93 
[1] "3.2 - 77.9 (14.0)"  "0.1 - 120.8 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
                cls
clus              0  1
  BRAF MUTATED    6  9
  BRAF WILD-TYPE 87 70
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    9
  BRAF WILD-TYPE   87   70
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            6             87
  MALE              9             70
D16V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRAF MUTATED                            0                                 4
  BRAF WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRAF MUTATED                                                   11
  BRAF WILD-TYPE                                                103
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRAF MUTATED                                            0
  BRAF WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRAF MUTATED                                               0
  BRAF WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BRAF MUTATED                                0
  BRAF WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BRAF MUTATED                                    0
  BRAF WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BRAF MUTATED                              0                             0
  BRAF WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRAF MUTATED                                               0
  BRAF WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  BRAF MUTATED                              0
  BRAF WILD-TYPE                            2
D16V5, multiclass
D16V6, binary
                cls
clus               0   1
  BRAF MUTATED     1  14
  BRAF WILD-TYPE  11 146
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      1   14
  BRAF WILD-TYPE   11  146
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             1             11
  YES           14            146
D16V7, continuous
D16V8, continuous
                vv
clus              M0  M1  MX
  BRAF MUTATED    15   0   0
  BRAF WILD-TYPE 123   9  23
D16V9, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0           15            123
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  BRAF MUTATED    9  2  4  0  0
  BRAF WILD-TYPE 86 35 30  1  4
D16V10, multiclass
                vv
clus             R0 R1 R2 RX
  BRAF MUTATED    8  0  0  1
  BRAF WILD-TYPE 97  5  4  9
D16V11, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  R0            8             97
  R1            0              5
  R2            0              4
  RX            1              9
D16V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BRAF MUTATED          2        6         1         0          3          2
  BRAF WILD-TYPE       35       46         9        24         30          4
                vv
clus             STAGE IV
  BRAF MUTATED          0
  BRAF WILD-TYPE        9
D16V13, multiclass

Clustering(17) Variable = U2AF1 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 98 49
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             147 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              1              49 
$`U2AF1 MUTATED`
TCGA-49-4505 TCGA-49-6743 TCGA-49-6744 TCGA-50-5941 TCGA-55-1595 TCGA-64-1680 
       14.07        12.13        12.99         9.37        48.62        37.02 

$`U2AF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 
       29.46        29.75        43.20        15.02         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        39.09        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  U2AF1 MUTATED U2AF1 WILD-TYPE 
           9.37            0.07 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          48.62          120.79 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          13.53           14.96 
[1] "9.4 - 48.6 (13.5)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
[1] "hr=" "2.2"
D17V2, continuous
D17V3, binary
                 cls
clus               0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 88 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      5    1
  U2AF1 WILD-TYPE   88   78
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  FEMALE             5              88
  MALE               1              78
D17V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  U2AF1 MUTATED                            0                                 2
  U2AF1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  U2AF1 MUTATED                                                    2
  U2AF1 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  U2AF1 MUTATED                                            0
  U2AF1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  U2AF1 MUTATED                                               0
  U2AF1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  U2AF1 MUTATED                                2
  U2AF1 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  U2AF1 MUTATED                                    0
  U2AF1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  U2AF1 MUTATED                              0                             0
  U2AF1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  U2AF1 MUTATED                                               0
  U2AF1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  U2AF1 MUTATED                              0
  U2AF1 WILD-TYPE                            2
D17V5, multiclass
D17V6, binary
                 cls
clus                0   1
  U2AF1 MUTATED     1   5
  U2AF1 WILD-TYPE  11 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      1    5
  U2AF1 WILD-TYPE   11  155
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  NO              1              11
  YES             5             155
D17V7, continuous
D17V8, continuous
                 vv
clus               M0  M1  MX
  U2AF1 MUTATED     3   1   2
  U2AF1 WILD-TYPE 135   8  21
D17V9, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  M0             3             135
  M1             1               8
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  U2AF1 MUTATED    1  2  3  0  0
  U2AF1 WILD-TYPE 94 35 31  1  4
D17V10, multiclass
                 vv
clus               R0  R1  R2  RX
  U2AF1 MUTATED     2   0   0   1
  U2AF1 WILD-TYPE 103   5   4   9
D17V11, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  R0             2             103
  R1             0               5
  R2             0               4
  RX             1               9
D17V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  U2AF1 MUTATED          1        0         1         1          2          0
  U2AF1 WILD-TYPE       36       52         9        23         31          6
                 vv
clus              STAGE IV
  U2AF1 MUTATED          1
  U2AF1 WILD-TYPE        8
D17V13, multiclass

Clustering(18) Variable = PCK1 MUTATION ANALYSIS
D18V1, survival
                sevent
clus2             0  1
  PCK1 MUTATED    4  5
  PCK1 WILD-TYPE 99 45
  PCK1 MUTATED PCK1 WILD-TYPE 
             9            144 
  PCK1 MUTATED PCK1 WILD-TYPE 
             5             45 
$`PCK1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4425 TCGA-38-4632 TCGA-44-2655 TCGA-50-5049 
        3.98         9.96        21.99        44.61        18.87        48.82 
TCGA-64-1677 TCGA-64-5775 TCGA-67-3771 
       20.65         0.10        20.02 

$`PCK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       35.28        11.64         5.19        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       56.81        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  PCK1 MUTATED PCK1 WILD-TYPE 
          0.10           0.07 
  PCK1 MUTATED PCK1 WILD-TYPE 
         48.82         120.79 
  PCK1 MUTATED PCK1 WILD-TYPE 
        20.020         14.055 
[1] "0.1 - 48.8 (20.0)"  "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
[1] "hr=" "1.9"
D18V2, continuous
D18V3, binary
                cls
clus              0  1
  PCK1 MUTATED    5  5
  PCK1 WILD-TYPE 88 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      5    5
  PCK1 WILD-TYPE   88   74
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D18V4, continuous
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PCK1 MUTATED                            0                                 3
  PCK1 WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PCK1 MUTATED                                                    7
  PCK1 WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PCK1 MUTATED                                            0
  PCK1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PCK1 MUTATED                                               0
  PCK1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PCK1 MUTATED                                0
  PCK1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PCK1 MUTATED                                    0
  PCK1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PCK1 MUTATED                              0                             0
  PCK1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PCK1 MUTATED                                               0
  PCK1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  PCK1 MUTATED                              0
  PCK1 WILD-TYPE                            2
D18V5, multiclass
D18V6, binary
                cls
clus               0   1
  PCK1 MUTATED     0  10
  PCK1 WILD-TYPE  12 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      0   10
  PCK1 WILD-TYPE   12  150
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  NO             0             12
  YES           10            150
D18V7, continuous
D18V8, continuous
                vv
clus              M0  M1  MX
  PCK1 MUTATED     8   2   0
  PCK1 WILD-TYPE 130   7  23
D18V9, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  M0            8            130
  M1            2              7
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  PCK1 MUTATED    6  3  1  0  0
  PCK1 WILD-TYPE 89 34 33  1  4
D18V10, multiclass
                vv
clus             R0 R1 R2 RX
  PCK1 MUTATED    6  1  1  1
  PCK1 WILD-TYPE 99  4  3  9
D18V11, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  R0            6             99
  R1            1              4
  R2            1              3
  RX            1              9
D18V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PCK1 MUTATED          3        1         0         0          3          1
  PCK1 WILD-TYPE       34       51        10        24         30          5
                vv
clus             STAGE IV
  PCK1 MUTATED          2
  PCK1 WILD-TYPE        7
D18V13, multiclass

Clustering(19) Variable = CSMD3 MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2              0  1
  CSMD3 MUTATED   48 21
  CSMD3 WILD-TYPE 55 29
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             69              84 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             21              29 
$`CSMD3 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 
       47.05         8.02        20.05        14.93        30.02        26.01 
TCGA-05-4432 TCGA-05-5425 TCGA-38-4625 TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 
       25.02         2.96        97.74        11.64        44.61        19.10 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 
       15.78        13.15         8.09         6.44         4.60         3.48 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        0.30         3.35         7.76         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4505 TCGA-49-4506 
       36.49        16.41        28.11        28.57        14.07        32.84 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5049 TCGA-50-5068 
       43.20        15.02        12.13        12.99        48.82        49.28 
TCGA-50-5933 TCGA-50-5941 TCGA-50-5944 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
       77.88         9.37        12.26        42.31        25.51        11.05 
TCGA-50-6594 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       12.16        23.05        38.73        48.62        45.17         2.86 
TCGA-64-1676 TCGA-64-1678 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       56.81        39.09         0.10        30.44        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
        0.99        20.02        52.57        15.35         0.46         4.01 
TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 
        1.25         1.28         1.15 

$`CSMD3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
        3.98        14.01        19.00         2.96         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       12.00        21.99        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       35.28         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5645 TCGA-44-6146 
        3.19        10.22         8.32         6.21         6.84         9.93 
TCGA-44-6148 TCGA-44-6776 TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.12        63.72        76.21        12.66        35.54        46.72 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
        8.81        29.46        29.75         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5946 
       35.87        21.47         8.45        15.12         4.44        11.47 
TCGA-50-6591 TCGA-50-6595 TCGA-50-6597 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
        3.88         6.21        33.37         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-67-3772 TCGA-67-3773 
       20.65        37.02        83.84        16.67        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
       12.66         5.29         4.60        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-91-6828 TCGA-91-6829 TCGA-91-6836 
       29.95        20.28         1.32         1.22        41.33         0.36 

  CSMD3 MUTATED CSMD3 WILD-TYPE 
           0.10            0.07 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          97.74          120.79 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
         16.410          12.905 
[1] "0.1 - 97.7 (16.4)"  "0.1 - 120.8 (12.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-91-6836 
"CSMD3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-91-6836 
"CSMD3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-91-6836 
"CSMD3 WILD-TYPE" 
[1] "hr=" "1.5"
D19V2, continuous
D19V3, binary
                 cls
clus               0  1
  CSMD3 MUTATED   44 34
  CSMD3 WILD-TYPE 49 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     44   34
  CSMD3 WILD-TYPE   49   45
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE            44              49
  MALE              34              45
D19V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CSMD3 MUTATED                            1                                19
  CSMD3 WILD-TYPE                          1                                20
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CSMD3 MUTATED                                                   50
  CSMD3 WILD-TYPE                                                 64
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CSMD3 MUTATED                                            0
  CSMD3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CSMD3 MUTATED                                               1
  CSMD3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CSMD3 MUTATED                                2
  CSMD3 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CSMD3 MUTATED                                    1
  CSMD3 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CSMD3 MUTATED                              0                             2
  CSMD3 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CSMD3 MUTATED                                               1
  CSMD3 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CSMD3 MUTATED                              1
  CSMD3 WILD-TYPE                            1
D19V5, multiclass
D19V6, binary
                 cls
clus               0  1
  CSMD3 MUTATED    3 75
  CSMD3 WILD-TYPE  9 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED      3   75
  CSMD3 WILD-TYPE    9   85
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  NO              3               9
  YES            75              85
D19V7, continuous
D19V8, continuous
                 vv
clus              M0 M1 MX
  CSMD3 MUTATED   62  3 13
  CSMD3 WILD-TYPE 76  6 10
D19V9, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  M0            62              76
  M1             3               6
  MX            13              10
                 vv
clus              N0 N1 N2 N3 NX
  CSMD3 MUTATED   45 20  9  1  3
  CSMD3 WILD-TYPE 50 17 25  0  1
D19V10, multiclass
                 vv
clus              R0 R1 R2 RX
  CSMD3 MUTATED   47  2  2  5
  CSMD3 WILD-TYPE 58  3  2  5
D19V11, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  R0            47              58
  R1             2               3
  R2             2               2
  RX             5               5
D19V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CSMD3 MUTATED         19       24         4        16          9          3
  CSMD3 WILD-TYPE       18       28         6         8         24          3
                 vv
clus              STAGE IV
  CSMD3 MUTATED          3
  CSMD3 WILD-TYPE        6
D19V13, multiclass

Clustering(20) Variable = RB1 MUTATION ANALYSIS
D20V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    4  3
  RB1 WILD-TYPE 99 47
  RB1 MUTATED RB1 WILD-TYPE 
            7           146 
  RB1 MUTATED RB1 WILD-TYPE 
            3            47 
$`RB1 MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-35-5375 TCGA-44-6775 TCGA-91-6828 TCGA-91-6829 
       24.03         2.96         8.68         2.70         1.22        41.33 
TCGA-91-6835 
        1.15 

$`RB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 
        9.96        47.05         8.02        19.00        20.05        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6831 TCGA-91-6836 
        1.28         0.36 

  RB1 MUTATED RB1 WILD-TYPE 
         1.15          0.07 
  RB1 MUTATED RB1 WILD-TYPE 
        41.33        120.79 
  RB1 MUTATED RB1 WILD-TYPE 
         2.96         14.99 
[1] "1.1 - 41.3 (3.0)"   "0.1 - 120.8 (15.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "2.7"
D20V2, continuous
D20V3, binary
               cls
clus             0  1
  RB1 MUTATED    2  5
  RB1 WILD-TYPE 91 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      2    5
  RB1 WILD-TYPE   91   74
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           2            91
  MALE             5            74
D20V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-75-5122 
"RB1 WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RB1 MUTATED                            0                                 2
  RB1 WILD-TYPE                          2                                37
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RB1 MUTATED                                                    4
  RB1 WILD-TYPE                                                110
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RB1 MUTATED                                            0
  RB1 WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RB1 MUTATED                                               1
  RB1 WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  RB1 MUTATED                                0
  RB1 WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  RB1 MUTATED                                    0                            0
  RB1 WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  RB1 MUTATED                               0
  RB1 WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RB1 MUTATED                                               0
  RB1 WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  RB1 MUTATED                              0
  RB1 WILD-TYPE                            2
D20V5, multiclass
D20V6, binary
               cls
clus              0   1
  RB1 MUTATED     0   7
  RB1 WILD-TYPE  12 153
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0    7
  RB1 WILD-TYPE   12  153
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0            12
  YES           7           153
D20V7, continuous
D20V8, continuous
               vv
clus             M0  M1  MX
  RB1 MUTATED     3   0   4
  RB1 WILD-TYPE 135   9  19
D20V9, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0           3           135
  M1           0             9
  MX           4            19
               vv
clus            N0 N1 N2 N3 NX
  RB1 MUTATED    4  1  2  0  0
  RB1 WILD-TYPE 91 36 32  1  4
D20V10, multiclass
               vv
clus             R0  R1  R2  RX
  RB1 MUTATED     3   0   0   1
  RB1 WILD-TYPE 102   5   4   9
D20V11, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  R0           3           102
  R1           0             5
  R2           0             4
  RX           1             9
D20V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RB1 MUTATED          2        2         0         1          1          1
  RB1 WILD-TYPE       35       50        10        23         32          5
               vv
clus            STAGE IV
  RB1 MUTATED          0
  RB1 WILD-TYPE        9
D20V13, multiclass

Clustering(21) Variable = RIMS2 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED   15 14
  RIMS2 WILD-TYPE 88 36
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             29             124 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             14              36 
$`RIMS2 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4415 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 
       38.07        19.92         2.96        49.02        35.28        44.61 
TCGA-44-2656 TCGA-44-6778 TCGA-49-4510 TCGA-49-6742 TCGA-50-5049 TCGA-50-5066 
       19.10        36.49        29.46        15.02        48.82         9.76 
TCGA-50-5932 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 
       35.87        77.88        42.31        11.05        23.05         2.86 
TCGA-64-1677 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       20.65         0.10        39.52         7.33         0.99        20.02 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-91-6828 TCGA-91-6836 
       52.57        23.38        20.28         1.22         0.36 

$`RIMS2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 
        8.68        97.74       120.79        37.71        28.37        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       35.54        46.72        14.07        32.84         8.81        29.75 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        25.51        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       56.81        39.09        37.02        83.84        30.44        16.67 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
        2.01        29.95        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        41.33         1.28         1.15 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.10            0.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          77.88          120.79 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          20.65           13.15 
[1] "0.1 - 77.9 (20.6)"  "0.1 - 120.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
                 cls
clus               0  1
  RIMS2 MUTATED   14 18
  RIMS2 WILD-TYPE 79 61
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     14   18
  RIMS2 WILD-TYPE   79   61
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE            14              79
  MALE              18              61
D21V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIMS2 MUTATED                            0                                 6
  RIMS2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIMS2 MUTATED                                                   23
  RIMS2 WILD-TYPE                                                 91
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIMS2 MUTATED                                            0
  RIMS2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIMS2 MUTATED                                               0
  RIMS2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RIMS2 MUTATED                                0
  RIMS2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RIMS2 MUTATED                                    0
  RIMS2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIMS2 MUTATED                              0                             2
  RIMS2 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIMS2 MUTATED                                               0
  RIMS2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RIMS2 MUTATED                              1
  RIMS2 WILD-TYPE                            1
D21V5, multiclass
D21V6, binary
                 cls
clus                0   1
  RIMS2 MUTATED     1  31
  RIMS2 WILD-TYPE  11 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      1   31
  RIMS2 WILD-TYPE   11  129
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              1              11
  YES            31             129
D21V7, continuous
D21V8, continuous
                 vv
clus               M0  M1  MX
  RIMS2 MUTATED    25   2   5
  RIMS2 WILD-TYPE 113   7  18
D21V9, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  M0            25             113
  M1             2               7
  MX             5              18
                 vv
clus              N0 N1 N2 N3 NX
  RIMS2 MUTATED   18  8  6  0  0
  RIMS2 WILD-TYPE 77 29 28  1  4
D21V10, multiclass
                 vv
clus              R0 R1 R2 RX
  RIMS2 MUTATED   20  1  1  0
  RIMS2 WILD-TYPE 85  4  3 10
D21V11, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  R0            20              85
  R1             1               4
  R2             1               3
  RX             0              10
D21V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RIMS2 MUTATED          7        9         0         7          5          2
  RIMS2 WILD-TYPE       30       43        10        17         28          4
                 vv
clus              STAGE IV
  RIMS2 MUTATED          2
  RIMS2 WILD-TYPE        7
D21V13, multiclass

Clustering(22) Variable = RIT1 MUTATION ANALYSIS
D22V1, survival
                sevent
clus2             0  1
  RIT1 MUTATED    6  2
  RIT1 WILD-TYPE 97 48
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            145 
  RIT1 MUTATED RIT1 WILD-TYPE 
             2             48 
$`RIT1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-44-6779 TCGA-49-4514 TCGA-55-1596 TCGA-73-4666 
       14.01         9.96        16.41        43.20        45.17        20.28 
TCGA-73-4675 TCGA-91-6836 
        1.32         0.36 

$`RIT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
       13.87         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  RIT1 MUTATED RIT1 WILD-TYPE 
          0.36           0.07 
  RIT1 MUTATED RIT1 WILD-TYPE 
         45.17         120.79 
  RIT1 MUTATED RIT1 WILD-TYPE 
         15.21          14.93 
[1] "0.4 - 45.2 (15.2)"  "0.1 - 120.8 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, binary
                cls
clus              0  1
  RIT1 MUTATED    4  4
  RIT1 WILD-TYPE 89 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      4    4
  RIT1 WILD-TYPE   89   75
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D22V4, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIT1 MUTATED                            0                                 2
  RIT1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIT1 MUTATED                                                    5
  RIT1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIT1 MUTATED                                            0
  RIT1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIT1 MUTATED                                               0
  RIT1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  RIT1 MUTATED                                0
  RIT1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  RIT1 MUTATED                                    0
  RIT1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIT1 MUTATED                              0                             1
  RIT1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIT1 MUTATED                                               0
  RIT1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  RIT1 MUTATED                              0
  RIT1 WILD-TYPE                            2
D22V5, multiclass
D22V6, binary
                cls
clus               0   1
  RIT1 MUTATED     1   7
  RIT1 WILD-TYPE  11 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    7
  RIT1 WILD-TYPE   11  153
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  NO             1             11
  YES            7            153
D22V7, continuous
D22V8, continuous
                vv
clus              M0  M1  MX
  RIT1 MUTATED     5   1   2
  RIT1 WILD-TYPE 133   8  21
D22V9, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  M0            5            133
  M1            1              8
  MX            2             21
                vv
clus             N0 N1 N2 N3 NX
  RIT1 MUTATED    3  4  1  0  0
  RIT1 WILD-TYPE 92 33 33  1  4
D22V10, multiclass
                vv
clus              R0  R1  R2  RX
  RIT1 MUTATED     3   0   0   3
  RIT1 WILD-TYPE 102   5   4   7
D22V11, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  R0            3            102
  R1            0              5
  R2            0              4
  RX            3              7
D22V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RIT1 MUTATED          1        1         0         2          2          1
  RIT1 WILD-TYPE       36       51        10        22         31          5
                vv
clus             STAGE IV
  RIT1 MUTATED          1
  RIT1 WILD-TYPE        8
D22V13, multiclass

Clustering(23) Variable = FTSJD1 MUTATION ANALYSIS
D23V1, survival
                  sevent
clus2               0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 99 48
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              147 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               48 
$`FTSJD1 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4625 TCGA-44-3398 TCGA-44-4112 TCGA-73-4658 
        9.96        29.95        97.74         8.32         4.60        52.57 

$`FTSJD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
        8.09        10.22         6.44         6.21         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
            4.60             0.07 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
           97.74           120.79 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
          19.955           14.930 
[1] "4.6 - 97.7 (20.0)"  "0.1 - 120.8 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
[1] "hr=" "1.9"
D23V2, continuous
D23V3, binary
                  cls
clus                0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      4    2
  FTSJD1 WILD-TYPE   89   77
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D23V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FTSJD1 MUTATED                            0                                 2
  FTSJD1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FTSJD1 MUTATED                                                    4
  FTSJD1 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FTSJD1 MUTATED                                            0
  FTSJD1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FTSJD1 MUTATED                                               0
  FTSJD1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FTSJD1 MUTATED                                0
  FTSJD1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FTSJD1 MUTATED                                    0
  FTSJD1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FTSJD1 MUTATED                              0                             0
  FTSJD1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FTSJD1 MUTATED                                               0
  FTSJD1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  FTSJD1 MUTATED                              0
  FTSJD1 WILD-TYPE                            2
D23V5, multiclass
D23V6, binary
                  cls
clus                 0   1
  FTSJD1 MUTATED     0   6
  FTSJD1 WILD-TYPE  12 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      0    6
  FTSJD1 WILD-TYPE   12  154
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  NO               0               12
  YES              6              154
D23V7, continuous
D23V8, continuous
                  vv
clus                M0  M1  MX
  FTSJD1 MUTATED     6   0   0
  FTSJD1 WILD-TYPE 132   9  23
D23V9, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  M0              6              132
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  FTSJD1 MUTATED    5  1  0  0  0
  FTSJD1 WILD-TYPE 90 36 34  1  4
D23V10, multiclass
                  vv
clus               R0 R1 R2 RX
  FTSJD1 MUTATED    6  0  0  0
  FTSJD1 WILD-TYPE 99  5  4 10
D23V11, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  R0              6               99
  R1              0                5
  R2              0                4
  RX              0               10
D23V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FTSJD1 MUTATED          1        4         0         0          0          1
  FTSJD1 WILD-TYPE       36       48        10        24         33          5
                  vv
clus               STAGE IV
  FTSJD1 MUTATED          0
  FTSJD1 WILD-TYPE        9
D23V13, multiclass

Clustering(24) Variable = LRP1B MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  LRP1B MUTATED   37 17
  LRP1B WILD-TYPE 66 33
  LRP1B MUTATED LRP1B WILD-TYPE 
             54              99 
  LRP1B MUTATED LRP1B WILD-TYPE 
             17              33 
$`LRP1B MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        45.01         9.96        24.03        47.05 
TCGA-05-4405 TCGA-05-4418 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       20.05         8.98        30.02        26.01        25.02        25.02 
TCGA-05-5420 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        1.02         0.46         5.95         8.68        97.74       120.79 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2661 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       11.64        44.61         3.39         8.09         8.32         6.44 
TCGA-44-4112 TCGA-44-6145 TCGA-44-6774 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 
        4.60         3.35         5.42        16.41        28.11        28.57 
TCGA-49-4494 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5049 TCGA-50-5933 
       35.54        15.02        12.13         4.93        48.82        77.88 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-50-6595 TCGA-55-1592 TCGA-55-1596 
        9.37        42.31        11.05         6.21        23.05        45.17 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-67-3771 
       56.81        20.65        37.02         0.10        30.44        20.02 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-91-6828 TCGA-91-6836 
       52.57        29.95        20.28        15.35         1.22         0.36 

$`LRP1B WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
        3.98        14.01        37.02         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4433 
       14.93        29.95        12.00        21.99        26.01        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
       15.02         4.96         2.96         0.99         2.04         7.36 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39        15.78        13.15         3.19 
TCGA-44-3396 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
       10.22         6.21         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-49-4486 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       76.21        12.66        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 
       29.46        29.75        43.20        12.99        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6597 
       12.26        11.47         3.88        25.51        12.16        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       39.09        83.84        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
        2.01        23.38         0.46         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  LRP1B MUTATED LRP1B WILD-TYPE 
           0.10            0.07 
  LRP1B MUTATED LRP1B WILD-TYPE 
         120.79           83.84 
  LRP1B MUTATED LRP1B WILD-TYPE 
         20.035          13.150 
[1] "0.1 - 120.8 (20.0)" "0.1 - 83.8 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-91-6836 
  "LRP1B MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-91-6836 
  "LRP1B MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-91-6836 
  "LRP1B MUTATED" 
[1] "hr=" "1.5"
D24V2, continuous
D24V3, binary
                 cls
clus               0  1
  LRP1B MUTATED   29 32
  LRP1B WILD-TYPE 64 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     29   32
  LRP1B WILD-TYPE   64   47
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            29              64
  MALE              32              47
D24V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRP1B MUTATED                            0                                15
  LRP1B WILD-TYPE                          2                                24
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRP1B MUTATED                                                   39
  LRP1B WILD-TYPE                                                 75
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRP1B MUTATED                                            0
  LRP1B WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRP1B MUTATED                                               1
  LRP1B WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LRP1B MUTATED                                1
  LRP1B WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LRP1B MUTATED                                    1
  LRP1B WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRP1B MUTATED                              0                             2
  LRP1B WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRP1B MUTATED                                               1
  LRP1B WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LRP1B MUTATED                              1
  LRP1B WILD-TYPE                            1
D24V5, multiclass
D24V6, binary
                 cls
clus                0   1
  LRP1B MUTATED     2  59
  LRP1B WILD-TYPE  10 101
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED      2   59
  LRP1B WILD-TYPE   10  101
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  NO              2              10
  YES            59             101
D24V7, continuous
D24V8, continuous
                 vv
clus              M0 M1 MX
  LRP1B MUTATED   51  3  7
  LRP1B WILD-TYPE 87  6 16
D24V9, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  M0            51              87
  M1             3               6
  MX             7              16
                 vv
clus              N0 N1 N2 N3 NX
  LRP1B MUTATED   35 10 15  1  0
  LRP1B WILD-TYPE 60 27 19  0  4
D24V10, multiclass
                 vv
clus              R0 R1 R2 RX
  LRP1B MUTATED   44  1  1  1
  LRP1B WILD-TYPE 61  4  3  9
D24V11, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  R0            44              61
  R1             1               4
  R2             1               3
  RX             1               9
D24V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LRP1B MUTATED         14       17         1         9         13          4
  LRP1B WILD-TYPE       23       35         9        15         20          2
                 vv
clus              STAGE IV
  LRP1B MUTATED          3
  LRP1B WILD-TYPE        6
D24V13, multiclass

Clustering(25) Variable = OR10J3 MUTATION ANALYSIS
D25V1, survival
                  sevent
clus2               0  1
  OR10J3 MUTATED    6  3
  OR10J3 WILD-TYPE 97 47
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              144 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               3               47 
$`OR10J3 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4420 TCGA-05-5423 TCGA-44-3918 TCGA-44-6145 
       38.07         9.96        29.95         4.96         6.44         3.35 
TCGA-50-5935 TCGA-64-5781 TCGA-73-4677 
       21.47        39.52         1.25 

$`OR10J3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
        3.98        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02         1.02         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  OR10J3 MUTATED OR10J3 WILD-TYPE 
            1.25             0.07 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
           39.52           120.79 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
           9.960           14.945 
[1] "1.2 - 39.5 (10.0)"  "0.1 - 120.8 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-91-6836 
"OR10J3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-91-6836 
"OR10J3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-91-6836 
"OR10J3 WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
                  cls
clus                0  1
  OR10J3 MUTATED    4  5
  OR10J3 WILD-TYPE 89 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10J3 MUTATED      4    5
  OR10J3 WILD-TYPE   89   74
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D25V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10J3 MUTATED                            0                                 4
  OR10J3 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10J3 MUTATED                                                    5
  OR10J3 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10J3 MUTATED                                            0
  OR10J3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10J3 MUTATED                                               0
  OR10J3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10J3 MUTATED                                0
  OR10J3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10J3 MUTATED                                    0
  OR10J3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10J3 MUTATED                              0                             0
  OR10J3 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10J3 MUTATED                                               0
  OR10J3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10J3 MUTATED                              0
  OR10J3 WILD-TYPE                            2
D25V5, multiclass
D25V6, binary
                  cls
clus                 0   1
  OR10J3 MUTATED     0   9
  OR10J3 WILD-TYPE  12 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10J3 MUTATED      0    9
  OR10J3 WILD-TYPE   12  151
     clus
vv    OR10J3 MUTATED OR10J3 WILD-TYPE
  NO               0               12
  YES              9              151
D25V7, continuous
D25V8, continuous
                  vv
clus                M0  M1  MX
  OR10J3 MUTATED     9   0   0
  OR10J3 WILD-TYPE 129   9  23
D25V9, multiclass
    clus
vv   OR10J3 MUTATED OR10J3 WILD-TYPE
  M0              9              129
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  OR10J3 MUTATED    7  2  0  0  0
  OR10J3 WILD-TYPE 88 35 34  1  4
D25V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR10J3 MUTATED    7  0  0  0
  OR10J3 WILD-TYPE 98  5  4 10
D25V11, multiclass
    clus
vv   OR10J3 MUTATED OR10J3 WILD-TYPE
  R0              7               98
  R1              0                5
  R2              0                4
  RX              0               10
D25V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10J3 MUTATED          4        3         0         1          0          1
  OR10J3 WILD-TYPE       33       49        10        23         33          5
                  vv
clus               STAGE IV
  OR10J3 MUTATED          0
  OR10J3 WILD-TYPE        9
D25V13, multiclass

Clustering(26) Variable = SETD2 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  SETD2 MUTATED    8  6
  SETD2 WILD-TYPE 95 44
  SETD2 MUTATED SETD2 WILD-TYPE 
             14             139 
  SETD2 MUTATED SETD2 WILD-TYPE 
              6              44 
$`SETD2 MUTATED`
TCGA-05-4396 TCGA-05-4425 TCGA-05-4427 TCGA-38-4631 TCGA-44-2666 TCGA-49-4487 
        9.96        21.99        26.01        11.64         3.19        28.11 
TCGA-49-6744 TCGA-50-5941 TCGA-50-5942 TCGA-64-5775 TCGA-67-6216 TCGA-73-4658 
       12.99         9.37         4.44         0.10         4.60        52.57 
TCGA-73-4666 TCGA-73-4676 
       20.28         4.01 

$`SETD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 
       14.93         8.98        29.95        12.00        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        15.78        13.15         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 
       77.88        21.47         8.45        15.12        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
       13.87         2.01        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SETD2 MUTATED SETD2 WILD-TYPE 
           0.10            0.07 
  SETD2 MUTATED SETD2 WILD-TYPE 
          52.57          120.79 
  SETD2 MUTATED SETD2 WILD-TYPE 
          10.80           15.02 
[1] "0.1 - 52.6 (10.8)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6836 
"SETD2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6836 
"SETD2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6836 
"SETD2 WILD-TYPE" 
[1] "hr=" "2.1"
D26V2, continuous
D26V3, binary
                 cls
clus               0  1
  SETD2 MUTATED   11  4
  SETD2 WILD-TYPE 82 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED     11    4
  SETD2 WILD-TYPE   82   75
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  FEMALE            11              82
  MALE               4              75
D26V4, continuous
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-73-4668      TCGA-75-5122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SETD2 MUTATED                            0                                 4
  SETD2 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SETD2 MUTATED                                                   10
  SETD2 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SETD2 MUTATED                                            0
  SETD2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SETD2 MUTATED                                               0
  SETD2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SETD2 MUTATED                                0
  SETD2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SETD2 MUTATED                                    0
  SETD2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SETD2 MUTATED                              0                             1
  SETD2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SETD2 MUTATED                                               0
  SETD2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SETD2 MUTATED                              0
  SETD2 WILD-TYPE                            2
D26V5, multiclass
D26V6, binary
                 cls
clus                0   1
  SETD2 MUTATED     3  12
  SETD2 WILD-TYPE   9 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      3   12
  SETD2 WILD-TYPE    9  148
     clus
vv    SETD2 MUTATED SETD2 WILD-TYPE
  NO              3               9
  YES            12             148
D26V7, continuous
D26V8, continuous
                 vv
clus               M0  M1  MX
  SETD2 MUTATED    12   2   1
  SETD2 WILD-TYPE 126   7  22
D26V9, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  M0            12             126
  M1             2               7
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  SETD2 MUTATED    9  4  2  0  0
  SETD2 WILD-TYPE 86 33 32  1  4
D26V10, multiclass
                 vv
clus              R0 R1 R2 RX
  SETD2 MUTATED   10  1  1  1
  SETD2 WILD-TYPE 95  4  3  9
D26V11, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  R0            10              95
  R1             1               4
  R2             1               3
  RX             1               9
D26V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SETD2 MUTATED          2        3         2         1          3          1
  SETD2 WILD-TYPE       35       49         8        23         30          5
                 vv
clus              STAGE IV
  SETD2 MUTATED          2
  SETD2 WILD-TYPE        7
D26V13, multiclass

Clustering(27) Variable = LTBP1 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  LTBP1 MUTATED   12  5
  LTBP1 WILD-TYPE 91 45
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             17             136 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
              5              45 
$`LTBP1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 TCGA-38-4625 
       37.02         9.96        26.01        25.02         5.95        97.74 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       44.61        18.87        19.10        32.45        36.49        16.41 
TCGA-49-4488 TCGA-55-1595 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 
       28.57        48.62        39.52        20.02        14.04 

$`LTBP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4626 
        0.99         2.04         0.46         7.36         8.68       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-49-4486 TCGA-49-4487 
        3.12         5.42         2.70        63.72        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       12.16         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        7.33         0.99        18.84        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  LTBP1 MUTATED LTBP1 WILD-TYPE 
           5.95            0.07 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
          97.74          120.79 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
          26.01           13.07 
[1] "6.0 - 97.7 (26.0)"  "0.1 - 120.8 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6836 
"LTBP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6836 
"LTBP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6836 
"LTBP1 WILD-TYPE" 
[1] "hr=" "1.8"
D27V2, continuous
D27V3, binary
                 cls
clus               0  1
  LTBP1 MUTATED   12  8
  LTBP1 WILD-TYPE 81 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LTBP1 MUTATED     12    8
  LTBP1 WILD-TYPE   81   71
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  FEMALE            12              81
  MALE               8              71
D27V4, continuous
[1] "Remove cluster labels:" "LTBP1 MUTATED"         
clus
  LTBP1 MUTATED LTBP1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LTBP1 MUTATED                            0                                 5
  LTBP1 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LTBP1 MUTATED                                                   14
  LTBP1 WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LTBP1 MUTATED                                            0
  LTBP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LTBP1 MUTATED                                               0
  LTBP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LTBP1 MUTATED                                1
  LTBP1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LTBP1 MUTATED                                    0
  LTBP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LTBP1 MUTATED                              0                             0
  LTBP1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LTBP1 MUTATED                                               0
  LTBP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LTBP1 MUTATED                              0
  LTBP1 WILD-TYPE                            2
D27V5, multiclass
D27V6, binary
                 cls
clus                0   1
  LTBP1 MUTATED     1  19
  LTBP1 WILD-TYPE  11 141
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LTBP1 MUTATED      1   19
  LTBP1 WILD-TYPE   11  141
     clus
vv    LTBP1 MUTATED LTBP1 WILD-TYPE
  NO              1              11
  YES            19             141
D27V7, continuous
D27V8, continuous
                 vv
clus               M0  M1  MX
  LTBP1 MUTATED    14   1   5
  LTBP1 WILD-TYPE 124   8  18
D27V9, multiclass
    clus
vv   LTBP1 MUTATED LTBP1 WILD-TYPE
  M0            14             124
  M1             1               8
  MX             5              18
                 vv
clus              N0 N1 N2 N3 NX
  LTBP1 MUTATED   14  5  0  0  1
  LTBP1 WILD-TYPE 81 32 34  1  3
D27V10, multiclass
                 vv
clus              R0 R1 R2 RX
  LTBP1 MUTATED   15  0  0  0
  LTBP1 WILD-TYPE 90  5  4 10
D27V11, multiclass
    clus
vv   LTBP1 MUTATED LTBP1 WILD-TYPE
  R0            15              90
  R1             0               5
  R2             0               4
  RX             0              10
D27V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LTBP1 MUTATED          6        8         0         4          0          1
  LTBP1 WILD-TYPE       31       44        10        20         33          5
                 vv
clus              STAGE IV
  LTBP1 MUTATED          1
  LTBP1 WILD-TYPE        8
D27V13, multiclass

Clustering(28) Variable = ZCCHC5 MUTATION ANALYSIS
D28V1, survival
                  sevent
clus2               0  1
  ZCCHC5 MUTATED    6  2
  ZCCHC5 WILD-TYPE 97 48
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
               8              145 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
               2               48 
$`ZCCHC5 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-05-4430 TCGA-05-5423 TCGA-38-4626 
       37.02         9.96        20.05        25.02         4.96       120.79 
TCGA-44-3396 TCGA-50-6590 
       10.22        42.31 

$`ZCCHC5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
            4.96             0.07 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
          120.79            97.74 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
          22.535           14.070 
[1] "5.0 - 120.8 (22.5)" "0.1 - 97.7 (14.1)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6836 
"ZCCHC5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6836 
"ZCCHC5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6836 
"ZCCHC5 WILD-TYPE" 
[1] "hr=" "2.1"
D28V2, continuous
D28V3, binary
                  cls
clus                0  1
  ZCCHC5 MUTATED    7  3
  ZCCHC5 WILD-TYPE 86 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCCHC5 MUTATED      7    3
  ZCCHC5 WILD-TYPE   86   76
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  FEMALE              7               86
  MALE                3               76
D28V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZCCHC5 MUTATED                            0                                 5
  ZCCHC5 WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZCCHC5 MUTATED                                                    5
  ZCCHC5 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZCCHC5 MUTATED                                            0
  ZCCHC5 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZCCHC5 MUTATED                                               0
  ZCCHC5 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZCCHC5 MUTATED                                0
  ZCCHC5 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZCCHC5 MUTATED                                    0
  ZCCHC5 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZCCHC5 MUTATED                              0                             0
  ZCCHC5 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZCCHC5 MUTATED                                               0
  ZCCHC5 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ZCCHC5 MUTATED                              0
  ZCCHC5 WILD-TYPE                            2
D28V5, multiclass
D28V6, binary
                  cls
clus                 0   1
  ZCCHC5 MUTATED     0  10
  ZCCHC5 WILD-TYPE  12 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCCHC5 MUTATED      0   10
  ZCCHC5 WILD-TYPE   12  150
     clus
vv    ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  NO               0               12
  YES             10              150
D28V7, continuous
D28V8, continuous
                  vv
clus                M0  M1  MX
  ZCCHC5 MUTATED    10   0   0
  ZCCHC5 WILD-TYPE 128   9  23
D28V9, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  M0             10              128
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  ZCCHC5 MUTATED    7  2  1  0  0
  ZCCHC5 WILD-TYPE 88 35 33  1  4
D28V10, multiclass
                  vv
clus               R0 R1 R2 RX
  ZCCHC5 MUTATED    9  0  0  0
  ZCCHC5 WILD-TYPE 96  5  4 10
D28V11, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  R0              9               96
  R1              0                5
  R2              0                4
  RX              0               10
D28V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZCCHC5 MUTATED          0        6         1         1          1          1
  ZCCHC5 WILD-TYPE       37       46         9        23         32          5
                  vv
clus               STAGE IV
  ZCCHC5 MUTATED          0
  ZCCHC5 WILD-TYPE        9
D28V13, multiclass

Clustering(29) Variable = MYL10 MUTATION ANALYSIS
D29V1, survival
                 sevent
clus2               0   1
  MYL10 MUTATED     3   2
  MYL10 WILD-TYPE 100  48
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             148 
  MYL10 MUTATED MYL10 WILD-TYPE 
              2              48 
$`MYL10 MUTATED`
TCGA-05-4250 TCGA-05-4398 TCGA-05-4418 TCGA-05-4430 TCGA-73-4676 
        3.98        47.05         8.98        25.02         4.01 

$`MYL10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 
       20.28        15.35         0.46         1.32         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MYL10 MUTATED MYL10 WILD-TYPE 
           3.98            0.07 
  MYL10 MUTATED MYL10 WILD-TYPE 
          47.05          120.79 
  MYL10 MUTATED MYL10 WILD-TYPE 
          8.980          14.945 
[1] "4.0 - 47.0 (9.0)"   "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
[1] "hr=" "1.5"
D29V2, continuous
D29V3, binary
                 cls
clus               0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 90 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      3    2
  MYL10 WILD-TYPE   90   77
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D29V4, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MYL10 MUTATED                            0                                 3
  MYL10 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MYL10 MUTATED                                                    2
  MYL10 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MYL10 MUTATED                                            0
  MYL10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MYL10 MUTATED                                               0
  MYL10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MYL10 MUTATED                                0
  MYL10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MYL10 MUTATED                                    0
  MYL10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MYL10 MUTATED                              0                             0
  MYL10 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MYL10 MUTATED                                               0
  MYL10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  MYL10 MUTATED                              0
  MYL10 WILD-TYPE                            2
D29V5, multiclass
D29V6, binary
                 cls
clus                0   1
  MYL10 MUTATED     1   4
  MYL10 WILD-TYPE  11 156
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      1    4
  MYL10 WILD-TYPE   11  156
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  NO              1              11
  YES             4             156
D29V7, continuous
D29V8, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-73-4659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4675      TCGA-91-6829      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
                 vv
clus               M0  M1  MX
  MYL10 MUTATED     5   0   0
  MYL10 WILD-TYPE 133   9  23
D29V9, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  MYL10 MUTATED    1  2  1  1  0
  MYL10 WILD-TYPE 94 35 33  0  4
D29V10, multiclass
                 vv
clus               R0  R1  R2  RX
  MYL10 MUTATED     4   0   1   0
  MYL10 WILD-TYPE 101   5   3  10
D29V11, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  R0             4             101
  R1             0               5
  R2             1               3
  RX             0              10
D29V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MYL10 MUTATED          0        1         1         0          2          1
  MYL10 WILD-TYPE       37       51         9        24         31          5
                 vv
clus              STAGE IV
  MYL10 MUTATED          0
  MYL10 WILD-TYPE        9
D29V13, multiclass

Clustering(30) Variable = GBA3 MUTATION ANALYSIS
D30V1, survival
                sevent
clus2              0   1
  GBA3 MUTATED     3   5
  GBA3 WILD-TYPE 100  45
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            145 
  GBA3 MUTATED GBA3 WILD-TYPE 
             5             45 
$`GBA3 MUTATED`
TCGA-38-4631 TCGA-44-6145 TCGA-49-4514 TCGA-50-5931 TCGA-64-5778 TCGA-73-4658 
       11.64         3.35        43.20         8.78        30.44        52.57 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`GBA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.46         1.32         4.01         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  GBA3 MUTATED GBA3 WILD-TYPE 
          1.25           0.07 
  GBA3 MUTATED GBA3 WILD-TYPE 
         52.57         120.79 
  GBA3 MUTATED GBA3 WILD-TYPE 
         21.04          14.93 
[1] "1.2 - 52.6 (21.0)"  "0.1 - 120.8 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
[1] "hr=" "1.5"
D30V2, continuous
D30V3, binary
                cls
clus              0  1
  GBA3 MUTATED    5  3
  GBA3 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      5    3
  GBA3 WILD-TYPE   88   76
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D30V4, continuous
[1] "Remove cluster labels:" "GBA3 MUTATED"          
clus
  GBA3 MUTATED GBA3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GBA3 MUTATED                            0                                 0
  GBA3 WILD-TYPE                          2                                39
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GBA3 MUTATED                                                    5
  GBA3 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GBA3 MUTATED                                            0
  GBA3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GBA3 MUTATED                                               2
  GBA3 WILD-TYPE                                             0
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GBA3 MUTATED                                0
  GBA3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GBA3 MUTATED                                    0
  GBA3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GBA3 MUTATED                              0                             1
  GBA3 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GBA3 MUTATED                                               0
  GBA3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  GBA3 MUTATED                              0
  GBA3 WILD-TYPE                            2
D30V5, multiclass
D30V6, binary
                cls
clus               0   1
  GBA3 MUTATED     0   8
  GBA3 WILD-TYPE  12 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    8
  GBA3 WILD-TYPE   12  152
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0             12
  YES            8            152
D30V7, continuous
D30V8, continuous
                vv
clus              M0  M1  MX
  GBA3 MUTATED     7   0   1
  GBA3 WILD-TYPE 131   9  22
D30V9, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            7            131
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  GBA3 MUTATED    8  0  0  0  0
  GBA3 WILD-TYPE 87 37 34  1  4
D30V10, multiclass
                vv
clus              R0  R1  R2  RX
  GBA3 MUTATED     5   0   0   1
  GBA3 WILD-TYPE 100   5   4   9
D30V11, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  R0            5            100
  R1            0              5
  R2            0              4
  RX            1              9
D30V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GBA3 MUTATED          3        5         0         0          0          0
  GBA3 WILD-TYPE       34       47        10        24         33          6
                vv
clus             STAGE IV
  GBA3 MUTATED          0
  GBA3 WILD-TYPE        9
D30V13, multiclass

Clustering(31) Variable = ADAMTS5 MUTATION ANALYSIS
D31V1, survival
                   sevent
clus2                0  1
  ADAMTS5 MUTATED   12  1
  ADAMTS5 WILD-TYPE 91 49
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               13               140 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                1                49 
$`ADAMTS5 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-38-4626 
       38.07        19.92        37.02         9.96        47.05       120.79 
TCGA-44-2659 TCGA-50-5049 TCGA-64-1678 TCGA-64-5774 TCGA-67-6217 TCGA-73-4662 
       17.39        48.82        39.09        83.84        13.87        29.95 
TCGA-73-4666 
       20.28 

$`ADAMTS5 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 
        3.98        14.01        45.01        24.03         8.02        19.00 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       20.05         2.96        14.93         8.98        29.95        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       30.02        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 
        4.60         2.01        52.57        23.38        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
             9.96              0.07 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
           120.79             97.74 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
            37.02             13.15 
[1] "10.0 - 120.8 (37.0)" "0.1 - 97.7 (13.2)"  
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS5 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS5 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS5 WILD-TYPE" 
[1] "hr=" "11" 
D31V2, continuous
D31V3, binary
                   cls
clus                 0  1
  ADAMTS5 MUTATED    8  6
  ADAMTS5 WILD-TYPE 85 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      8    6
  ADAMTS5 WILD-TYPE   85   73
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  FEMALE               8                85
  MALE                 6                73
D31V4, continuous
[1] "Remove cluster labels:" "ADAMTS5 MUTATED"       
clus
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4668 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ADAMTS5 MUTATED                            0
  ADAMTS5 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ADAMTS5 MUTATED                                   5
  ADAMTS5 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ADAMTS5 MUTATED                                                    9
  ADAMTS5 WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ADAMTS5 MUTATED                                            0
  ADAMTS5 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ADAMTS5 MUTATED                                               0
  ADAMTS5 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ADAMTS5 MUTATED                                0
  ADAMTS5 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ADAMTS5 MUTATED                                    0
  ADAMTS5 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ADAMTS5 MUTATED                              0                             0
  ADAMTS5 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ADAMTS5 MUTATED                                               0
  ADAMTS5 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ADAMTS5 MUTATED                              0
  ADAMTS5 WILD-TYPE                            2
D31V5, multiclass
D31V6, binary
                   cls
clus                  0   1
  ADAMTS5 MUTATED     1  13
  ADAMTS5 WILD-TYPE  11 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      1   13
  ADAMTS5 WILD-TYPE   11  147
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  NO                1                11
  YES              13               147
D31V7, continuous
D31V8, continuous
                   vv
clus                 M0  M1  MX
  ADAMTS5 MUTATED    13   1   0
  ADAMTS5 WILD-TYPE 125   8  23
D31V9, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  M0              13               125
  M1               1                 8
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  ADAMTS5 MUTATED   10  3  0  1  0
  ADAMTS5 WILD-TYPE 85 34 34  0  4
D31V10, multiclass
                   vv
clus                R0 R1 R2 RX
  ADAMTS5 MUTATED   12  0  0  1
  ADAMTS5 WILD-TYPE 93  5  4  9
D31V11, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  R0              12                93
  R1               0                 5
  R2               0                 4
  RX               1                 9
D31V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ADAMTS5 MUTATED          2        5         2         2          0          2
  ADAMTS5 WILD-TYPE       35       47         8        22         33          4
                   vv
clus                STAGE IV
  ADAMTS5 MUTATED          1
  ADAMTS5 WILD-TYPE        8
D31V13, multiclass

Clustering(32) Variable = ZNF268 MUTATION ANALYSIS
D32V1, survival
                  sevent
clus2                0   1
  ZNF268 MUTATED     2   2
  ZNF268 WILD-TYPE 101  48
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               4              149 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               2               48 
$`ZNF268 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-55-1592 
       24.03        19.10         6.44        23.05 

$`ZNF268 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZNF268 MUTATED ZNF268 WILD-TYPE 
            6.44             0.07 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
           24.03           120.79 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
          21.075           14.070 
[1] "6.4 - 24.0 (21.1)"  "0.1 - 120.8 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
[1] "hr=" "2.3"
D32V2, continuous
D32V3, binary
                  cls
clus                0  1
  ZNF268 MUTATED    1  4
  ZNF268 WILD-TYPE 92 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      1    4
  ZNF268 WILD-TYPE   92   75
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D32V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF268 MUTATED                            0                                 1
  ZNF268 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF268 MUTATED                                                    4
  ZNF268 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF268 MUTATED                                            0
  ZNF268 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF268 MUTATED                                               0
  ZNF268 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF268 MUTATED                                0
  ZNF268 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF268 MUTATED                                    0
  ZNF268 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF268 MUTATED                              0                             0
  ZNF268 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF268 MUTATED                                               0
  ZNF268 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ZNF268 MUTATED                              0
  ZNF268 WILD-TYPE                            2
D32V5, multiclass
D32V6, binary
                  cls
clus                 0   1
  ZNF268 MUTATED     0   5
  ZNF268 WILD-TYPE  12 155
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      0    5
  ZNF268 WILD-TYPE   12  155
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  NO               0               12
  YES              5              155
D32V7, continuous
D32V8, continuous
                  vv
clus                M0  M1  MX
  ZNF268 MUTATED     4   1   0
  ZNF268 WILD-TYPE 134   8  23
D32V9, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  M0              4              134
  M1              1                8
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  ZNF268 MUTATED    3  1  1  0  0
  ZNF268 WILD-TYPE 92 36 33  1  4
D32V10, multiclass
                  vv
clus                R0  R1  R2  RX
  ZNF268 MUTATED     3   0   0   1
  ZNF268 WILD-TYPE 102   5   4   9
D32V11, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  R0              3              102
  R1              0                5
  R2              0                4
  RX              1                9
D32V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZNF268 MUTATED          2        1         0         1          0          0
  ZNF268 WILD-TYPE       35       51        10        23         33          6
                  vv
clus               STAGE IV
  ZNF268 MUTATED          1
  ZNF268 WILD-TYPE        8
D32V13, multiclass

Clustering(33) Variable = OR4Q3 MUTATION ANALYSIS
D33V1, survival
                 sevent
clus2              0  1
  OR4Q3 MUTATED    6  5
  OR4Q3 WILD-TYPE 97 45
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             142 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              5              45 
$`OR4Q3 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4418 TCGA-05-4424 TCGA-05-4432 TCGA-05-5715 
       19.92        24.03         8.98        30.02        25.02         2.04 
TCGA-38-4632 TCGA-44-5643 TCGA-49-4490 TCGA-50-5072 TCGA-73-4658 
       44.61         3.48        12.66         8.05        52.57 

$`OR4Q3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       29.95        12.00        21.99        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 
       36.49        16.41        76.21        28.11        28.57        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
           2.04            0.07 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
          52.57          120.79 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
          19.92           14.50 
[1] "2.0 - 52.6 (19.9)"  "0.1 - 120.8 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6836 
"OR4Q3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6836 
"OR4Q3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6836 
"OR4Q3 WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
                 cls
clus               0  1
  OR4Q3 MUTATED    3  8
  OR4Q3 WILD-TYPE 90 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4Q3 MUTATED      3    8
  OR4Q3 WILD-TYPE   90   71
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D33V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4Q3 MUTATED                            0                                 6
  OR4Q3 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4Q3 MUTATED                                                    5
  OR4Q3 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4Q3 MUTATED                                            0
  OR4Q3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4Q3 MUTATED                                               0
  OR4Q3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR4Q3 MUTATED                                0
  OR4Q3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4Q3 MUTATED                                    0
  OR4Q3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4Q3 MUTATED                              0                             0
  OR4Q3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4Q3 MUTATED                                               0
  OR4Q3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR4Q3 MUTATED                              0
  OR4Q3 WILD-TYPE                            2
D33V5, multiclass
D33V6, binary
                 cls
clus                0   1
  OR4Q3 MUTATED     3   8
  OR4Q3 WILD-TYPE   9 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4Q3 MUTATED      3    8
  OR4Q3 WILD-TYPE    9  152
     clus
vv    OR4Q3 MUTATED OR4Q3 WILD-TYPE
  NO              3               9
  YES             8             152
D33V7, continuous
D33V8, continuous
[1] "Remove cluster labels:" "OR4Q3 MUTATED"         
clus
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4427 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
                 vv
clus               M0  M1  MX
  OR4Q3 MUTATED    10   1   0
  OR4Q3 WILD-TYPE 128   8  23
D33V9, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  M0            10             128
  M1             1               8
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  OR4Q3 MUTATED    4  3  4  0  0
  OR4Q3 WILD-TYPE 91 34 30  1  4
D33V10, multiclass
                 vv
clus              R0 R1 R2 RX
  OR4Q3 MUTATED    7  1  0  0
  OR4Q3 WILD-TYPE 98  4  4 10
D33V11, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  R0             7              98
  R1             1               4
  R2             0               4
  RX             0              10
D33V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR4Q3 MUTATED          0        3         0         3          4          0
  OR4Q3 WILD-TYPE       37       49        10        21         29          6
                 vv
clus              STAGE IV
  OR4Q3 MUTATED          1
  OR4Q3 WILD-TYPE        8
D33V13, multiclass

Clustering(34) Variable = SMAD4 MUTATION ANALYSIS
D34V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    5  2
  SMAD4 WILD-TYPE 98 48
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             146 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              2              48 
$`SMAD4 MUTATED`
TCGA-05-4396 TCGA-05-5429 TCGA-05-5715 TCGA-38-4625 TCGA-44-2662 TCGA-49-4490 
        9.96         0.99         2.04        97.74        15.78        12.66 
TCGA-67-6216 
        4.60 

$`SMAD4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         4.96         2.96         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-71-6725 
       18.84        14.04        12.66         5.29        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.99            0.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          97.74          120.79 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           9.96           14.99 
[1] "1.0 - 97.7 (10.0)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
  "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6836 
"SMAD4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
  "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6836 
"SMAD4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
  "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6836 
"SMAD4 WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, binary
                 cls
clus               0  1
  SMAD4 MUTATED    4  3
  SMAD4 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      4    3
  SMAD4 WILD-TYPE   89   76
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D34V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SMAD4 MUTATED                            0                                 2
  SMAD4 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SMAD4 MUTATED                                                    5
  SMAD4 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SMAD4 MUTATED                                            0
  SMAD4 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SMAD4 MUTATED                                               0
  SMAD4 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SMAD4 MUTATED                                0
  SMAD4 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SMAD4 MUTATED                                    0
  SMAD4 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SMAD4 MUTATED                              0                             0
  SMAD4 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SMAD4 MUTATED                                               0
  SMAD4 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SMAD4 MUTATED                              0
  SMAD4 WILD-TYPE                            2
D34V5, multiclass
D34V6, binary
                 cls
clus                0   1
  SMAD4 MUTATED     1   6
  SMAD4 WILD-TYPE  11 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      1    6
  SMAD4 WILD-TYPE   11  154
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  NO              1              11
  YES             6             154
D34V7, continuous
D34V8, continuous
                 vv
clus               M0  M1  MX
  SMAD4 MUTATED     7   0   0
  SMAD4 WILD-TYPE 131   9  23
D34V9, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             7             131
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  SMAD4 MUTATED    4  1  2  0  0
  SMAD4 WILD-TYPE 91 36 32  1  4
D34V10, multiclass
                 vv
clus              R0 R1 R2 RX
  SMAD4 MUTATED    6  0  0  0
  SMAD4 WILD-TYPE 99  5  4 10
D34V11, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0             6              99
  R1             0               5
  R2             0               4
  RX             0              10
D34V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SMAD4 MUTATED          1        3         0         0          2          1
  SMAD4 WILD-TYPE       36       49        10        24         31          5
                 vv
clus              STAGE IV
  SMAD4 MUTATED          0
  SMAD4 WILD-TYPE        9
D34V13, multiclass

Clustering(35) Variable = ARID1A MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED    9  1
  ARID1A WILD-TYPE 94 49
  ARID1A MUTATED ARID1A WILD-TYPE 
              10              143 
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               49 
$`ARID1A MUTATED`
TCGA-05-4382 TCGA-05-4425 TCGA-05-4427 TCGA-05-5715 TCGA-38-4631 TCGA-44-6147 
       19.92        21.99        26.01         2.04        11.64         7.76 
TCGA-55-5899 TCGA-64-1678 TCGA-67-3771 TCGA-91-6831 
        2.86        39.09        20.02         1.28 

$`ARID1A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 
       14.93         8.98        29.95        12.00        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        2.96         0.99         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  ARID1A MUTATED ARID1A WILD-TYPE 
            1.28             0.07 
  ARID1A MUTATED ARID1A WILD-TYPE 
           39.09           120.79 
  ARID1A MUTATED ARID1A WILD-TYPE 
           15.78            14.93 
[1] "1.3 - 39.1 (15.8)"  "0.1 - 120.8 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-91-6836 
"ARID1A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-91-6836 
"ARID1A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-91-6836 
"ARID1A WILD-TYPE" 
[1] "hr=" "2"  
D35V2, continuous
D35V3, binary
                  cls
clus                0  1
  ARID1A MUTATED    7  4
  ARID1A WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      7    4
  ARID1A WILD-TYPE   86   75
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D35V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ARID1A MUTATED                            0                                 4
  ARID1A WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ARID1A MUTATED                                                    7
  ARID1A WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ARID1A MUTATED                                            0
  ARID1A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ARID1A MUTATED                                               0
  ARID1A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ARID1A MUTATED                                0
  ARID1A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ARID1A MUTATED                                    0
  ARID1A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ARID1A MUTATED                              0                             0
  ARID1A WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ARID1A MUTATED                                               0
  ARID1A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ARID1A MUTATED                              0
  ARID1A WILD-TYPE                            2
D35V5, multiclass
D35V6, binary
                  cls
clus                 0   1
  ARID1A MUTATED     0  11
  ARID1A WILD-TYPE  12 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      0   11
  ARID1A WILD-TYPE   12  149
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               0               12
  YES             11              149
D35V7, continuous
D35V8, continuous
                  vv
clus                M0  M1  MX
  ARID1A MUTATED     9   1   1
  ARID1A WILD-TYPE 129   8  22
D35V9, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0              9              129
  M1              1                8
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  ARID1A MUTATED    7  2  1  0  1
  ARID1A WILD-TYPE 88 35 33  1  3
D35V10, multiclass
                  vv
clus               R0 R1 R2 RX
  ARID1A MUTATED    8  1  0  0
  ARID1A WILD-TYPE 97  4  4 10
D35V11, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  R0              8               97
  R1              1                4
  R2              0                4
  RX              0               10
D35V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ARID1A MUTATED          3        4         1         1          1          0
  ARID1A WILD-TYPE       34       48         9        23         32          6
                  vv
clus               STAGE IV
  ARID1A MUTATED          1
  ARID1A WILD-TYPE        8
D35V13, multiclass

Clustering(36) Variable = CCDC73 MUTATION ANALYSIS
D36V1, survival
                  sevent
clus2               0  1
  CCDC73 MUTATED    7  3
  CCDC73 WILD-TYPE 96 47
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              10              143 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               3               47 
$`CCDC73 MUTATED`
TCGA-05-5423 TCGA-38-4625 TCGA-44-6147 TCGA-49-4488 TCGA-50-5049 TCGA-50-5051 
        4.96        97.74         7.76        28.57        48.82        14.96 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-91-6829 
       12.16        48.62         2.86        41.33 

$`CCDC73 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       11.05         6.21        33.37        23.05        38.73        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  CCDC73 MUTATED CCDC73 WILD-TYPE 
            2.86             0.07 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
           97.74           120.79 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
          21.765           14.070 
[1] "2.9 - 97.7 (21.8)"  "0.1 - 120.8 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
[1] "hr=" "1.8"
D36V2, continuous
D36V3, binary
                  cls
clus                0  1
  CCDC73 MUTATED    7  4
  CCDC73 WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      7    4
  CCDC73 WILD-TYPE   86   75
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D36V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CCDC73 MUTATED                            0                                 1
  CCDC73 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CCDC73 MUTATED                                                    7
  CCDC73 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CCDC73 MUTATED                                            0
  CCDC73 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CCDC73 MUTATED                                               1
  CCDC73 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CCDC73 MUTATED                                1
  CCDC73 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CCDC73 MUTATED                                    0
  CCDC73 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CCDC73 MUTATED                              0                             1
  CCDC73 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CCDC73 MUTATED                                               0
  CCDC73 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CCDC73 MUTATED                              0
  CCDC73 WILD-TYPE                            2
D36V5, multiclass
D36V6, binary
                  cls
clus                 0   1
  CCDC73 MUTATED     0  11
  CCDC73 WILD-TYPE  12 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      0   11
  CCDC73 WILD-TYPE   12  149
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  NO               0               12
  YES             11              149
D36V7, continuous
D36V8, continuous
                  vv
clus                M0  M1  MX
  CCDC73 MUTATED     9   0   2
  CCDC73 WILD-TYPE 129   9  21
D36V9, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  M0              9              129
  M1              0                9
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  CCDC73 MUTATED    5  2  3  0  1
  CCDC73 WILD-TYPE 90 35 31  1  3
D36V10, multiclass
                  vv
clus                R0  R1  R2  RX
  CCDC73 MUTATED     5   0   1   0
  CCDC73 WILD-TYPE 100   5   3  10
D36V11, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  R0              5              100
  R1              0                5
  R2              1                3
  RX              0               10
D36V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CCDC73 MUTATED          5        2         0         1          3          0
  CCDC73 WILD-TYPE       32       50        10        23         30          6
                  vv
clus               STAGE IV
  CCDC73 MUTATED          0
  CCDC73 WILD-TYPE        9
D36V13, multiclass

Clustering(37) Variable = MGA MUTATION ANALYSIS
D37V1, survival
               sevent
clus2            0  1
  MGA MUTATED    9  6
  MGA WILD-TYPE 94 44
  MGA MUTATED MGA WILD-TYPE 
           15           138 
  MGA MUTATED MGA WILD-TYPE 
            6            44 
$`MGA MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4418 TCGA-05-5715 TCGA-35-5375 TCGA-38-4628 
        9.96        20.05         8.98         2.04         8.68        49.02 
TCGA-44-2655 TCGA-49-4494 TCGA-49-6743 TCGA-49-6745 TCGA-50-5931 TCGA-55-6712 
       18.87        35.54        12.13         4.93         8.78         0.79 
TCGA-64-5779 TCGA-73-4668 TCGA-91-6829 
       16.67        15.35        41.33 

$`MGA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        2.96         0.99         0.46         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
      120.79        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 
       29.75        43.20        15.02        12.99        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  MGA MUTATED MGA WILD-TYPE 
         0.79          0.07 
  MGA MUTATED MGA WILD-TYPE 
        49.02        120.79 
  MGA MUTATED MGA WILD-TYPE 
       12.130        14.945 
[1] "0.8 - 49.0 (12.1)"  "0.1 - 120.8 (14.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
[1] "hr=" "1.7"
D37V2, continuous
D37V3, binary
               cls
clus             0  1
  MGA MUTATED    7  9
  MGA WILD-TYPE 86 70
[1] "tbl2"
               cls
clus            [,1] [,2]
  MGA MUTATED      7    9
  MGA WILD-TYPE   86   70
        clus
vv       MGA MUTATED MGA WILD-TYPE
  FEMALE           7            86
  MALE             9            70
D37V4, continuous
[1] "Remove cluster labels:" "MGA MUTATED"           
clus
  MGA MUTATED MGA WILD-TYPE 
            2            10 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4676    TCGA-75-5122 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MGA MUTATED                            1                                 5
  MGA WILD-TYPE                          1                                34
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MGA MUTATED                                                    6
  MGA WILD-TYPE                                                108
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MGA MUTATED                                            0
  MGA WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MGA MUTATED                                               1
  MGA WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  MGA MUTATED                                1
  MGA WILD-TYPE                              1
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  MGA MUTATED                                    1                            0
  MGA WILD-TYPE                                  1                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  MGA MUTATED                               1
  MGA WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MGA MUTATED                                               0
  MGA WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  MGA MUTATED                              0
  MGA WILD-TYPE                            2
D37V5, multiclass
D37V6, binary
               cls
clus              0   1
  MGA MUTATED     1  15
  MGA WILD-TYPE  11 145
[1] "tbl2"
               cls
clus            [,1] [,2]
  MGA MUTATED      1   15
  MGA WILD-TYPE   11  145
     clus
vv    MGA MUTATED MGA WILD-TYPE
  NO            1            11
  YES          15           145
D37V7, continuous
D37V8, continuous
               vv
clus             M0  M1  MX
  MGA MUTATED    12   0   4
  MGA WILD-TYPE 126   9  19
D37V9, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  M0          12           126
  M1           0             9
  MX           4            19
               vv
clus            N0 N1 N2 N3 NX
  MGA MUTATED    5  5  6  0  0
  MGA WILD-TYPE 90 32 28  1  4
D37V10, multiclass
               vv
clus            R0 R1 R2 RX
  MGA MUTATED   12  0  0  0
  MGA WILD-TYPE 93  5  4 10
D37V11, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  R0          12            93
  R1           0             5
  R2           0             4
  RX           0            10
D37V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MGA MUTATED          1        4         2         2          6          1
  MGA WILD-TYPE       36       48         8        22         27          5
               vv
clus            STAGE IV
  MGA MUTATED          0
  MGA WILD-TYPE        9
D37V13, multiclass

Clustering(38) Variable = IFNA7 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2               0   1
  IFNA7 MUTATED     3   2
  IFNA7 WILD-TYPE 100  48
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             148 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              2              48 
$`IFNA7 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-44-2659 TCGA-44-6774 
        9.96        24.03        30.02        17.39         5.42 

$`IFNA7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  IFNA7 MUTATED IFNA7 WILD-TYPE 
           5.42            0.07 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
          30.02          120.79 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
          17.39           14.50 
[1] "5.4 - 30.0 (17.4)"  "0.1 - 120.8 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6836 
"IFNA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6836 
"IFNA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6836 
"IFNA7 WILD-TYPE" 
[1] "hr=" "1.7"
D38V2, continuous
D38V3, binary
                 cls
clus               0  1
  IFNA7 MUTATED    2  3
  IFNA7 WILD-TYPE 91 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFNA7 MUTATED      2    3
  IFNA7 WILD-TYPE   91   76
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  FEMALE             2              91
  MALE               3              76
D38V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  IFNA7 MUTATED                            0                                 3
  IFNA7 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IFNA7 MUTATED                                                    2
  IFNA7 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IFNA7 MUTATED                                            0
  IFNA7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IFNA7 MUTATED                                               0
  IFNA7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  IFNA7 MUTATED                                0
  IFNA7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  IFNA7 MUTATED                                    0
  IFNA7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IFNA7 MUTATED                              0                             0
  IFNA7 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IFNA7 MUTATED                                               0
  IFNA7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  IFNA7 MUTATED                              0
  IFNA7 WILD-TYPE                            2
D38V5, multiclass
D38V6, binary
                 cls
clus                0   1
  IFNA7 MUTATED     0   5
  IFNA7 WILD-TYPE  12 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFNA7 MUTATED      0    5
  IFNA7 WILD-TYPE   12  155
     clus
vv    IFNA7 MUTATED IFNA7 WILD-TYPE
  NO              0              12
  YES             5             155
D38V7, continuous
D38V8, continuous
                 vv
clus               M0  M1  MX
  IFNA7 MUTATED     5   0   0
  IFNA7 WILD-TYPE 133   9  23
D38V9, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  IFNA7 MUTATED    1  3  1  0  0
  IFNA7 WILD-TYPE 94 34 33  1  4
D38V10, multiclass
                 vv
clus               R0  R1  R2  RX
  IFNA7 MUTATED     3   1   0   0
  IFNA7 WILD-TYPE 102   4   4  10
D38V11, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  R0             3             102
  R1             1               4
  R2             0               4
  RX             0              10
D38V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  IFNA7 MUTATED          0        0         0         3          1          1
  IFNA7 WILD-TYPE       37       52        10        21         32          5
                 vv
clus              STAGE IV
  IFNA7 MUTATED          0
  IFNA7 WILD-TYPE        9
D38V13, multiclass

Clustering(39) Variable = FANCD2 MUTATION ANALYSIS
D39V1, survival
                  sevent
clus2               0  1
  FANCD2 MUTATED    5  2
  FANCD2 WILD-TYPE 98 48
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              146 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               2               48 
$`FANCD2 MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-2659 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        9.96        19.10        17.39         3.19         8.09        10.22 
TCGA-64-1680 
       37.02 

$`FANCD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-3398 
       18.87        13.15         3.39        15.78        13.15         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        39.09        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  FANCD2 MUTATED FANCD2 WILD-TYPE 
            3.19             0.07 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
           37.02           120.79 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
          10.220           14.945 
[1] "3.2 - 37.0 (10.2)"  "0.1 - 120.8 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED"   "FANCD2 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6836 
"FANCD2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED"   "FANCD2 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6836 
"FANCD2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED"   "FANCD2 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6836 
"FANCD2 WILD-TYPE" 
[1] "hr=" "1.5"
D39V2, continuous
D39V3, binary
                  cls
clus                0  1
  FANCD2 MUTATED    2  5
  FANCD2 WILD-TYPE 91 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FANCD2 MUTATED      2    5
  FANCD2 WILD-TYPE   91   74
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  FEMALE              2               91
  MALE                5               74
D39V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FANCD2 MUTATED                            0                                 2
  FANCD2 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FANCD2 MUTATED                                                    5
  FANCD2 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FANCD2 MUTATED                                            0
  FANCD2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FANCD2 MUTATED                                               0
  FANCD2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FANCD2 MUTATED                                0
  FANCD2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FANCD2 MUTATED                                    0
  FANCD2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FANCD2 MUTATED                              0                             0
  FANCD2 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FANCD2 MUTATED                                               0
  FANCD2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  FANCD2 MUTATED                              0
  FANCD2 WILD-TYPE                            2
D39V5, multiclass
D39V6, binary
                  cls
clus                 0   1
  FANCD2 MUTATED     1   6
  FANCD2 WILD-TYPE  11 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FANCD2 MUTATED      1    6
  FANCD2 WILD-TYPE   11  154
     clus
vv    FANCD2 MUTATED FANCD2 WILD-TYPE
  NO               1               11
  YES              6              154
D39V7, continuous
D39V8, continuous
                  vv
clus                M0  M1  MX
  FANCD2 MUTATED     6   1   0
  FANCD2 WILD-TYPE 132   8  23
D39V9, multiclass
    clus
vv   FANCD2 MUTATED FANCD2 WILD-TYPE
  M0              6              132
  M1              1                8
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  FANCD2 MUTATED    3  2  2  0  0
  FANCD2 WILD-TYPE 92 35 32  1  4
D39V10, multiclass
                  vv
clus               R0 R1 R2 RX
  FANCD2 MUTATED    6  0  0  0
  FANCD2 WILD-TYPE 99  5  4 10
D39V11, multiclass
    clus
vv   FANCD2 MUTATED FANCD2 WILD-TYPE
  R0              6               99
  R1              0                5
  R2              0                4
  RX              0               10
D39V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FANCD2 MUTATED          0        3         0         1          1          1
  FANCD2 WILD-TYPE       37       49        10        23         32          5
                  vv
clus               STAGE IV
  FANCD2 MUTATED          1
  FANCD2 WILD-TYPE        8
D39V13, multiclass

Clustering(40) Variable = MBD1 MUTATION ANALYSIS
D40V1, survival
                sevent
clus2              0   1
  MBD1 MUTATED     3   2
  MBD1 WILD-TYPE 100  48
  MBD1 MUTATED MBD1 WILD-TYPE 
             5            148 
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             48 
$`MBD1 MUTATED`
TCGA-49-4487 TCGA-55-1592 TCGA-55-5899 TCGA-67-3771 TCGA-73-4662 
       28.11        23.05         2.86        20.02        29.95 

$`MBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        4.60        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MBD1 MUTATED MBD1 WILD-TYPE 
          2.86           0.07 
  MBD1 MUTATED MBD1 WILD-TYPE 
         29.95         120.79 
  MBD1 MUTATED MBD1 WILD-TYPE 
        23.050         14.055 
[1] "2.9 - 29.9 (23.1)"  "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
[1] "hr=" "1.5"
D40V2, continuous
D40V3, binary
                cls
clus              0  1
  MBD1 MUTATED    3  3
  MBD1 WILD-TYPE 90 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      3    3
  MBD1 WILD-TYPE   90   76
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  FEMALE            3             90
  MALE              3             76
D40V4, continuous
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MBD1 MUTATED                            0                                 0
  MBD1 WILD-TYPE                          2                                39
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MBD1 MUTATED                                                    6
  MBD1 WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MBD1 MUTATED                                            0
  MBD1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MBD1 MUTATED                                               0
  MBD1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MBD1 MUTATED                                0
  MBD1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MBD1 MUTATED                                    0
  MBD1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MBD1 MUTATED                              0                             0
  MBD1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MBD1 MUTATED                                               0
  MBD1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MBD1 MUTATED                              0
  MBD1 WILD-TYPE                            2
D40V5, multiclass
D40V6, binary
                cls
clus               0   1
  MBD1 MUTATED     0   6
  MBD1 WILD-TYPE  12 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      0    6
  MBD1 WILD-TYPE   12  154
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  NO             0             12
  YES            6            154
D40V7, continuous
D40V8, continuous
                vv
clus              M0  M1  MX
  MBD1 MUTATED     6   0   0
  MBD1 WILD-TYPE 132   9  23
D40V9, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  M0            6            132
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  MBD1 MUTATED    5  1  0  0  0
  MBD1 WILD-TYPE 90 36 34  1  4
D40V10, multiclass
                vv
clus             R0 R1 R2 RX
  MBD1 MUTATED    6  0  0  0
  MBD1 WILD-TYPE 99  5  4 10
D40V11, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  R0            6             99
  R1            0              5
  R2            0              4
  RX            0             10
D40V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MBD1 MUTATED          5        1         0         0          0          0
  MBD1 WILD-TYPE       32       51        10        24         33          6
                vv
clus             STAGE IV
  MBD1 MUTATED          0
  MBD1 WILD-TYPE        9
D40V13, multiclass

Clustering(41) Variable = SVOP MUTATION ANALYSIS
D41V1, survival
                sevent
clus2             0  1
  SVOP MUTATED    4  2
  SVOP WILD-TYPE 99 48
  SVOP MUTATED SVOP WILD-TYPE 
             6            147 
  SVOP MUTATED SVOP WILD-TYPE 
             2             48 
$`SVOP MUTATED`
TCGA-05-4398 TCGA-05-4418 TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-55-6712 
       47.05         8.98        26.01         8.68        28.11         0.79 

$`SVOP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SVOP MUTATED SVOP WILD-TYPE 
          0.79           0.07 
  SVOP MUTATED SVOP WILD-TYPE 
         47.05         120.79 
  SVOP MUTATED SVOP WILD-TYPE 
        17.495         14.930 
[1] "0.8 - 47.0 (17.5)"  "0.1 - 120.8 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6836 
"SVOP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6836 
"SVOP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6836 
"SVOP WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, binary
                cls
clus              0  1
  SVOP MUTATED    3  4
  SVOP WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  SVOP MUTATED      3    4
  SVOP WILD-TYPE   90   75
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D41V4, continuous
[1] "Remove cluster labels:" "SVOP MUTATED"          
clus
  SVOP MUTATED SVOP WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-64-1677     TCGA-64-5778 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SVOP MUTATED                            0                                 4
  SVOP WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SVOP MUTATED                                                    3
  SVOP WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SVOP MUTATED                                            0
  SVOP WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SVOP MUTATED                                               0
  SVOP WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SVOP MUTATED                                0
  SVOP WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SVOP MUTATED                                    0
  SVOP WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SVOP MUTATED                              0                             0
  SVOP WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SVOP MUTATED                                               0
  SVOP WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SVOP MUTATED                              0
  SVOP WILD-TYPE                            2
D41V5, multiclass
D41V6, binary
                cls
clus               0   1
  SVOP MUTATED     0   7
  SVOP WILD-TYPE  12 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  SVOP MUTATED      0    7
  SVOP WILD-TYPE   12  153
     clus
vv    SVOP MUTATED SVOP WILD-TYPE
  NO             0             12
  YES            7            153
D41V7, continuous
D41V8, continuous
                vv
clus              M0  M1  MX
  SVOP MUTATED     6   0   1
  SVOP WILD-TYPE 132   9  22
D41V9, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  M0            6            132
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  SVOP MUTATED    2  2  2  1  0
  SVOP WILD-TYPE 93 35 32  0  4
D41V10, multiclass
                vv
clus              R0  R1  R2  RX
  SVOP MUTATED     5   0   0   1
  SVOP WILD-TYPE 100   5   4   9
D41V11, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  R0            5            100
  R1            0              5
  R2            0              4
  RX            1              9
D41V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SVOP MUTATED          1        1         1         1          2          1
  SVOP WILD-TYPE       36       51         9        23         31          5
                vv
clus             STAGE IV
  SVOP MUTATED          0
  SVOP WILD-TYPE        9
D41V13, multiclass

Clustering(42) Variable = FAM48B1 MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  FAM48B1 MUTATED    6  3
  FAM48B1 WILD-TYPE 97 47
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                9               144 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                3                47 
$`FAM48B1 MUTATED`
TCGA-05-4427 TCGA-35-4123 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2661 
       26.01         5.95        49.02        11.64        13.15         3.39 
TCGA-50-5931 TCGA-64-1678 TCGA-73-4666 
        8.78        39.09        20.28 

$`FAM48B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        7.36         8.68        97.74       120.79        37.71        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       35.28        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
             3.39              0.07 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            49.02            120.79 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
           13.150            14.945 
[1] "3.4 - 49.0 (13.2)"  "0.1 - 120.8 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
D42V3, binary
                   cls
clus                 0  1
  FAM48B1 MUTATED    8  2
  FAM48B1 WILD-TYPE 85 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      8    2
  FAM48B1 WILD-TYPE   85   77
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  FEMALE               8                85
  MALE                 2                77
D42V4, continuous
[1] "Remove cluster labels:" "FAM48B1 MUTATED"       
clus
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  FAM48B1 MUTATED                            0
  FAM48B1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  FAM48B1 MUTATED                                   1
  FAM48B1 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM48B1 MUTATED                                                    9
  FAM48B1 WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FAM48B1 MUTATED                                            0
  FAM48B1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FAM48B1 MUTATED                                               0
  FAM48B1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  FAM48B1 MUTATED                                0
  FAM48B1 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  FAM48B1 MUTATED                                    0
  FAM48B1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FAM48B1 MUTATED                              0                             0
  FAM48B1 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FAM48B1 MUTATED                                               0
  FAM48B1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  FAM48B1 MUTATED                              0
  FAM48B1 WILD-TYPE                            2
D42V5, multiclass
D42V6, binary
                   cls
clus                  0   1
  FAM48B1 MUTATED     1   9
  FAM48B1 WILD-TYPE  11 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      1    9
  FAM48B1 WILD-TYPE   11  151
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  NO                1                11
  YES               9               151
D42V7, continuous
D42V8, continuous
                   vv
clus                 M0  M1  MX
  FAM48B1 MUTATED     9   1   0
  FAM48B1 WILD-TYPE 129   8  23
D42V9, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  M0               9               129
  M1               1                 8
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  FAM48B1 MUTATED    7  2  0  0  1
  FAM48B1 WILD-TYPE 88 35 34  1  3
D42V10, multiclass
                   vv
clus                R0 R1 R2 RX
  FAM48B1 MUTATED   10  0  0  0
  FAM48B1 WILD-TYPE 95  5  4 10
D42V11, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  R0              10                95
  R1               0                 5
  R2               0                 4
  RX               0                10
D42V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FAM48B1 MUTATED          2        4         1         2          0          0
  FAM48B1 WILD-TYPE       35       48         9        22         33          6
                   vv
clus                STAGE IV
  FAM48B1 MUTATED          1
  FAM48B1 WILD-TYPE        8
D42V13, multiclass

Clustering(43) Variable = FGB MUTATION ANALYSIS
D43V1, survival
               sevent
clus2            0  1
  FGB MUTATED    7  3
  FGB WILD-TYPE 96 47
  FGB MUTATED FGB WILD-TYPE 
           10           143 
  FGB MUTATED FGB WILD-TYPE 
            3            47 
$`FGB MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-38-4626 TCGA-44-2656 TCGA-44-6778 TCGA-49-4506 
        9.96        30.02       120.79        19.10        36.49        32.84 
TCGA-50-5044 TCGA-50-5941 TCGA-50-5942 TCGA-64-1676 
       20.48         9.37         4.44        56.81 

$`FGB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        32.45        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 
       77.88        21.47         8.45        15.12        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FGB MUTATED FGB WILD-TYPE 
         4.44          0.07 
  FGB MUTATED FGB WILD-TYPE 
       120.79         97.74 
  FGB MUTATED FGB WILD-TYPE 
        25.25         14.04 
[1] "4.4 - 120.8 (25.2)" "0.1 - 97.7 (14.0)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
[1] "hr=" "1.9"
D43V2, continuous
D43V3, binary
               cls
clus             0  1
  FGB MUTATED    6  5
  FGB WILD-TYPE 87 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      6    5
  FGB WILD-TYPE   87   74
        clus
vv       FGB MUTATED FGB WILD-TYPE
  FEMALE           6            87
  MALE             5            74
D43V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FGB MUTATED                            0                                 2
  FGB WILD-TYPE                          2                                37
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FGB MUTATED                                                    8
  FGB WILD-TYPE                                                106
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FGB MUTATED                                            0
  FGB WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FGB MUTATED                                               0
  FGB WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  FGB MUTATED                                0
  FGB WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  FGB MUTATED                                    0                            0
  FGB WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  FGB MUTATED                               1
  FGB WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FGB MUTATED                                               0
  FGB WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  FGB MUTATED                              0
  FGB WILD-TYPE                            2
D43V5, multiclass
D43V6, binary
               cls
clus              0   1
  FGB MUTATED     1  10
  FGB WILD-TYPE  11 150
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      1   10
  FGB WILD-TYPE   11  150
     clus
vv    FGB MUTATED FGB WILD-TYPE
  NO            1            11
  YES          10           150
D43V7, continuous
D43V8, continuous
               vv
clus             M0  M1  MX
  FGB MUTATED    10   0   1
  FGB WILD-TYPE 128   9  22
D43V9, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  M0          10           128
  M1           0             9
  MX           1            22
               vv
clus            N0 N1 N2 N3 NX
  FGB MUTATED    6  3  2  0  0
  FGB WILD-TYPE 89 34 32  1  4
D43V10, multiclass
               vv
clus             R0  R1  R2  RX
  FGB MUTATED     3   2   1   0
  FGB WILD-TYPE 102   3   3  10
D43V11, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  R0           3           102
  R1           2             3
  R2           1             3
  RX           0            10
D43V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FGB MUTATED          2        1         1         2          2          2
  FGB WILD-TYPE       35       51         9        22         31          4
               vv
clus            STAGE IV
  FGB MUTATED          0
  FGB WILD-TYPE        9
D43V13, multiclass

Clustering(44) Variable = FLI1 MUTATION ANALYSIS
D44V1, survival
                sevent
clus2             0  1
  FLI1 MUTATED    5  1
  FLI1 WILD-TYPE 98 49
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            147 
  FLI1 MUTATED FLI1 WILD-TYPE 
             1             49 
$`FLI1 MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-44-2661 TCGA-44-3398 TCGA-44-3918 TCGA-50-5045 
       29.95        30.02         3.39         8.32         6.44        71.47 

$`FLI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
        2.96        14.93         8.98        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.09        10.22         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        12.99         4.93        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  FLI1 MUTATED FLI1 WILD-TYPE 
          3.39           0.07 
  FLI1 MUTATED FLI1 WILD-TYPE 
         71.47         120.79 
  FLI1 MUTATED FLI1 WILD-TYPE 
        19.135         14.930 
[1] "3.4 - 71.5 (19.1)"  "0.1 - 120.8 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
[1] "hr=" "2.5"
D44V2, continuous
D44V3, binary
                cls
clus              0  1
  FLI1 MUTATED    4  2
  FLI1 WILD-TYPE 89 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      4    2
  FLI1 WILD-TYPE   89   77
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D44V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FLI1 MUTATED                            0                                 2
  FLI1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FLI1 MUTATED                                                    4
  FLI1 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FLI1 MUTATED                                            0
  FLI1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FLI1 MUTATED                                               0
  FLI1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FLI1 MUTATED                                0
  FLI1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FLI1 MUTATED                                    0
  FLI1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FLI1 MUTATED                              0                             0
  FLI1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FLI1 MUTATED                                               0
  FLI1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  FLI1 MUTATED                              0
  FLI1 WILD-TYPE                            2
D44V5, multiclass
D44V6, binary
                cls
clus               0   1
  FLI1 MUTATED     1   5
  FLI1 WILD-TYPE  11 155
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      1    5
  FLI1 WILD-TYPE   11  155
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  NO             1             11
  YES            5            155
D44V7, continuous
D44V8, continuous
                vv
clus              M0  M1  MX
  FLI1 MUTATED     6   0   0
  FLI1 WILD-TYPE 132   9  23
D44V9, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  M0            6            132
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  FLI1 MUTATED    5  1  0  0  0
  FLI1 WILD-TYPE 90 36 34  1  4
D44V10, multiclass
                vv
clus              R0  R1  R2  RX
  FLI1 MUTATED     4   1   0   0
  FLI1 WILD-TYPE 101   4   4  10
D44V11, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  R0            4            101
  R1            1              4
  R2            0              4
  RX            0             10
D44V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FLI1 MUTATED          4        1         0         1          0          0
  FLI1 WILD-TYPE       33       51        10        23         33          6
                vv
clus             STAGE IV
  FLI1 MUTATED          0
  FLI1 WILD-TYPE        9
D44V13, multiclass

Clustering(45) Variable = LAX1 MUTATION ANALYSIS
D45V1, survival
                sevent
clus2             0  1
  LAX1 MUTATED    4  0
  LAX1 WILD-TYPE 99 50
  LAX1 MUTATED LAX1 WILD-TYPE 
             4            149 
  LAX1 MUTATED LAX1 WILD-TYPE 
             0             50 
$`LAX1 MUTATED`
TCGA-05-4382 TCGA-38-4626 TCGA-44-2659 TCGA-67-3770 
       19.92       120.79        17.39         0.99 

$`LAX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  LAX1 MUTATED LAX1 WILD-TYPE 
          0.99           0.07 
  LAX1 MUTATED LAX1 WILD-TYPE 
        120.79          97.74 
  LAX1 MUTATED LAX1 WILD-TYPE 
        18.655         14.070 
[1] "1.0 - 120.8 (18.7)" "0.1 - 97.7 (14.1)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6836 
"LAX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6836 
"LAX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6836 
"LAX1 WILD-TYPE" 
[1] "hr="     "2.8e+07"
D45V2, continuous
D45V3, binary
                cls
clus              0  1
  LAX1 MUTATED    4  2
  LAX1 WILD-TYPE 89 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  LAX1 MUTATED      4    2
  LAX1 WILD-TYPE   89   77
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D45V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LAX1 MUTATED                            0                                 1
  LAX1 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LAX1 MUTATED                                                    5
  LAX1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LAX1 MUTATED                                            0
  LAX1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LAX1 MUTATED                                               0
  LAX1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  LAX1 MUTATED                                0
  LAX1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  LAX1 MUTATED                                    0
  LAX1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LAX1 MUTATED                              0                             0
  LAX1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LAX1 MUTATED                                               0
  LAX1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  LAX1 MUTATED                              0
  LAX1 WILD-TYPE                            2
D45V5, multiclass
D45V6, binary
                cls
clus               0   1
  LAX1 MUTATED     0   6
  LAX1 WILD-TYPE  12 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  LAX1 MUTATED      0    6
  LAX1 WILD-TYPE   12  154
     clus
vv    LAX1 MUTATED LAX1 WILD-TYPE
  NO             0             12
  YES            6            154
D45V7, continuous
D45V8, continuous
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-44-2655     TCGA-44-2656 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2662     TCGA-44-2666     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6147 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-55-1592     TCGA-55-1594 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
                vv
clus              M0  M1  MX
  LAX1 MUTATED     5   0   1
  LAX1 WILD-TYPE 133   9  22
D45V9, multiclass
    clus
vv   LAX1 MUTATED LAX1 WILD-TYPE
  M0            5            133
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  LAX1 MUTATED    5  1  0  0  0
  LAX1 WILD-TYPE 90 36 34  1  4
D45V10, multiclass
                vv
clus             R0 R1 R2 RX
  LAX1 MUTATED    6  0  0  0
  LAX1 WILD-TYPE 99  5  4 10
D45V11, multiclass
    clus
vv   LAX1 MUTATED LAX1 WILD-TYPE
  R0            6             99
  R1            0              5
  R2            0              4
  RX            0             10
D45V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LAX1 MUTATED          1        2         1         2          0          0
  LAX1 WILD-TYPE       36       50         9        22         33          6
                vv
clus             STAGE IV
  LAX1 MUTATED          0
  LAX1 WILD-TYPE        9
D45V13, multiclass

Clustering(46) Variable = COL19A1 MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                0  1
  COL19A1 MUTATED    8  5
  COL19A1 WILD-TYPE 95 45
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               13               140 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
                5                45 
$`COL19A1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-38-4625 TCGA-49-6743 TCGA-50-5931 
       37.02         9.96        26.01        97.74        12.13         8.78 
TCGA-50-6594 TCGA-64-1677 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-71-6725 
       12.16        20.65        30.44        39.52         7.33         2.01 
TCGA-91-6829 
       41.33 

$`COL19A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 
       39.09        37.02        83.84         0.10        16.67         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  COL19A1 MUTATED COL19A1 WILD-TYPE 
             2.01              0.07 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
            97.74            120.79 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
            20.65             14.50 
[1] "2.0 - 97.7 (20.6)"  "0.1 - 120.8 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-91-6836 
"COL19A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-91-6836 
"COL19A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-91-6836 
"COL19A1 WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
D46V3, binary
                   cls
clus                 0  1
  COL19A1 MUTATED   10  4
  COL19A1 WILD-TYPE 83 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL19A1 MUTATED     10    4
  COL19A1 WILD-TYPE   83   75
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  FEMALE              10                83
  MALE                 4                75
D46V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  COL19A1 MUTATED                            0
  COL19A1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL19A1 MUTATED                                   5
  COL19A1 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL19A1 MUTATED                                                    5
  COL19A1 WILD-TYPE                                                109
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL19A1 MUTATED                                            0
  COL19A1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL19A1 MUTATED                                               2
  COL19A1 WILD-TYPE                                             0
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  COL19A1 MUTATED                                1
  COL19A1 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  COL19A1 MUTATED                                    0
  COL19A1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL19A1 MUTATED                              0                             1
  COL19A1 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL19A1 MUTATED                                               0
  COL19A1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  COL19A1 MUTATED                              0
  COL19A1 WILD-TYPE                            2
D46V5, multiclass
D46V6, binary
                   cls
clus                  0   1
  COL19A1 MUTATED     0  14
  COL19A1 WILD-TYPE  12 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL19A1 MUTATED      0   14
  COL19A1 WILD-TYPE   12  146
     clus
vv    COL19A1 MUTATED COL19A1 WILD-TYPE
  NO                0                12
  YES              14               146
D46V7, continuous
D46V8, continuous
                   vv
clus                 M0  M1  MX
  COL19A1 MUTATED    12   0   2
  COL19A1 WILD-TYPE 126   9  21
D46V9, multiclass
    clus
vv   COL19A1 MUTATED COL19A1 WILD-TYPE
  M0              12               126
  M1               0                 9
  MX               2                21
                   vv
clus                N0 N1 N2 N3 NX
  COL19A1 MUTATED    8  3  3  0  0
  COL19A1 WILD-TYPE 87 34 31  1  4
D46V10, multiclass
                   vv
clus                R0 R1 R2 RX
  COL19A1 MUTATED   10  0  0  1
  COL19A1 WILD-TYPE 95  5  4  9
D46V11, multiclass
    clus
vv   COL19A1 MUTATED COL19A1 WILD-TYPE
  R0              10                95
  R1               0                 5
  R2               0                 4
  RX               1                 9
D46V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL19A1 MUTATED          1        7         0         2          3          1
  COL19A1 WILD-TYPE       36       45        10        22         30          5
                   vv
clus                STAGE IV
  COL19A1 MUTATED          0
  COL19A1 WILD-TYPE        9
D46V13, multiclass

Clustering(47) Variable = MLL3 MUTATION ANALYSIS
D47V1, survival
                sevent
clus2             0  1
  MLL3 MUTATED   17 14
  MLL3 WILD-TYPE 86 36
  MLL3 MUTATED MLL3 WILD-TYPE 
            31            122 
  MLL3 MUTATED MLL3 WILD-TYPE 
            14             36 
$`MLL3 MUTATED`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       38.07        14.01         9.96        24.03        30.02        26.01 
TCGA-05-4434 TCGA-35-4123 TCGA-38-4628 TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 
       15.02         5.95        49.02        44.61        19.10        13.15 
TCGA-44-3396 TCGA-44-6777 TCGA-49-4506 TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 
       10.22        32.45        32.84        12.99        71.47        48.82 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5939 TCGA-50-6594 TCGA-64-1677 TCGA-64-1678 
        9.27         8.78        15.12        12.16        20.65        39.09 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-6217 TCGA-71-6725 TCGA-91-6829 
       39.52         0.99        20.02        13.87         2.01        41.33 
TCGA-91-6836 
        0.36 

$`MLL3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        45.01        37.02        47.05         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        7.36         8.68        97.74       120.79        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 
       35.28        11.64         5.19        18.87        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 
       43.20        15.02        12.13         4.93        20.48        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5932 TCGA-50-5933 
       25.81         9.76        49.28         8.05        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       32.61         0.79        56.81        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       30.44        16.67         7.33        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        5.29         4.60        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  MLL3 MUTATED MLL3 WILD-TYPE 
          0.36           0.07 
  MLL3 MUTATED MLL3 WILD-TYPE 
         71.47         120.79 
  MLL3 MUTATED MLL3 WILD-TYPE 
        19.100         13.595 
[1] "0.4 - 71.5 (19.1)"  "0.1 - 120.8 (13.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6836 
  "MLL3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6836 
  "MLL3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6836 
  "MLL3 MUTATED" 
[1] "hr=" "1.3"
D47V2, continuous
D47V3, binary
                cls
clus              0  1
  MLL3 MUTATED   20 14
  MLL3 WILD-TYPE 73 65
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED     20   14
  MLL3 WILD-TYPE   73   65
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  FEMALE           20             73
  MALE             14             65
D47V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MLL3 MUTATED                            0                                10
  MLL3 WILD-TYPE                          2                                29
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MLL3 MUTATED                                                   21
  MLL3 WILD-TYPE                                                 93
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MLL3 MUTATED                                            0
  MLL3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MLL3 MUTATED                                               1
  MLL3 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MLL3 MUTATED                                0
  MLL3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MLL3 MUTATED                                    0
  MLL3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MLL3 MUTATED                              0                             2
  MLL3 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MLL3 MUTATED                                               0
  MLL3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MLL3 MUTATED                              0
  MLL3 WILD-TYPE                            2
D47V5, multiclass
D47V6, binary
                cls
clus               0   1
  MLL3 MUTATED     3  31
  MLL3 WILD-TYPE   9 129
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED      3   31
  MLL3 WILD-TYPE    9  129
     clus
vv    MLL3 MUTATED MLL3 WILD-TYPE
  NO             3              9
  YES           31            129
D47V7, continuous
D47V8, continuous
                vv
clus              M0  M1  MX
  MLL3 MUTATED    28   2   4
  MLL3 WILD-TYPE 110   7  19
D47V9, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  M0           28            110
  M1            2              7
  MX            4             19
                vv
clus             N0 N1 N2 N3 NX
  MLL3 MUTATED   16 10  6  0  2
  MLL3 WILD-TYPE 79 27 28  1  2
D47V10, multiclass
                vv
clus             R0 R1 R2 RX
  MLL3 MUTATED   18  2  2  3
  MLL3 WILD-TYPE 87  3  2  7
D47V11, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  R0           18             87
  R1            2              3
  R2            2              2
  RX            3              7
D47V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MLL3 MUTATED          6       11         2         6          6          1
  MLL3 WILD-TYPE       31       41         8        18         27          5
                vv
clus             STAGE IV
  MLL3 MUTATED          2
  MLL3 WILD-TYPE        7
D47V13, multiclass

Clustering(48) Variable = OVCH1 MUTATION ANALYSIS
D48V1, survival
                 sevent
clus2              0  1
  OVCH1 MUTATED    9  3
  OVCH1 WILD-TYPE 94 47
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             12             141 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
              3              47 
$`OVCH1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4625 TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 
       19.92         9.96        97.74         3.19         8.09         6.44 
TCGA-44-4112 TCGA-49-6742 TCGA-50-5066 TCGA-50-5933 TCGA-55-5899 TCGA-64-1678 
        4.60        15.02         9.76        77.88         2.86        39.09 

$`OVCH1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-3396 
       13.15        17.39         3.39        15.78        13.15        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       20.48        71.47        48.82        14.96        25.81        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OVCH1 MUTATED OVCH1 WILD-TYPE 
           2.86            0.07 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
          97.74          120.79 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
           9.86           14.96 
[1] "2.9 - 97.7 (9.9)"   "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED"   "OVCH1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6836 
"OVCH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED"   "OVCH1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6836 
"OVCH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED"   "OVCH1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6836 
"OVCH1 WILD-TYPE" 
[1] "hr=" "1.9"
D48V2, continuous
D48V3, binary
                 cls
clus               0  1
  OVCH1 MUTATED    5  9
  OVCH1 WILD-TYPE 88 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OVCH1 MUTATED      5    9
  OVCH1 WILD-TYPE   88   70
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  FEMALE             5              88
  MALE               9              70
D48V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OVCH1 MUTATED                            0                                 3
  OVCH1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OVCH1 MUTATED                                                    9
  OVCH1 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OVCH1 MUTATED                                            0
  OVCH1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OVCH1 MUTATED                                               0
  OVCH1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OVCH1 MUTATED                                0
  OVCH1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OVCH1 MUTATED                                    0
  OVCH1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OVCH1 MUTATED                              0                             1
  OVCH1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OVCH1 MUTATED                                               0
  OVCH1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OVCH1 MUTATED                              1
  OVCH1 WILD-TYPE                            1
D48V5, multiclass
D48V6, binary
                 cls
clus                0   1
  OVCH1 MUTATED     0  14
  OVCH1 WILD-TYPE  12 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OVCH1 MUTATED      0   14
  OVCH1 WILD-TYPE   12  146
     clus
vv    OVCH1 MUTATED OVCH1 WILD-TYPE
  NO              0              12
  YES            14             146
D48V7, continuous
D48V8, continuous
                 vv
clus               M0  M1  MX
  OVCH1 MUTATED    13   0   1
  OVCH1 WILD-TYPE 125   9  22
D48V9, multiclass
    clus
vv   OVCH1 MUTATED OVCH1 WILD-TYPE
  M0            13             125
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  OVCH1 MUTATED    9  3  2  0  0
  OVCH1 WILD-TYPE 86 34 32  1  4
D48V10, multiclass
                 vv
clus              R0 R1 R2 RX
  OVCH1 MUTATED   11  0  1  0
  OVCH1 WILD-TYPE 94  5  3 10
D48V11, multiclass
    clus
vv   OVCH1 MUTATED OVCH1 WILD-TYPE
  R0            11              94
  R1             0               5
  R2             1               3
  RX             0              10
D48V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OVCH1 MUTATED          2        7         1         1          1          2
  OVCH1 WILD-TYPE       35       45         9        23         32          4
                 vv
clus              STAGE IV
  OVCH1 MUTATED          0
  OVCH1 WILD-TYPE        9
D48V13, multiclass

Clustering(49) Variable = LRRC32 MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  LRRC32 MUTATED    9  2
  LRRC32 WILD-TYPE 94 48
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              142 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
               2               48 
$`LRRC32 MUTATED`
TCGA-05-4424 TCGA-44-2659 TCGA-44-4112 TCGA-44-6774 TCGA-50-6594 TCGA-55-5899 
       30.02        17.39         4.60         5.42        12.16         2.86 
TCGA-67-3771 TCGA-67-3774 TCGA-73-4666 TCGA-91-6828 TCGA-91-6829 
       20.02        12.66        20.28         1.22        41.33 

$`LRRC32 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99        18.84 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       14.04         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.28         1.15         0.36 

  LRRC32 MUTATED LRRC32 WILD-TYPE 
            1.22             0.07 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
           41.33           120.79 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
          12.660           14.945 
[1] "1.2 - 41.3 (12.7)"  "0.1 - 120.8 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "LRRC32 MUTATED"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-91-6836 
"LRRC32 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "LRRC32 MUTATED"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-91-6836 
"LRRC32 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "LRRC32 MUTATED"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-91-6836 
"LRRC32 WILD-TYPE" 
[1] "hr=" "1.1"
D49V2, continuous
D49V3, binary
                  cls
clus                0  1
  LRRC32 MUTATED    7  4
  LRRC32 WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC32 MUTATED      7    4
  LRRC32 WILD-TYPE   86   75
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D49V4, continuous
[1] "Remove cluster labels:" "LRRC32 MUTATED"        
clus
  LRRC32 MUTATED LRRC32 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRRC32 MUTATED                            0                                 1
  LRRC32 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRC32 MUTATED                                                    9
  LRRC32 WILD-TYPE                                                105
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRRC32 MUTATED                                            0
  LRRC32 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRRC32 MUTATED                                               1
  LRRC32 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  LRRC32 MUTATED                                0
  LRRC32 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  LRRC32 MUTATED                                    0
  LRRC32 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRRC32 MUTATED                              0                             0
  LRRC32 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRRC32 MUTATED                                               0
  LRRC32 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  LRRC32 MUTATED                              0
  LRRC32 WILD-TYPE                            2
D49V5, multiclass
D49V6, binary
                  cls
clus                 0   1
  LRRC32 MUTATED     1  10
  LRRC32 WILD-TYPE  11 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC32 MUTATED      1   10
  LRRC32 WILD-TYPE   11  150
     clus
vv    LRRC32 MUTATED LRRC32 WILD-TYPE
  NO               1               11
  YES             10              150
D49V7, continuous
D49V8, continuous
                  vv
clus                M0  M1  MX
  LRRC32 MUTATED     8   1   2
  LRRC32 WILD-TYPE 130   8  21
D49V9, multiclass
    clus
vv   LRRC32 MUTATED LRRC32 WILD-TYPE
  M0              8              130
  M1              1                8
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  LRRC32 MUTATED    7  2  2  0  0
  LRRC32 WILD-TYPE 88 35 32  1  4
D49V10, multiclass
                  vv
clus                R0  R1  R2  RX
  LRRC32 MUTATED     5   1   0   0
  LRRC32 WILD-TYPE 100   4   4  10
D49V11, multiclass
    clus
vv   LRRC32 MUTATED LRRC32 WILD-TYPE
  R0              5              100
  R1              1                4
  R2              0                4
  RX              0               10
D49V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LRRC32 MUTATED          3        3         0         2          2          0
  LRRC32 WILD-TYPE       34       49        10        22         31          6
                  vv
clus               STAGE IV
  LRRC32 MUTATED          1
  LRRC32 WILD-TYPE        8
D49V13, multiclass

Clustering(50) Variable = ANP32C MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2                0   1
  ANP32C MUTATED     3   5
  ANP32C WILD-TYPE 100  45
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              145 
  ANP32C MUTATED ANP32C WILD-TYPE 
               5               45 
$`ANP32C MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-44-6779 TCGA-50-5933 
       37.02         9.96        24.03        19.10        16.41        77.88 
TCGA-64-5778 TCGA-73-4659 
       30.44        23.38 

$`ANP32C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4398 
       38.07         3.98        19.92        14.01        45.01        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 
        5.42         2.70        63.72        32.45        36.49        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ANP32C MUTATED ANP32C WILD-TYPE 
            9.96             0.07 
  ANP32C MUTATED ANP32C WILD-TYPE 
           77.88           120.79 
  ANP32C MUTATED ANP32C WILD-TYPE 
          23.705           14.010 
[1] "10.0 - 77.9 (23.7)" "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ANP32C WILD-TYPE"   "ANP32C MUTATED"   "ANP32C MUTATED"   "ANP32C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6836 
"ANP32C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ANP32C WILD-TYPE"   "ANP32C MUTATED"   "ANP32C MUTATED"   "ANP32C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6836 
"ANP32C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ANP32C WILD-TYPE"   "ANP32C MUTATED"   "ANP32C MUTATED"   "ANP32C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6836 
"ANP32C WILD-TYPE" 
[1] "hr=" "1.3"
D50V2, continuous
D50V3, binary
                  cls
clus                0  1
  ANP32C MUTATED    2  6
  ANP32C WILD-TYPE 91 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANP32C MUTATED      2    6
  ANP32C WILD-TYPE   91   73
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  FEMALE              2               91
  MALE                6               73
D50V4, continuous
[1] "Remove cluster labels:" "ANP32C MUTATED"        
clus
  ANP32C MUTATED ANP32C WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANP32C MUTATED                            0                                 3
  ANP32C WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANP32C MUTATED                                                    4
  ANP32C WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANP32C MUTATED                                            0
  ANP32C WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANP32C MUTATED                                               1
  ANP32C WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ANP32C MUTATED                                0
  ANP32C WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ANP32C MUTATED                                    0
  ANP32C WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANP32C MUTATED                              0                             0
  ANP32C WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANP32C MUTATED                                               0
  ANP32C WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ANP32C MUTATED                              0
  ANP32C WILD-TYPE                            2
D50V5, multiclass
D50V6, binary
                  cls
clus                 0   1
  ANP32C MUTATED     0   8
  ANP32C WILD-TYPE  12 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANP32C MUTATED      0    8
  ANP32C WILD-TYPE   12  152
     clus
vv    ANP32C MUTATED ANP32C WILD-TYPE
  NO               0               12
  YES              8              152
D50V7, continuous
D50V8, continuous
                  vv
clus                M0  M1  MX
  ANP32C MUTATED     7   0   1
  ANP32C WILD-TYPE 131   9  22
D50V9, multiclass
    clus
vv   ANP32C MUTATED ANP32C WILD-TYPE
  M0              7              131
  M1              0                9
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  ANP32C MUTATED    3  3  2  0  0
  ANP32C WILD-TYPE 92 34 32  1  4
D50V10, multiclass
                  vv
clus                R0  R1  R2  RX
  ANP32C MUTATED     5   0   0   0
  ANP32C WILD-TYPE 100   5   4  10
D50V11, multiclass
    clus
vv   ANP32C MUTATED ANP32C WILD-TYPE
  R0              5              100
  R1              0                5
  R2              0                4
  RX              0               10
D50V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ANP32C MUTATED          0        3         0         2          1          2
  ANP32C WILD-TYPE       37       49        10        22         32          4
                  vv
clus               STAGE IV
  ANP32C MUTATED          0
  ANP32C WILD-TYPE        9
D50V13, multiclass

Clustering(51) Variable = OR10G9 MUTATION ANALYSIS
D51V1, survival
                  sevent
clus2               0  1
  OR10G9 MUTATED    6  4
  OR10G9 WILD-TYPE 97 46
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              143 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               4               46 
$`OR10G9 MUTATED`
TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-35-3615 TCGA-38-4632 TCGA-50-6590 
       47.05        30.02        26.01         0.46        44.61        42.31 
TCGA-50-6593 TCGA-55-1596 TCGA-55-6712 TCGA-64-5775 
       11.05        45.17         0.79         0.10 

$`OR10G9 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        12.00        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        2.96         0.99         2.04         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR10G9 MUTATED OR10G9 WILD-TYPE 
            0.10             0.07 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
           47.05           120.79 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
          28.015           14.070 
[1] "0.1 - 47.0 (28.0)"  "0.1 - 120.8 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6836 
"OR10G9 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6836 
"OR10G9 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6836 
"OR10G9 WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
                  cls
clus                0  1
  OR10G9 MUTATED    4  6
  OR10G9 WILD-TYPE 89 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      4    6
  OR10G9 WILD-TYPE   89   73
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D51V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10G9 MUTATED                            0                                 4
  OR10G9 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10G9 MUTATED                                                    6
  OR10G9 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10G9 MUTATED                                            0
  OR10G9 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10G9 MUTATED                                               0
  OR10G9 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10G9 MUTATED                                0
  OR10G9 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10G9 MUTATED                                    0
  OR10G9 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10G9 MUTATED                              0                             0
  OR10G9 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10G9 MUTATED                                               0
  OR10G9 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10G9 MUTATED                              0
  OR10G9 WILD-TYPE                            2
D51V5, multiclass
D51V6, binary
                  cls
clus                 0   1
  OR10G9 MUTATED     0  10
  OR10G9 WILD-TYPE  12 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      0   10
  OR10G9 WILD-TYPE   12  150
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  NO               0               12
  YES             10              150
D51V7, continuous
D51V8, continuous
                  vv
clus                M0  M1  MX
  OR10G9 MUTATED     8   1   1
  OR10G9 WILD-TYPE 130   8  22
D51V9, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  M0              8              130
  M1              1                8
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  OR10G9 MUTATED    4  4  1  1  0
  OR10G9 WILD-TYPE 91 33 33  0  4
D51V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR10G9 MUTATED    6  1  0  0
  OR10G9 WILD-TYPE 99  4  4 10
D51V11, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  R0              6               99
  R1              1                4
  R2              0                4
  RX              0               10
D51V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10G9 MUTATED          0        2         1         3          2          1
  OR10G9 WILD-TYPE       37       50         9        21         31          5
                  vv
clus               STAGE IV
  OR10G9 MUTATED          1
  OR10G9 WILD-TYPE        8
D51V13, multiclass

Clustering(52) Variable = MTTP MUTATION ANALYSIS
D52V1, survival
                sevent
clus2              0   1
  MTTP MUTATED     3   2
  MTTP WILD-TYPE 100  48
  MTTP MUTATED MTTP WILD-TYPE 
             5            148 
  MTTP MUTATED MTTP WILD-TYPE 
             2             48 
$`MTTP MUTATED`
TCGA-05-4396 TCGA-49-4487 TCGA-50-5049 TCGA-64-1680 TCGA-67-3774 
        9.96        28.11        48.82        37.02        12.66 

$`MTTP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99        20.02        18.84        14.04         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MTTP MUTATED MTTP WILD-TYPE 
          9.96           0.07 
  MTTP MUTATED MTTP WILD-TYPE 
         48.82         120.79 
  MTTP MUTATED MTTP WILD-TYPE 
         28.11          14.50 
[1] "10.0 - 48.8 (28.1)" "0.1 - 120.8 (14.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
                cls
clus              0  1
  MTTP MUTATED    2  4
  MTTP WILD-TYPE 91 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      2    4
  MTTP WILD-TYPE   91   75
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  FEMALE            2             91
  MALE              4             75
D52V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MTTP MUTATED                            0                                 3
  MTTP WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MTTP MUTATED                                                    3
  MTTP WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MTTP MUTATED                                            0
  MTTP WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MTTP MUTATED                                               0
  MTTP WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MTTP MUTATED                                0
  MTTP WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MTTP MUTATED                                    0
  MTTP WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MTTP MUTATED                              0                             0
  MTTP WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MTTP MUTATED                                               0
  MTTP WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MTTP MUTATED                              0
  MTTP WILD-TYPE                            2
D52V5, multiclass
D52V6, binary
                cls
clus               0   1
  MTTP MUTATED     1   5
  MTTP WILD-TYPE  11 155
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      1    5
  MTTP WILD-TYPE   11  155
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  NO             1             11
  YES            5            155
D52V7, continuous
D52V8, continuous
                vv
clus              M0  M1  MX
  MTTP MUTATED     5   1   0
  MTTP WILD-TYPE 133   8  23
D52V9, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  M0            5            133
  M1            1              8
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  MTTP MUTATED    4  1  1  0  0
  MTTP WILD-TYPE 91 36 33  1  4
D52V10, multiclass
                vv
clus              R0  R1  R2  RX
  MTTP MUTATED     3   0   0   1
  MTTP WILD-TYPE 102   5   4   9
D52V11, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  R0            3            102
  R1            0              5
  R2            0              4
  RX            1              9
D52V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MTTP MUTATED          2        2         0         0          0          1
  MTTP WILD-TYPE       35       50        10        24         33          5
                vv
clus             STAGE IV
  MTTP MUTATED          1
  MTTP WILD-TYPE        8
D52V13, multiclass

Clustering(53) Variable = RUFY2 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2               0   1
  RUFY2 MUTATED     3   4
  RUFY2 WILD-TYPE 100  46
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             146 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              4              46 
$`RUFY2 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-44-2668 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        9.96        11.64         8.09        32.45        36.49        16.41 
TCGA-73-4670 
        0.46 

$`RUFY2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-49-4486 TCGA-49-4487 
        3.12         5.42         2.70        63.72        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  RUFY2 MUTATED RUFY2 WILD-TYPE 
           0.46            0.07 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
          36.49          120.79 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
         11.640          14.945 
[1] "0.5 - 36.5 (11.6)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6836 
"RUFY2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6836 
"RUFY2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6836 
"RUFY2 WILD-TYPE" 
[1] "hr=" "2.6"
D53V2, continuous
D53V3, binary
                 cls
clus               0  1
  RUFY2 MUTATED    4  3
  RUFY2 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      4    3
  RUFY2 WILD-TYPE   89   76
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D53V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RUFY2 MUTATED                            0                                 1
  RUFY2 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RUFY2 MUTATED                                                    6
  RUFY2 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RUFY2 MUTATED                                            0
  RUFY2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RUFY2 MUTATED                                               0
  RUFY2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RUFY2 MUTATED                                0
  RUFY2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RUFY2 MUTATED                                    0
  RUFY2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RUFY2 MUTATED                              0                             0
  RUFY2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RUFY2 MUTATED                                               0
  RUFY2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RUFY2 MUTATED                              0
  RUFY2 WILD-TYPE                            2
D53V5, multiclass
D53V6, binary
                 cls
clus                0   1
  RUFY2 MUTATED     1   6
  RUFY2 WILD-TYPE  11 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      1    6
  RUFY2 WILD-TYPE   11  154
     clus
vv    RUFY2 MUTATED RUFY2 WILD-TYPE
  NO              1              11
  YES             6             154
D53V7, continuous
D53V8, continuous
                 vv
clus               M0  M1  MX
  RUFY2 MUTATED     3   1   3
  RUFY2 WILD-TYPE 135   8  20
D53V9, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  M0             3             135
  M1             1               8
  MX             3              20
                 vv
clus              N0 N1 N2 N3 NX
  RUFY2 MUTATED    4  2  0  0  1
  RUFY2 WILD-TYPE 91 35 34  1  3
D53V10, multiclass
                 vv
clus               R0  R1  R2  RX
  RUFY2 MUTATED     4   0   0   0
  RUFY2 WILD-TYPE 101   5   4  10
D53V11, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  R0             4             101
  R1             0               5
  R2             0               4
  RX             0              10
D53V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RUFY2 MUTATED          1        3         0         1          0          1
  RUFY2 WILD-TYPE       36       49        10        23         33          5
                 vv
clus              STAGE IV
  RUFY2 MUTATED          1
  RUFY2 WILD-TYPE        8
D53V13, multiclass

Clustering(54) Variable = PJA1 MUTATION ANALYSIS
D54V1, survival
                sevent
clus2             0  1
  PJA1 MUTATED    6  1
  PJA1 WILD-TYPE 97 49
  PJA1 MUTATED PJA1 WILD-TYPE 
             7            146 
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             49 
$`PJA1 MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-44-3398 TCGA-49-4514 TCGA-50-6592 TCGA-64-1676 
       45.01        37.02         8.32        43.20        25.51        56.81 
TCGA-73-4668 
       15.35 

$`PJA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PJA1 MUTATED PJA1 WILD-TYPE 
          8.32           0.07 
  PJA1 MUTATED PJA1 WILD-TYPE 
         56.81         120.79 
  PJA1 MUTATED PJA1 WILD-TYPE 
        37.020         14.025 
[1] "8.3 - 56.8 (37.0)"  "0.1 - 120.8 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "PJA1 MUTATED"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "PJA1 MUTATED"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "PJA1 MUTATED"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
[1] "hr=" "4.3"
D54V2, continuous
D54V3, binary
                cls
clus              0  1
  PJA1 MUTATED    5  3
  PJA1 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      5    3
  PJA1 WILD-TYPE   88   76
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D54V4, continuous
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4676     TCGA-75-5122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PJA1 MUTATED                            0                                 2
  PJA1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PJA1 MUTATED                                                    4
  PJA1 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PJA1 MUTATED                                            0
  PJA1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PJA1 MUTATED                                               0
  PJA1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PJA1 MUTATED                                0
  PJA1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PJA1 MUTATED                                    1
  PJA1 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PJA1 MUTATED                              0                             1
  PJA1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PJA1 MUTATED                                               0
  PJA1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  PJA1 MUTATED                              0
  PJA1 WILD-TYPE                            2
D54V5, multiclass
D54V6, binary
                cls
clus               0   1
  PJA1 MUTATED     0   8
  PJA1 WILD-TYPE  12 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      0    8
  PJA1 WILD-TYPE   12  152
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  NO             0             12
  YES            8            152
D54V7, continuous
D54V8, continuous
                vv
clus              M0  M1  MX
  PJA1 MUTATED     8   0   0
  PJA1 WILD-TYPE 130   9  23
D54V9, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  M0            8            130
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  PJA1 MUTATED    6  1  1  0  0
  PJA1 WILD-TYPE 89 36 33  1  4
D54V10, multiclass
                vv
clus             R0 R1 R2 RX
  PJA1 MUTATED    6  0  0  1
  PJA1 WILD-TYPE 99  5  4  9
D54V11, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  R0            6             99
  R1            0              5
  R2            0              4
  RX            1              9
D54V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PJA1 MUTATED          4        2         0         1          1          0
  PJA1 WILD-TYPE       33       50        10        23         32          6
                vv
clus             STAGE IV
  PJA1 MUTATED          0
  PJA1 WILD-TYPE        9
D54V13, multiclass

Clustering(55) Variable = KIAA1755 MUTATION ANALYSIS
D55V1, survival
                    sevent
clus2                 0  1
  KIAA1755 MUTATED    9  2
  KIAA1755 WILD-TYPE 94 48
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                11                142 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                 2                 48 
$`KIAA1755 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4427 TCGA-44-2657 TCGA-44-3398 TCGA-44-3918 
       38.07         9.96        26.01        13.15         8.32         6.44 
TCGA-49-4514 TCGA-50-5072 TCGA-50-6593 TCGA-67-3771 TCGA-91-6836 
       43.20         8.05        11.05        20.02         0.36 

$`KIAA1755 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
        3.98        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       10.22         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
              0.36               0.07 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
             43.20             120.79 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
             11.05              14.99 
[1] "0.4 - 43.2 (11.1)"  "0.1 - 120.8 (15.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
[1] "hr=" "1.3"
D55V2, continuous
D55V3, binary
                    cls
clus                  0  1
  KIAA1755 MUTATED    9  3
  KIAA1755 WILD-TYPE 84 76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1755 MUTATED      9    3
  KIAA1755 WILD-TYPE   84   76
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  FEMALE                9                 84
  MALE                  3                 76
D55V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  KIAA1755 MUTATED                            0
  KIAA1755 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  KIAA1755 MUTATED                                   3
  KIAA1755 WILD-TYPE                                36
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KIAA1755 MUTATED                                                    7
  KIAA1755 WILD-TYPE                                                107
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KIAA1755 MUTATED                                            0
  KIAA1755 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KIAA1755 MUTATED                                               0
  KIAA1755 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  KIAA1755 MUTATED                                0
  KIAA1755 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  KIAA1755 MUTATED                                    0
  KIAA1755 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KIAA1755 MUTATED                              0                             2
  KIAA1755 WILD-TYPE                            2                             3
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KIAA1755 MUTATED                                               0
  KIAA1755 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  KIAA1755 MUTATED                              0
  KIAA1755 WILD-TYPE                            2
D55V5, multiclass
D55V6, binary
                    cls
clus                   0   1
  KIAA1755 MUTATED     1  11
  KIAA1755 WILD-TYPE  11 149
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1755 MUTATED      1   11
  KIAA1755 WILD-TYPE   11  149
     clus
vv    KIAA1755 MUTATED KIAA1755 WILD-TYPE
  NO                 1                 11
  YES               11                149
D55V7, continuous
D55V8, continuous
                    vv
clus                  M0  M1  MX
  KIAA1755 MUTATED    11   0   1
  KIAA1755 WILD-TYPE 127   9  22
D55V9, multiclass
    clus
vv   KIAA1755 MUTATED KIAA1755 WILD-TYPE
  M0               11                127
  M1                0                  9
  MX                1                 22
                    vv
clus                 N0 N1 N2 N3 NX
  KIAA1755 MUTATED    6  2  3  0  1
  KIAA1755 WILD-TYPE 89 35 31  1  3
D55V10, multiclass
                    vv
clus                 R0 R1 R2 RX
  KIAA1755 MUTATED    7  0  1  1
  KIAA1755 WILD-TYPE 98  5  3  9
D55V11, multiclass
    clus
vv   KIAA1755 MUTATED KIAA1755 WILD-TYPE
  R0                7                 98
  R1                0                  5
  R2                1                  3
  RX                1                  9
D55V12, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  KIAA1755 MUTATED          4        3         0         1          3
  KIAA1755 WILD-TYPE       33       49        10        23         30
                    vv
clus                 STAGE IIIB STAGE IV
  KIAA1755 MUTATED            1        0
  KIAA1755 WILD-TYPE          5        9
D55V13, multiclass

Clustering(56) Variable = CNGA2 MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  CNGA2 MUTATED    6  3
  CNGA2 WILD-TYPE 97 47
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              9             144 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              3              47 
$`CNGA2 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-05-4427 TCGA-05-4430 TCGA-49-6742 TCGA-50-5045 
        9.96        29.95        26.01        25.02        15.02        71.47 
TCGA-55-1592 TCGA-64-1676 TCGA-67-3771 
       23.05        56.81        20.02 

$`CNGA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        12.99         4.93        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  CNGA2 MUTATED CNGA2 WILD-TYPE 
           9.96            0.07 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          71.47          120.79 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          25.02           13.94 
[1] "10.0 - 71.5 (25.0)" "0.1 - 120.8 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
[1] "hr=" "1.6"
D56V2, continuous
D56V3, binary
                 cls
clus               0  1
  CNGA2 MUTATED    4  7
  CNGA2 WILD-TYPE 89 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      4    7
  CNGA2 WILD-TYPE   89   72
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D56V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CNGA2 MUTATED                            0                                 6
  CNGA2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNGA2 MUTATED                                                    4
  CNGA2 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CNGA2 MUTATED                                            0
  CNGA2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CNGA2 MUTATED                                               0
  CNGA2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CNGA2 MUTATED                                0
  CNGA2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CNGA2 MUTATED                                    0
  CNGA2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CNGA2 MUTATED                              0                             0
  CNGA2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CNGA2 MUTATED                                               0
  CNGA2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CNGA2 MUTATED                              1
  CNGA2 WILD-TYPE                            1
D56V5, multiclass
D56V6, binary
                 cls
clus                0   1
  CNGA2 MUTATED     1  10
  CNGA2 WILD-TYPE  11 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      1   10
  CNGA2 WILD-TYPE   11  150
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  NO              1              11
  YES            10             150
D56V7, continuous
D56V8, continuous
                 vv
clus               M0  M1  MX
  CNGA2 MUTATED    10   0   1
  CNGA2 WILD-TYPE 128   9  22
D56V9, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  M0            10             128
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  CNGA2 MUTATED    6  5  0  0  0
  CNGA2 WILD-TYPE 89 32 34  1  4
D56V10, multiclass
                 vv
clus              R0 R1 R2 RX
  CNGA2 MUTATED    8  0  0  1
  CNGA2 WILD-TYPE 97  5  4  9
D56V11, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  R0             8              97
  R1             0               5
  R2             0               4
  RX             1               9
D56V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CNGA2 MUTATED          4        3         1         2          0          1
  CNGA2 WILD-TYPE       33       49         9        22         33          5
                 vv
clus              STAGE IV
  CNGA2 MUTATED          0
  CNGA2 WILD-TYPE        9
D56V13, multiclass

Clustering(57) Variable = ASTN2 MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  ASTN2 MUTATED    8  6
  ASTN2 WILD-TYPE 95 44
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             139 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              6              44 
$`ASTN2 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4425 TCGA-05-4427 TCGA-38-4625 
       38.07         9.96        24.03        21.99        26.01        97.74 
TCGA-38-4631 TCGA-49-4487 TCGA-50-6593 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       11.64        28.11        11.05        30.44        16.67        39.52 
TCGA-73-4670 TCGA-91-6829 
        0.46        41.33 

$`ASTN2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
        3.98        19.92        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       29.95        12.00        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       37.02        83.84         0.10         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  ASTN2 MUTATED ASTN2 WILD-TYPE 
           0.46            0.07 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          97.74          120.79 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          25.02           14.01 
[1] "0.5 - 97.7 (25.0)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
[1] "hr=" "1"  
D57V2, continuous
D57V3, binary
                 cls
clus               0  1
  ASTN2 MUTATED    8  6
  ASTN2 WILD-TYPE 85 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      8    6
  ASTN2 WILD-TYPE   85   73
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             8              85
  MALE               6              73
D57V4, continuous
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ASTN2 MUTATED                            1                                 6
  ASTN2 WILD-TYPE                          1                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASTN2 MUTATED                                                    5
  ASTN2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ASTN2 MUTATED                                            0
  ASTN2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ASTN2 MUTATED                                               2
  ASTN2 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ASTN2 MUTATED                                0
  ASTN2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ASTN2 MUTATED                                    0
  ASTN2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ASTN2 MUTATED                              0                             0
  ASTN2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ASTN2 MUTATED                                               0
  ASTN2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ASTN2 MUTATED                              0
  ASTN2 WILD-TYPE                            2
D57V5, multiclass
D57V6, binary
                 cls
clus                0   1
  ASTN2 MUTATED     1  13
  ASTN2 WILD-TYPE  11 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      1   13
  ASTN2 WILD-TYPE   11  147
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              1              11
  YES            13             147
D57V7, continuous
D57V8, continuous
                 vv
clus               M0  M1  MX
  ASTN2 MUTATED    11   2   1
  ASTN2 WILD-TYPE 127   7  22
D57V9, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  M0            11             127
  M1             2               7
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  ASTN2 MUTATED    9  3  2  0  0
  ASTN2 WILD-TYPE 86 34 32  1  4
D57V10, multiclass
                 vv
clus              R0 R1 R2 RX
  ASTN2 MUTATED   11  1  0  0
  ASTN2 WILD-TYPE 94  4  4 10
D57V11, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  R0            11              94
  R1             1               4
  R2             0               4
  RX             0              10
D57V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ASTN2 MUTATED          1        6         0         2          2          1
  ASTN2 WILD-TYPE       36       46        10        22         31          5
                 vv
clus              STAGE IV
  ASTN2 MUTATED          2
  ASTN2 WILD-TYPE        7
D57V13, multiclass

Clustering(58) Variable = STXBP5L MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                0  1
  STXBP5L MUTATED    9  2
  STXBP5L WILD-TYPE 94 48
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               11               142 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                48 
$`STXBP5L MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-38-4626 TCGA-44-2659 TCGA-44-4112 TCGA-44-6778 
        9.96        97.74       120.79        17.39         4.60        36.49 
TCGA-49-4505 TCGA-49-6744 TCGA-50-5941 TCGA-67-6217 TCGA-91-6836 
       14.07        12.99         9.37        13.87         0.36 

$`STXBP5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95         8.68        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.44         6.21         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        5.29         4.60         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  STXBP5L MUTATED STXBP5L WILD-TYPE 
             0.36              0.07 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
           120.79             83.84 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            13.87             14.99 
[1] "0.4 - 120.8 (13.9)" "0.1 - 83.8 (15.0)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
[1] "hr=" "3"  
D58V2, continuous
D58V3, binary
                   cls
clus                 0  1
  STXBP5L MUTATED    9  3
  STXBP5L WILD-TYPE 84 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      9    3
  STXBP5L WILD-TYPE   84   76
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  FEMALE               9                84
  MALE                 3                76
D58V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  STXBP5L MUTATED                            0
  STXBP5L WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  STXBP5L MUTATED                                   3
  STXBP5L WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STXBP5L MUTATED                                                    9
  STXBP5L WILD-TYPE                                                105
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STXBP5L MUTATED                                            0
  STXBP5L WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STXBP5L MUTATED                                               0
  STXBP5L WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  STXBP5L MUTATED                                0
  STXBP5L WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  STXBP5L MUTATED                                    0
  STXBP5L WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STXBP5L MUTATED                              0                             0
  STXBP5L WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STXBP5L MUTATED                                               0
  STXBP5L WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  STXBP5L MUTATED                              0
  STXBP5L WILD-TYPE                            2
D58V5, multiclass
D58V6, binary
                   cls
clus                  0   1
  STXBP5L MUTATED     0  12
  STXBP5L WILD-TYPE  12 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      0   12
  STXBP5L WILD-TYPE   12  148
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  NO                0                12
  YES              12               148
D58V7, continuous
D58V8, continuous
                   vv
clus                 M0  M1  MX
  STXBP5L MUTATED     9   0   3
  STXBP5L WILD-TYPE 129   9  20
D58V9, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  M0               9               129
  M1               0                 9
  MX               3                20
                   vv
clus                N0 N1 N2 N3 NX
  STXBP5L MUTATED    6  5  1  0  0
  STXBP5L WILD-TYPE 89 32 33  1  4
D58V10, multiclass
                   vv
clus                R0 R1 R2 RX
  STXBP5L MUTATED    7  0  0  2
  STXBP5L WILD-TYPE 98  5  4  8
D58V11, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  R0               7                98
  R1               0                 5
  R2               0                 4
  RX               2                 8
D58V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STXBP5L MUTATED          1        4         2         3          1          1
  STXBP5L WILD-TYPE       36       48         8        21         32          5
                   vv
clus                STAGE IV
  STXBP5L MUTATED          0
  STXBP5L WILD-TYPE        9
D58V13, multiclass

Clustering(59) Variable = TEX15 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  TEX15 MUTATED   10 11
  TEX15 WILD-TYPE 93 39
  TEX15 MUTATED TEX15 WILD-TYPE 
             21             132 
  TEX15 MUTATED TEX15 WILD-TYPE 
             11              39 
$`TEX15 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4427 TCGA-38-4625 
       38.07         9.96        24.03        20.05        26.01        97.74 
TCGA-38-4632 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-6742 TCGA-50-5049 
       44.61        28.11        28.57        35.54        15.02        48.82 
TCGA-50-5066 TCGA-50-5933 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-55-1592 
        9.76        77.88        42.31        25.51        11.05        23.05 
TCGA-55-6712 TCGA-64-5815 TCGA-73-4676 
        0.79         7.33         4.01 

$`TEX15 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
        3.98        19.92        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       12.00        30.02        21.99        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4490 TCGA-49-4501 
       32.45        36.49        16.41        76.21        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       11.47         3.88        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       48.62        45.17         2.86         0.07        32.61        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  TEX15 MUTATED TEX15 WILD-TYPE 
           0.79            0.07 
  TEX15 MUTATED TEX15 WILD-TYPE 
          97.74          120.79 
  TEX15 MUTATED TEX15 WILD-TYPE 
          25.51           13.51 
[1] "0.8 - 97.7 (25.5)"  "0.1 - 120.8 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-91-6836 
"TEX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-91-6836 
"TEX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-91-6836 
"TEX15 WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
D59V3, binary
                 cls
clus               0  1
  TEX15 MUTATED   10 14
  TEX15 WILD-TYPE 83 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEX15 MUTATED     10   14
  TEX15 WILD-TYPE   83   65
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  FEMALE            10              83
  MALE              14              65
D59V4, continuous
[1] "Remove cluster labels:" "TEX15 MUTATED"         
clus
  TEX15 MUTATED TEX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TEX15 MUTATED                            0                                 8
  TEX15 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TEX15 MUTATED                                                   14
  TEX15 WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TEX15 MUTATED                                            0
  TEX15 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TEX15 MUTATED                                               0
  TEX15 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TEX15 MUTATED                                0
  TEX15 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TEX15 MUTATED                                    0
  TEX15 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TEX15 MUTATED                              0                             1
  TEX15 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TEX15 MUTATED                                               0
  TEX15 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TEX15 MUTATED                              1
  TEX15 WILD-TYPE                            1
D59V5, multiclass
D59V6, binary
                 cls
clus                0   1
  TEX15 MUTATED     1  23
  TEX15 WILD-TYPE  11 137
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEX15 MUTATED      1   23
  TEX15 WILD-TYPE   11  137
     clus
vv    TEX15 MUTATED TEX15 WILD-TYPE
  NO              1              11
  YES            23             137
D59V7, continuous
D59V8, continuous
                 vv
clus               M0  M1  MX
  TEX15 MUTATED    20   1   3
  TEX15 WILD-TYPE 118   8  20
D59V9, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  M0            20             118
  M1             1               8
  MX             3              20
                 vv
clus              N0 N1 N2 N3 NX
  TEX15 MUTATED   11  8  5  0  0
  TEX15 WILD-TYPE 84 29 29  1  4
D59V10, multiclass
                 vv
clus              R0 R1 R2 RX
  TEX15 MUTATED   16  0  1  0
  TEX15 WILD-TYPE 89  5  3 10
D59V11, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  R0            16              89
  R1             0               5
  R2             1               3
  RX             0              10
D59V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TEX15 MUTATED          4        7         2         4          3          3
  TEX15 WILD-TYPE       33       45         8        20         30          3
                 vv
clus              STAGE IV
  TEX15 MUTATED          1
  TEX15 WILD-TYPE        8
D59V13, multiclass

Clustering(60) Variable = ELTD1 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    5  7
  ELTD1 WILD-TYPE 98 43
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             12             141 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              7              43 
$`ELTD1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4427 TCGA-44-2656 TCGA-49-4494 TCGA-49-6743 
        3.98         9.96        26.01        19.10        35.54        12.13 
TCGA-50-5072 TCGA-50-6590 TCGA-50-6594 TCGA-64-1677 TCGA-73-4668 TCGA-91-6829 
        8.05        42.31        12.16        20.65        15.35        41.33 

$`ELTD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        28.57        12.66        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76        49.28         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       12.26        11.47         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        56.81        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       20.28         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           3.98            0.07 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          42.31          120.79 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         17.225          14.070 
[1] "4.0 - 42.3 (17.2)"  "0.1 - 120.8 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
[1] "hr=" "2.1"
D60V2, continuous
D60V3, binary
                 cls
clus               0  1
  ELTD1 MUTATED    9  6
  ELTD1 WILD-TYPE 84 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      9    6
  ELTD1 WILD-TYPE   84   73
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D60V4, continuous
[1] "Remove cluster labels:" "ELTD1 MUTATED"         
clus
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ELTD1 MUTATED                            0                                 2
  ELTD1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ELTD1 MUTATED                                                   10
  ELTD1 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ELTD1 MUTATED                                            0
  ELTD1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ELTD1 MUTATED                                               1
  ELTD1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ELTD1 MUTATED                                1
  ELTD1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ELTD1 MUTATED                                    1
  ELTD1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ELTD1 MUTATED                              0                             0
  ELTD1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ELTD1 MUTATED                                               0
  ELTD1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ELTD1 MUTATED                              0
  ELTD1 WILD-TYPE                            2
D60V5, multiclass
D60V6, binary
                 cls
clus                0   1
  ELTD1 MUTATED     1  14
  ELTD1 WILD-TYPE  11 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   14
  ELTD1 WILD-TYPE   11  146
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              1              11
  YES            14             146
D60V7, continuous
D60V8, continuous
                 vv
clus               M0  M1  MX
  ELTD1 MUTATED    12   0   3
  ELTD1 WILD-TYPE 126   9  20
D60V9, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            12             126
  M1             0               9
  MX             3              20
                 vv
clus              N0 N1 N2 N3 NX
  ELTD1 MUTATED    5  5  5  0  0
  ELTD1 WILD-TYPE 90 32 29  1  4
D60V10, multiclass
                 vv
clus              R0 R1 R2 RX
  ELTD1 MUTATED    8  0  1  0
  ELTD1 WILD-TYPE 97  5  3 10
D60V11, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  R0             8              97
  R1             0               5
  R2             1               3
  RX             0              10
D60V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ELTD1 MUTATED          0        4         0         4          6          1
  ELTD1 WILD-TYPE       37       48        10        20         27          5
                 vv
clus              STAGE IV
  ELTD1 MUTATED          0
  ELTD1 WILD-TYPE        9
D60V13, multiclass

Clustering(61) Variable = DACT1 MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2              0  1
  DACT1 MUTATED    8  1
  DACT1 WILD-TYPE 95 49
  DACT1 MUTATED DACT1 WILD-TYPE 
              9             144 
  DACT1 MUTATED DACT1 WILD-TYPE 
              1              49 
$`DACT1 MUTATED`
TCGA-05-4427 TCGA-44-2657 TCGA-49-6742 TCGA-50-5045 TCGA-50-5066 TCGA-55-1596 
       26.01        13.15        15.02        71.47         9.76        45.17 
TCGA-67-3771 TCGA-73-4676 TCGA-91-6836 
       20.02         4.01         0.36 

$`DACT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         1.25         1.22        41.33         1.28         1.15 

  DACT1 MUTATED DACT1 WILD-TYPE 
           0.36            0.07 
  DACT1 MUTATED DACT1 WILD-TYPE 
          71.47          120.79 
  DACT1 MUTATED DACT1 WILD-TYPE 
          15.02           14.50 
[1] "0.4 - 71.5 (15.0)"  "0.1 - 120.8 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-91-6836 
  "DACT1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-91-6836 
  "DACT1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-91-6836 
  "DACT1 MUTATED" 
[1] "hr=" "3.4"
D61V2, continuous
D61V3, binary
                 cls
clus               0  1
  DACT1 MUTATED    5  5
  DACT1 WILD-TYPE 88 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACT1 MUTATED      5    5
  DACT1 WILD-TYPE   88   74
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D61V4, continuous
[1] "Remove cluster labels:" "DACT1 MUTATED"         
clus
  DACT1 MUTATED DACT1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DACT1 MUTATED                            0                                 3
  DACT1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DACT1 MUTATED                                                    6
  DACT1 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DACT1 MUTATED                                            0
  DACT1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DACT1 MUTATED                                               0
  DACT1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  DACT1 MUTATED                                0
  DACT1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  DACT1 MUTATED                                    0
  DACT1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DACT1 MUTATED                              0                             0
  DACT1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DACT1 MUTATED                                               0
  DACT1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  DACT1 MUTATED                              1
  DACT1 WILD-TYPE                            1
D61V5, multiclass
D61V6, binary
                 cls
clus                0   1
  DACT1 MUTATED     2   8
  DACT1 WILD-TYPE  10 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACT1 MUTATED      2    8
  DACT1 WILD-TYPE   10  152
     clus
vv    DACT1 MUTATED DACT1 WILD-TYPE
  NO              2              10
  YES             8             152
D61V7, continuous
D61V8, continuous
                 vv
clus               M0  M1  MX
  DACT1 MUTATED     8   0   2
  DACT1 WILD-TYPE 130   9  21
D61V9, multiclass
    clus
vv   DACT1 MUTATED DACT1 WILD-TYPE
  M0             8             130
  M1             0               9
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  DACT1 MUTATED    3  6  0  0  1
  DACT1 WILD-TYPE 92 31 34  1  3
D61V10, multiclass
                 vv
clus              R0 R1 R2 RX
  DACT1 MUTATED    7  0  0  0
  DACT1 WILD-TYPE 98  5  4 10
D61V11, multiclass
    clus
vv   DACT1 MUTATED DACT1 WILD-TYPE
  R0             7              98
  R1             0               5
  R2             0               4
  RX             0              10
D61V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DACT1 MUTATED          2        3         2         3          0          0
  DACT1 WILD-TYPE       35       49         8        21         33          6
                 vv
clus              STAGE IV
  DACT1 MUTATED          0
  DACT1 WILD-TYPE        9
D61V13, multiclass

Clustering(62) Variable = KRT28 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  KRT28 MUTATED    4  3
  KRT28 WILD-TYPE 99 47
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             146 
  KRT28 MUTATED KRT28 WILD-TYPE 
              3              47 
$`KRT28 MUTATED`
TCGA-05-4398 TCGA-44-2659 TCGA-49-6743 TCGA-50-5044 TCGA-50-5045 TCGA-64-5779 
       47.05        17.39        12.13        20.48        71.47        16.67 
TCGA-91-6829 
       41.33 

$`KRT28 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5049 
       29.75        43.20        15.02        12.99         4.93        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRT28 MUTATED KRT28 WILD-TYPE 
          12.13            0.07 
  KRT28 MUTATED KRT28 WILD-TYPE 
          71.47          120.79 
  KRT28 MUTATED KRT28 WILD-TYPE 
         20.480          14.025 
[1] "12.1 - 71.5 (20.5)" "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" "KRT28 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED"   "KRT28 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KRT28 WILD-TYPE"   "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-91-6836 
"KRT28 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" "KRT28 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED"   "KRT28 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KRT28 WILD-TYPE"   "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-91-6836 
"KRT28 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" "KRT28 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED"   "KRT28 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KRT28 WILD-TYPE"   "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-91-6836 
"KRT28 WILD-TYPE" 
[1] "hr=" "1.3"
D62V2, continuous
D62V3, binary
                 cls
clus               0  1
  KRT28 MUTATED    5  2
  KRT28 WILD-TYPE 88 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT28 MUTATED      5    2
  KRT28 WILD-TYPE   88   77
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  FEMALE             5              88
  MALE               2              77
D62V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRT28 MUTATED                            1                                 1
  KRT28 WILD-TYPE                          1                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRT28 MUTATED                                                    3
  KRT28 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRT28 MUTATED                                            0
  KRT28 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRT28 MUTATED                                               1
  KRT28 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KRT28 MUTATED                                1
  KRT28 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KRT28 MUTATED                                    0
  KRT28 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRT28 MUTATED                              0                             0
  KRT28 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRT28 MUTATED                                               0
  KRT28 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  KRT28 MUTATED                              0
  KRT28 WILD-TYPE                            2
D62V5, multiclass
D62V6, binary
                 cls
clus                0   1
  KRT28 MUTATED     2   5
  KRT28 WILD-TYPE  10 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT28 MUTATED      2    5
  KRT28 WILD-TYPE   10  155
     clus
vv    KRT28 MUTATED KRT28 WILD-TYPE
  NO              2              10
  YES             5             155
D62V7, continuous
D62V8, continuous
                 vv
clus               M0  M1  MX
  KRT28 MUTATED     5   0   2
  KRT28 WILD-TYPE 133   9  21
D62V9, multiclass
    clus
vv   KRT28 MUTATED KRT28 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  KRT28 MUTATED    1  3  2  1  0
  KRT28 WILD-TYPE 94 34 32  0  4
D62V10, multiclass
                 vv
clus               R0  R1  R2  RX
  KRT28 MUTATED     3   0   0   0
  KRT28 WILD-TYPE 102   5   4  10
D62V11, multiclass
    clus
vv   KRT28 MUTATED KRT28 WILD-TYPE
  R0             3             102
  R1             0               5
  R2             0               4
  RX             0              10
D62V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KRT28 MUTATED          1        1         0         1          2          2
  KRT28 WILD-TYPE       36       51        10        23         31          4
                 vv
clus              STAGE IV
  KRT28 MUTATED          0
  KRT28 WILD-TYPE        9
D62V13, multiclass

Clustering(63) Variable = OR10R2 MUTATION ANALYSIS
D63V1, survival
                  sevent
clus2               0  1
  OR10R2 MUTATED    6  3
  OR10R2 WILD-TYPE 97 47
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               9              144 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               3               47 
$`OR10R2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-44-2659 TCGA-44-3918 TCGA-49-4487 
        9.96        26.01        25.02        17.39         6.44        28.11 
TCGA-49-6742 TCGA-50-6594 TCGA-64-5781 
       15.02        12.16        39.52 

$`OR10R2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        43.20        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR10R2 MUTATED OR10R2 WILD-TYPE 
            6.44             0.07 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
           39.52           120.79 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
          17.390           14.055 
[1] "6.4 - 39.5 (17.4)"  "0.1 - 120.8 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10R2 MUTATED"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6836 
"OR10R2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10R2 MUTATED"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6836 
"OR10R2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10R2 MUTATED"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6836 
"OR10R2 WILD-TYPE" 
[1] "hr=" "1.2"
D63V2, continuous
D63V3, binary
                  cls
clus                0  1
  OR10R2 MUTATED    8  2
  OR10R2 WILD-TYPE 85 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10R2 MUTATED      8    2
  OR10R2 WILD-TYPE   85   77
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  FEMALE              8               85
  MALE                2               77
D63V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10R2 MUTATED                            0                                 4
  OR10R2 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10R2 MUTATED                                                    5
  OR10R2 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10R2 MUTATED                                            0
  OR10R2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10R2 MUTATED                                               0
  OR10R2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10R2 MUTATED                                0
  OR10R2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10R2 MUTATED                                    0
  OR10R2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10R2 MUTATED                              0                             0
  OR10R2 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10R2 MUTATED                                               0
  OR10R2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10R2 MUTATED                              1
  OR10R2 WILD-TYPE                            1
D63V5, multiclass
D63V6, binary
                  cls
clus                 0   1
  OR10R2 MUTATED     0  10
  OR10R2 WILD-TYPE  12 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10R2 MUTATED      0   10
  OR10R2 WILD-TYPE   12  150
     clus
vv    OR10R2 MUTATED OR10R2 WILD-TYPE
  NO               0               12
  YES             10              150
D63V7, continuous
D63V8, continuous
                  vv
clus                M0  M1  MX
  OR10R2 MUTATED     9   0   1
  OR10R2 WILD-TYPE 129   9  22
D63V9, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  M0              9              129
  M1              0                9
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  OR10R2 MUTATED    5  4  1  0  0
  OR10R2 WILD-TYPE 90 33 33  1  4
D63V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR10R2 MUTATED    8  0  0  0
  OR10R2 WILD-TYPE 97  5  4 10
D63V11, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  R0              8               97
  R1              0                5
  R2              0                4
  RX              0               10
D63V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10R2 MUTATED          2        3         0         3          1          1
  OR10R2 WILD-TYPE       35       49        10        21         32          5
                  vv
clus               STAGE IV
  OR10R2 MUTATED          0
  OR10R2 WILD-TYPE        9
D63V13, multiclass

Clustering(64) Variable = SUN1 MUTATION ANALYSIS
D64V1, survival
                sevent
clus2              0   1
  SUN1 MUTATED     2   5
  SUN1 WILD-TYPE 101  45
  SUN1 MUTATED SUN1 WILD-TYPE 
             7            146 
  SUN1 MUTATED SUN1 WILD-TYPE 
             5             45 
$`SUN1 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-38-4628 TCGA-38-4631 TCGA-44-2659 TCGA-73-4658 
        9.96        24.03        49.02        11.64        17.39        52.57 
TCGA-73-4670 
        0.46 

$`SUN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        97.74       120.79        37.71        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SUN1 MUTATED SUN1 WILD-TYPE 
          0.46           0.07 
  SUN1 MUTATED SUN1 WILD-TYPE 
         52.57         120.79 
  SUN1 MUTATED SUN1 WILD-TYPE 
         17.39          14.50 
[1] "0.5 - 52.6 (17.4)"  "0.1 - 120.8 (14.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED"   "SUN1 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6836 
"SUN1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED"   "SUN1 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6836 
"SUN1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED"   "SUN1 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6836 
"SUN1 WILD-TYPE" 
[1] "hr=" "1.8"
D64V2, continuous
D64V3, binary
                cls
clus              0  1
  SUN1 MUTATED    5  3
  SUN1 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  SUN1 MUTATED      5    3
  SUN1 WILD-TYPE   88   76
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D64V4, continuous
[1] "Remove cluster labels:" "SUN1 MUTATED"          
clus
  SUN1 MUTATED SUN1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4676 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SUN1 MUTATED                            0                                 2
  SUN1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SUN1 MUTATED                                                    6
  SUN1 WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SUN1 MUTATED                                            0
  SUN1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SUN1 MUTATED                                               0
  SUN1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SUN1 MUTATED                                0
  SUN1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SUN1 MUTATED                                    0
  SUN1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SUN1 MUTATED                              0                             0
  SUN1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SUN1 MUTATED                                               0
  SUN1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SUN1 MUTATED                              0
  SUN1 WILD-TYPE                            2
D64V5, multiclass
D64V6, binary
                cls
clus               0   1
  SUN1 MUTATED     0   8
  SUN1 WILD-TYPE  12 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  SUN1 MUTATED      0    8
  SUN1 WILD-TYPE   12  152
     clus
vv    SUN1 MUTATED SUN1 WILD-TYPE
  NO             0             12
  YES            8            152
D64V7, continuous
D64V8, continuous
                vv
clus              M0  M1  MX
  SUN1 MUTATED     7   1   0
  SUN1 WILD-TYPE 131   8  23
D64V9, multiclass
    clus
vv   SUN1 MUTATED SUN1 WILD-TYPE
  M0            7            131
  M1            1              8
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  SUN1 MUTATED    4  4  0  0  0
  SUN1 WILD-TYPE 91 33 34  1  4
D64V10, multiclass
                vv
clus             R0 R1 R2 RX
  SUN1 MUTATED    8  0  0  0
  SUN1 WILD-TYPE 97  5  4 10
D64V11, multiclass
    clus
vv   SUN1 MUTATED SUN1 WILD-TYPE
  R0            8             97
  R1            0              5
  R2            0              4
  RX            0             10
D64V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SUN1 MUTATED          0        3         0         3          0          1
  SUN1 WILD-TYPE       37       49        10        21         33          5
                vv
clus             STAGE IV
  SUN1 MUTATED          1
  SUN1 WILD-TYPE        8
D64V13, multiclass

Clustering(65) Variable = PABPC3 MUTATION ANALYSIS
D65V1, survival
                  sevent
clus2               0  1
  PABPC3 MUTATED    7  0
  PABPC3 WILD-TYPE 96 50
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               7              146 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               0               50 
$`PABPC3 MUTATED`
TCGA-05-4390 TCGA-05-4426 TCGA-05-4427 TCGA-44-6776 TCGA-67-3771 TCGA-67-6215 
       37.02        26.01        26.01        63.72        20.02         5.29 
TCGA-73-4666 
       20.28 

$`PABPC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       38.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 
        0.99        18.84        14.04        12.66         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PABPC3 MUTATED PABPC3 WILD-TYPE 
            5.29             0.07 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           63.72           120.79 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
          26.010           14.025 
[1] "5.3 - 63.7 (26.0)"  "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D65V2, continuous
D65V3, binary
                  cls
clus                0  1
  PABPC3 MUTATED    6  3
  PABPC3 WILD-TYPE 87 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      6    3
  PABPC3 WILD-TYPE   87   76
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D65V4, continuous
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PABPC3 MUTATED                            0                                 4
  PABPC3 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PABPC3 MUTATED                                                    5
  PABPC3 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PABPC3 MUTATED                                            0
  PABPC3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PABPC3 MUTATED                                               0
  PABPC3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  PABPC3 MUTATED                                0
  PABPC3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  PABPC3 MUTATED                                    0
  PABPC3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PABPC3 MUTATED                              0                             0
  PABPC3 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PABPC3 MUTATED                                               0
  PABPC3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  PABPC3 MUTATED                              0
  PABPC3 WILD-TYPE                            2
D65V5, multiclass
D65V6, binary
                  cls
clus                 0   1
  PABPC3 MUTATED     1   8
  PABPC3 WILD-TYPE  11 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      1    8
  PABPC3 WILD-TYPE   11  152
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  NO               1               11
  YES              8              152
D65V7, continuous
D65V8, continuous
                  vv
clus                M0  M1  MX
  PABPC3 MUTATED     6   2   1
  PABPC3 WILD-TYPE 132   7  22
D65V9, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  M0              6              132
  M1              2                7
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  PABPC3 MUTATED    7  1  1  0  0
  PABPC3 WILD-TYPE 88 36 33  1  4
D65V10, multiclass
                  vv
clus               R0 R1 R2 RX
  PABPC3 MUTATED    6  0  0  2
  PABPC3 WILD-TYPE 99  5  4  8
D65V11, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  R0              6               99
  R1              0                5
  R2              0                4
  RX              2                8
D65V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PABPC3 MUTATED          2        4         0         1          0          0
  PABPC3 WILD-TYPE       35       48        10        23         33          6
                  vv
clus               STAGE IV
  PABPC3 MUTATED          2
  PABPC3 WILD-TYPE        7
D65V13, multiclass

Clustering(66) Variable = TLR4 MUTATION ANALYSIS
D66V1, survival
                sevent
clus2             0  1
  TLR4 MUTATED    9 11
  TLR4 WILD-TYPE 94 39
  TLR4 MUTATED TLR4 WILD-TYPE 
            20            133 
  TLR4 MUTATED TLR4 WILD-TYPE 
            11             39 
$`TLR4 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 
        3.98        19.92         9.96        47.05        30.02        26.01 
TCGA-38-4626 TCGA-38-4632 TCGA-44-6147 TCGA-44-6777 TCGA-49-6742 TCGA-50-5049 
      120.79        44.61         7.76        32.45        15.02        48.82 
TCGA-50-5068 TCGA-50-5933 TCGA-50-6590 TCGA-50-6595 TCGA-64-5781 TCGA-73-4659 
       49.28        77.88        42.31         6.21        39.52        23.38 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`TLR4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       11.47         3.88        25.51        11.05        12.16        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.46         1.32         4.01         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TLR4 MUTATED TLR4 WILD-TYPE 
          1.25           0.07 
  TLR4 MUTATED TLR4 WILD-TYPE 
        120.79          97.74 
  TLR4 MUTATED TLR4 WILD-TYPE 
        31.235         13.150 
[1] "1.2 - 120.8 (31.2)" "0.1 - 97.7 (13.2)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-91-6836 
"TLR4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-91-6836 
"TLR4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-91-6836 
"TLR4 WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, binary
                cls
clus              0  1
  TLR4 MUTATED   12 11
  TLR4 WILD-TYPE 81 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED     12   11
  TLR4 WILD-TYPE   81   68
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  FEMALE           12             81
  MALE             11             68
D66V4, continuous
[1] "Remove cluster labels:" "TLR4 MUTATED"          
clus
  TLR4 MUTATED TLR4 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4662     TCGA-73-4666 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TLR4 MUTATED                            0                                 7
  TLR4 WILD-TYPE                          2                                32
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TLR4 MUTATED                                                   14
  TLR4 WILD-TYPE                                                100
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TLR4 MUTATED                                            0
  TLR4 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TLR4 MUTATED                                               1
  TLR4 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  TLR4 MUTATED                                0
  TLR4 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  TLR4 MUTATED                                    0
  TLR4 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TLR4 MUTATED                              0                             0
  TLR4 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TLR4 MUTATED                                               0
  TLR4 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  TLR4 MUTATED                              1
  TLR4 WILD-TYPE                            1
D66V5, multiclass
D66V6, binary
                cls
clus               0   1
  TLR4 MUTATED     1  22
  TLR4 WILD-TYPE  11 138
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED      1   22
  TLR4 WILD-TYPE   11  138
     clus
vv    TLR4 MUTATED TLR4 WILD-TYPE
  NO             1             11
  YES           22            138
D66V7, continuous
D66V8, continuous
                vv
clus              M0  M1  MX
  TLR4 MUTATED    17   1   5
  TLR4 WILD-TYPE 121   8  18
D66V9, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  M0           17            121
  M1            1              8
  MX            5             18
                vv
clus             N0 N1 N2 N3 NX
  TLR4 MUTATED   10  7  3  1  2
  TLR4 WILD-TYPE 85 30 31  0  2
D66V10, multiclass
                vv
clus             R0 R1 R2 RX
  TLR4 MUTATED   12  1  1  0
  TLR4 WILD-TYPE 93  4  3 10
D66V11, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  R0           12             93
  R1            1              4
  R2            1              3
  RX            0             10
D66V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TLR4 MUTATED          3        6         2         5          3          3
  TLR4 WILD-TYPE       34       46         8        19         30          3
                vv
clus             STAGE IV
  TLR4 MUTATED          1
  TLR4 WILD-TYPE        8
D66V13, multiclass

Clustering(67) Variable = THEMIS MUTATION ANALYSIS
D67V1, survival
                  sevent
clus2               0  1
  THEMIS MUTATED    4  4
  THEMIS WILD-TYPE 99 46
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              145 
  THEMIS MUTATED THEMIS WILD-TYPE 
               4               46 
$`THEMIS MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-35-4123 TCGA-44-4112 TCGA-49-4501 TCGA-55-1592 
        9.96         8.98         5.95         4.60        46.72        23.05 
TCGA-67-3772 TCGA-73-4670 
       18.84         0.46 

$`THEMIS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        10.22         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 
       76.21        28.11        28.57        12.66        35.54        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        20.28        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  THEMIS MUTATED THEMIS WILD-TYPE 
            0.46             0.07 
  THEMIS MUTATED THEMIS WILD-TYPE 
           46.72           120.79 
  THEMIS MUTATED THEMIS WILD-TYPE 
            9.47            14.96 
[1] "0.5 - 46.7 (9.5)"   "0.1 - 120.8 (15.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
[1] "hr=" "2.5"
D67V2, continuous
D67V3, binary
                  cls
clus                0  1
  THEMIS MUTATED    4  6
  THEMIS WILD-TYPE 89 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      4    6
  THEMIS WILD-TYPE   89   73
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D67V4, continuous
[1] "Remove cluster labels:" "THEMIS MUTATED"        
clus
  THEMIS MUTATED THEMIS WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  THEMIS MUTATED                            0                                 3
  THEMIS WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  THEMIS MUTATED                                                    7
  THEMIS WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  THEMIS MUTATED                                            0
  THEMIS WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  THEMIS MUTATED                                               0
  THEMIS WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  THEMIS MUTATED                                0
  THEMIS WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  THEMIS MUTATED                                    0
  THEMIS WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  THEMIS MUTATED                              0                             0
  THEMIS WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  THEMIS MUTATED                                               0
  THEMIS WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  THEMIS MUTATED                              0
  THEMIS WILD-TYPE                            2
D67V5, multiclass
D67V6, binary
                  cls
clus                 0   1
  THEMIS MUTATED     0  10
  THEMIS WILD-TYPE  12 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      0   10
  THEMIS WILD-TYPE   12  150
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  NO               0               12
  YES             10              150
D67V7, continuous
D67V8, continuous
                  vv
clus                M0  M1  MX
  THEMIS MUTATED     9   1   0
  THEMIS WILD-TYPE 129   8  23
D67V9, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  M0              9              129
  M1              1                8
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  THEMIS MUTATED    8  1  1  0  0
  THEMIS WILD-TYPE 87 36 33  1  4
D67V10, multiclass
                  vv
clus               R0 R1 R2 RX
  THEMIS MUTATED    8  0  0  1
  THEMIS WILD-TYPE 97  5  4  9
D67V11, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  R0              8               97
  R1              0                5
  R2              0                4
  RX              1                9
D67V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  THEMIS MUTATED          2        5         0         0          1          1
  THEMIS WILD-TYPE       35       47        10        24         32          5
                  vv
clus               STAGE IV
  THEMIS MUTATED          1
  THEMIS WILD-TYPE        8
D67V13, multiclass

Clustering(68) Variable = GNG2 MUTATION ANALYSIS
D68V1, survival
                sevent
clus2              0   1
  GNG2 MUTATED     2   2
  GNG2 WILD-TYPE 101  48
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            149 
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             48 
$`GNG2 MUTATED`
TCGA-05-5425 TCGA-38-4631 TCGA-49-4514 TCGA-55-1592 
        2.96        11.64        43.20        23.05 

$`GNG2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         4.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  GNG2 MUTATED GNG2 WILD-TYPE 
          2.96           0.07 
  GNG2 MUTATED GNG2 WILD-TYPE 
         43.20         120.79 
  GNG2 MUTATED GNG2 WILD-TYPE 
        17.345         14.930 
[1] "3.0 - 43.2 (17.3)"  "0.1 - 120.8 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
[1] "hr=" "1.7"
D68V2, continuous
D68V3, binary
                cls
clus              0  1
  GNG2 MUTATED    2  2
  GNG2 WILD-TYPE 91 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      2    2
  GNG2 WILD-TYPE   91   77
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D68V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GNG2 MUTATED                            0                                 1
  GNG2 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GNG2 MUTATED                                                    2
  GNG2 WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GNG2 MUTATED                                            0
  GNG2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GNG2 MUTATED                                               0
  GNG2 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GNG2 MUTATED                                0
  GNG2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GNG2 MUTATED                                    0
  GNG2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GNG2 MUTATED                              0                             1
  GNG2 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GNG2 MUTATED                                               0
  GNG2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  GNG2 MUTATED                              0
  GNG2 WILD-TYPE                            2
D68V5, multiclass
D68V6, binary
                cls
clus               0   1
  GNG2 MUTATED     0   4
  GNG2 WILD-TYPE  12 156
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      0    4
  GNG2 WILD-TYPE   12  156
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  NO             0             12
  YES            4            156
D68V7, continuous
D68V8, continuous
[1] "Remove cluster labels:" "GNG2 MUTATED"          
clus
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1594 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
                vv
clus              M0  M1  MX
  GNG2 MUTATED     4   0   0
  GNG2 WILD-TYPE 134   9  23
D68V9, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  M0            4            134
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  GNG2 MUTATED    3  1  0  0  0
  GNG2 WILD-TYPE 92 36 34  1  4
D68V10, multiclass
                vv
clus              R0  R1  R2  RX
  GNG2 MUTATED     3   0   0   1
  GNG2 WILD-TYPE 102   5   4   9
D68V11, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  R0            3            102
  R1            0              5
  R2            0              4
  RX            1              9
D68V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GNG2 MUTATED          2        1         0         1          0          0
  GNG2 WILD-TYPE       35       51        10        23         33          6
                vv
clus             STAGE IV
  GNG2 MUTATED          0
  GNG2 WILD-TYPE        9
D68V13, multiclass

Clustering(69) Variable = GATA3 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  GATA3 MUTATED    6  0
  GATA3 WILD-TYPE 97 50
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             147 
  GATA3 MUTATED GATA3 WILD-TYPE 
              0              50 
$`GATA3 MUTATED`
TCGA-05-4420 TCGA-50-5946 TCGA-64-1676 TCGA-64-1680 TCGA-64-5781 TCGA-73-4662 
       29.95        11.47        56.81        37.02        39.52        29.95 

$`GATA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
        2.96        14.93         8.98        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GATA3 MUTATED GATA3 WILD-TYPE 
          11.47            0.07 
  GATA3 MUTATED GATA3 WILD-TYPE 
          56.81          120.79 
  GATA3 MUTATED GATA3 WILD-TYPE 
         33.485          14.040 
[1] "11.5 - 56.8 (33.5)" "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6836 
"GATA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6836 
"GATA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6836 
"GATA3 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D69V2, continuous
D69V3, binary
                 cls
clus               0  1
  GATA3 MUTATED    2  4
  GATA3 WILD-TYPE 91 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED      2    4
  GATA3 WILD-TYPE   91   75
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  FEMALE             2              91
  MALE               4              75
D69V4, continuous
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GATA3 MUTATED                            0                                 4
  GATA3 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GATA3 MUTATED                                                    2
  GATA3 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GATA3 MUTATED                                            0
  GATA3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GATA3 MUTATED                                               0
  GATA3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  GATA3 MUTATED                                0
  GATA3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  GATA3 MUTATED                                    0
  GATA3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GATA3 MUTATED                              0                             0
  GATA3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GATA3 MUTATED                                               0
  GATA3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  GATA3 MUTATED                              0
  GATA3 WILD-TYPE                            2
D69V5, multiclass
D69V6, binary
                 cls
clus                0   1
  GATA3 MUTATED     1   5
  GATA3 WILD-TYPE  11 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED      1    5
  GATA3 WILD-TYPE   11  155
     clus
vv    GATA3 MUTATED GATA3 WILD-TYPE
  NO              1              11
  YES             5             155
D69V7, continuous
D69V8, continuous
                 vv
clus               M0  M1  MX
  GATA3 MUTATED     4   1   1
  GATA3 WILD-TYPE 134   8  22
D69V9, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  M0             4             134
  M1             1               8
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  GATA3 MUTATED    5  0  1  0  0
  GATA3 WILD-TYPE 90 37 33  1  4
D69V10, multiclass
                 vv
clus               R0  R1  R2  RX
  GATA3 MUTATED     5   0   0   0
  GATA3 WILD-TYPE 100   5   4  10
D69V11, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  R0             5             100
  R1             0               5
  R2             0               4
  RX             0              10
D69V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GATA3 MUTATED          3        2         0         0          0          0
  GATA3 WILD-TYPE       34       50        10        24         33          6
                 vv
clus              STAGE IV
  GATA3 MUTATED          1
  GATA3 WILD-TYPE        8
D69V13, multiclass

Clustering(70) Variable = APC MUTATION ANALYSIS
D70V1, survival
               sevent
clus2            0  1
  APC MUTATED    4  6
  APC WILD-TYPE 99 44
  APC MUTATED APC WILD-TYPE 
           10           143 
  APC MUTATED APC WILD-TYPE 
            6            44 
$`APC MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4402 TCGA-38-4631 TCGA-49-4507 TCGA-50-5049 
       19.92        24.03         8.02        11.64         8.81        48.82 
TCGA-50-6591 TCGA-55-5899 TCGA-73-4659 TCGA-91-6836 
        3.88         2.86        23.38         0.36 

$`APC WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  APC MUTATED APC WILD-TYPE 
         0.36          0.07 
  APC MUTATED APC WILD-TYPE 
        48.82        120.79 
  APC MUTATED APC WILD-TYPE 
       10.225        14.960 
[1] "0.4 - 48.8 (10.2)"  "0.1 - 120.8 (15.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
[1] "hr=" "3.2"
D70V2, continuous
D70V3, binary
               cls
clus             0  1
  APC MUTATED    5  5
  APC WILD-TYPE 88 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED      5    5
  APC WILD-TYPE   88   74
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE           5            88
  MALE             5            74
D70V4, continuous
[1] "Remove cluster labels:" "APC MUTATED"           
clus
  APC MUTATED APC WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-75-5122 
"APC WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  APC MUTATED                            0                                 3
  APC WILD-TYPE                          2                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  APC MUTATED                                                    7
  APC WILD-TYPE                                                107
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  APC MUTATED                                            0
  APC WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  APC MUTATED                                               0
  APC WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  APC MUTATED                                0
  APC WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  APC MUTATED                                    0                            0
  APC WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  APC MUTATED                               0
  APC WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  APC MUTATED                                               0
  APC WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  APC MUTATED                              0
  APC WILD-TYPE                            2
D70V5, multiclass
D70V6, binary
               cls
clus              0   1
  APC MUTATED     1   9
  APC WILD-TYPE  11 151
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED      1    9
  APC WILD-TYPE   11  151
     clus
vv    APC MUTATED APC WILD-TYPE
  NO            1            11
  YES           9           151
D70V7, continuous
D70V8, continuous
               vv
clus             M0  M1  MX
  APC MUTATED     7   2   1
  APC WILD-TYPE 131   7  22
D70V9, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  M0           7           131
  M1           2             7
  MX           1            22
               vv
clus            N0 N1 N2 N3 NX
  APC MUTATED    5  3  1  0  1
  APC WILD-TYPE 90 34 33  1  3
D70V10, multiclass
               vv
clus            R0 R1 R2 RX
  APC MUTATED    6  0  1  0
  APC WILD-TYPE 99  5  3 10
D70V11, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  R0           6            99
  R1           0             5
  R2           1             3
  RX           0            10
D70V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  APC MUTATED          2        3         0         1          2          0
  APC WILD-TYPE       35       49        10        23         31          6
               vv
clus            STAGE IV
  APC MUTATED          2
  APC WILD-TYPE        7
D70V13, multiclass

Clustering(71) Variable = SERPINB13 MUTATION ANALYSIS
D71V1, survival
                     sevent
clus2                  0  1
  SERPINB13 MUTATED    8  0
  SERPINB13 WILD-TYPE 95 50
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  8                 145 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  0                  50 
$`SERPINB13 MUTATED`
TCGA-05-4398 TCGA-05-4417 TCGA-38-4626 TCGA-44-6774 TCGA-49-6743 TCGA-50-5072 
       47.05        14.93       120.79         5.42        12.13         8.05 
TCGA-67-3771 TCGA-73-4668 
       20.02        15.35 

$`SERPINB13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76        49.28         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
               5.42                0.07 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
             120.79               97.74 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              15.14               14.07 
[1] "5.4 - 120.8 (15.1)" "0.1 - 97.7 (14.1)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5429          TCGA-05-5715 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-38-4627          TCGA-38-4628          TCGA-38-4629 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4630          TCGA-38-4631          TCGA-38-4632 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-6178          TCGA-44-2655          TCGA-44-2656 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2661 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2665          TCGA-44-2666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5643          TCGA-44-5645          TCGA-44-6144 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6145          TCGA-44-6146          TCGA-44-6147 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6774          TCGA-44-6775 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-44-6776          TCGA-44-6777          TCGA-44-6778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6779          TCGA-49-4486          TCGA-49-4487 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4488          TCGA-49-4490          TCGA-49-4494 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4501          TCGA-49-4505          TCGA-49-4506 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4507          TCGA-49-4510          TCGA-49-4512 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4514          TCGA-49-6742          TCGA-49-6743 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-49-6744          TCGA-49-6745          TCGA-50-5044 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5045          TCGA-50-5049          TCGA-50-5051 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5055          TCGA-50-5066          TCGA-50-5068 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5072          TCGA-50-5930          TCGA-50-5931 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5932          TCGA-50-5933          TCGA-50-5935 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5936          TCGA-50-5939          TCGA-50-5941 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5942          TCGA-50-5944          TCGA-50-5946 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6590          TCGA-50-6591          TCGA-50-6592 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6593          TCGA-50-6594          TCGA-50-6595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6597          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-55-5899 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6543          TCGA-55-6642          TCGA-55-6712 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1676          TCGA-64-1677          TCGA-64-1678 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5815          TCGA-67-3770          TCGA-67-3771 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6215          TCGA-67-6216          TCGA-67-6217 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-71-6725          TCGA-73-4658          TCGA-73-4659 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-73-4670          TCGA-73-4675          TCGA-73-4676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4677          TCGA-91-6828          TCGA-91-6829 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6831          TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5429          TCGA-05-5715 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-38-4627          TCGA-38-4628          TCGA-38-4629 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4630          TCGA-38-4631          TCGA-38-4632 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-6178          TCGA-44-2655          TCGA-44-2656 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2661 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2665          TCGA-44-2666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5643          TCGA-44-5645          TCGA-44-6144 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6145          TCGA-44-6146          TCGA-44-6147 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6774          TCGA-44-6775 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-44-6776          TCGA-44-6777          TCGA-44-6778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6779          TCGA-49-4486          TCGA-49-4487 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4488          TCGA-49-4490          TCGA-49-4494 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4501          TCGA-49-4505          TCGA-49-4506 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4507          TCGA-49-4510          TCGA-49-4512 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4514          TCGA-49-6742          TCGA-49-6743 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-49-6744          TCGA-49-6745          TCGA-50-5044 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5045          TCGA-50-5049          TCGA-50-5051 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5055          TCGA-50-5066          TCGA-50-5068 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5072          TCGA-50-5930          TCGA-50-5931 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5932          TCGA-50-5933          TCGA-50-5935 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5936          TCGA-50-5939          TCGA-50-5941 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5942          TCGA-50-5944          TCGA-50-5946 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6590          TCGA-50-6591          TCGA-50-6592 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6593          TCGA-50-6594          TCGA-50-6595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6597          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-55-5899 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6543          TCGA-55-6642          TCGA-55-6712 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1676          TCGA-64-1677          TCGA-64-1678 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5815          TCGA-67-3770          TCGA-67-3771 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6215          TCGA-67-6216          TCGA-67-6217 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-71-6725          TCGA-73-4658          TCGA-73-4659 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-73-4670          TCGA-73-4675          TCGA-73-4676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4677          TCGA-91-6828          TCGA-91-6829 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6831          TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5429          TCGA-05-5715 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-38-4627          TCGA-38-4628          TCGA-38-4629 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4630          TCGA-38-4631          TCGA-38-4632 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-6178          TCGA-44-2655          TCGA-44-2656 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2661 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2665          TCGA-44-2666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5643          TCGA-44-5645          TCGA-44-6144 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6145          TCGA-44-6146          TCGA-44-6147 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6774          TCGA-44-6775 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-44-6776          TCGA-44-6777          TCGA-44-6778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6779          TCGA-49-4486          TCGA-49-4487 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4488          TCGA-49-4490          TCGA-49-4494 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4501          TCGA-49-4505          TCGA-49-4506 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4507          TCGA-49-4510          TCGA-49-4512 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4514          TCGA-49-6742          TCGA-49-6743 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-49-6744          TCGA-49-6745          TCGA-50-5044 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5045          TCGA-50-5049          TCGA-50-5051 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5055          TCGA-50-5066          TCGA-50-5068 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5072          TCGA-50-5930          TCGA-50-5931 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5932          TCGA-50-5933          TCGA-50-5935 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5936          TCGA-50-5939          TCGA-50-5941 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5942          TCGA-50-5944          TCGA-50-5946 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6590          TCGA-50-6591          TCGA-50-6592 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6593          TCGA-50-6594          TCGA-50-6595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6597          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-55-5899 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6543          TCGA-55-6642          TCGA-55-6712 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1676          TCGA-64-1677          TCGA-64-1678 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5815          TCGA-67-3770          TCGA-67-3771 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6215          TCGA-67-6216          TCGA-67-6217 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-71-6725          TCGA-73-4658          TCGA-73-4659 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-73-4670          TCGA-73-4675          TCGA-73-4676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4677          TCGA-91-6828          TCGA-91-6829 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6831          TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D71V2, continuous
D71V3, binary
                     cls
clus                   0  1
  SERPINB13 MUTATED    7  2
  SERPINB13 WILD-TYPE 86 77
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      7    2
  SERPINB13 WILD-TYPE   86   77
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  FEMALE                 7                  86
  MALE                   2                  77
D71V4, continuous
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  2                  10 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-5778          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676 
"SERPINB13 WILD-TYPE" 
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  SERPINB13 MUTATED                            0
  SERPINB13 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  SERPINB13 MUTATED                                   2
  SERPINB13 WILD-TYPE                                37
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SERPINB13 MUTATED                                                    5
  SERPINB13 WILD-TYPE                                                109
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SERPINB13 MUTATED                                            0
  SERPINB13 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SERPINB13 MUTATED                                               0
  SERPINB13 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  SERPINB13 MUTATED                                1
  SERPINB13 WILD-TYPE                              1
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  SERPINB13 MUTATED                                    1
  SERPINB13 WILD-TYPE                                  1
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  SERPINB13 MUTATED                              0
  SERPINB13 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  SERPINB13 MUTATED                               0
  SERPINB13 WILD-TYPE                             5
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SERPINB13 MUTATED                                               0
  SERPINB13 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) CARCINOMA
  SERPINB13 MUTATED                              0
  SERPINB13 WILD-TYPE                            2
D71V5, multiclass
D71V6, binary
                     cls
clus                    0   1
  SERPINB13 MUTATED     1   8
  SERPINB13 WILD-TYPE  11 152
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      1    8
  SERPINB13 WILD-TYPE   11  152
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  NO                  1                  11
  YES                 8                 152
D71V7, continuous
D71V8, continuous
                     vv
clus                   M0  M1  MX
  SERPINB13 MUTATED     8   0   1
  SERPINB13 WILD-TYPE 130   9  22
D71V9, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  M0                 8                 130
  M1                 0                   9
  MX                 1                  22
                     vv
clus                  N0 N1 N2 N3 NX
  SERPINB13 MUTATED    4  1  3  1  0
  SERPINB13 WILD-TYPE 91 36 31  0  4
D71V10, multiclass
                     vv
clus                  R0 R1 R2 RX
  SERPINB13 MUTATED    6  0  0  0
  SERPINB13 WILD-TYPE 99  5  4 10
D71V11, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  R0                 6                  99
  R1                 0                   5
  R2                 0                   4
  RX                 0                  10
D71V12, continuous
                     vv
clus                  STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  SERPINB13 MUTATED          1        2         1         1          3
  SERPINB13 WILD-TYPE       36       50         9        23         30
                     vv
clus                  STAGE IIIB STAGE IV
  SERPINB13 MUTATED            1        0
  SERPINB13 WILD-TYPE          5        9
D71V13, multiclass

Clustering(72) Variable = PDGFA MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2               0   1
  PDGFA MUTATED     2   2
  PDGFA WILD-TYPE 101  48
  PDGFA MUTATED PDGFA WILD-TYPE 
              4             149 
  PDGFA MUTATED PDGFA WILD-TYPE 
              2              48 
$`PDGFA MUTATED`
TCGA-05-4389 TCGA-05-4396 TCGA-44-2656 TCGA-50-5936 
       45.01         9.96        19.10         8.45 

$`PDGFA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  PDGFA MUTATED PDGFA WILD-TYPE 
           8.45            0.07 
  PDGFA MUTATED PDGFA WILD-TYPE 
          45.01          120.79 
  PDGFA MUTATED PDGFA WILD-TYPE 
          14.53           14.93 
[1] "8.4 - 45.0 (14.5)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "PDGFA MUTATED" "PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE"   "PDGFA MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6836 
"PDGFA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "PDGFA MUTATED" "PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE"   "PDGFA MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6836 
"PDGFA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "PDGFA MUTATED" "PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE"   "PDGFA MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6836 
"PDGFA WILD-TYPE" 
[1] "hr=" "1.7"
D72V2, continuous
D72V3, binary
                 cls
clus               0  1
  PDGFA MUTATED    0  5
  PDGFA WILD-TYPE 93 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDGFA MUTATED      0    5
  PDGFA WILD-TYPE   93   74
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  FEMALE             0              93
  MALE               5              74
D72V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PDGFA MUTATED                            0                                 3
  PDGFA WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PDGFA MUTATED                                                    1
  PDGFA WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PDGFA MUTATED                                            0
  PDGFA WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PDGFA MUTATED                                               0
  PDGFA WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  PDGFA MUTATED                                0
  PDGFA WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  PDGFA MUTATED                                    0
  PDGFA WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PDGFA MUTATED                              0                             0
  PDGFA WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PDGFA MUTATED                                               0
  PDGFA WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  PDGFA MUTATED                              1
  PDGFA WILD-TYPE                            1
D72V5, multiclass
D72V6, binary
                 cls
clus                0   1
  PDGFA MUTATED     0   5
  PDGFA WILD-TYPE  12 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDGFA MUTATED      0    5
  PDGFA WILD-TYPE   12  155
     clus
vv    PDGFA MUTATED PDGFA WILD-TYPE
  NO              0              12
  YES             5             155
D72V7, continuous
D72V8, continuous
                 vv
clus               M0  M1  MX
  PDGFA MUTATED     5   0   0
  PDGFA WILD-TYPE 133   9  23
D72V9, multiclass
    clus
vv   PDGFA MUTATED PDGFA WILD-TYPE
  M0             5             133
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  PDGFA MUTATED    3  1  1  0  0
  PDGFA WILD-TYPE 92 36 33  1  4
D72V10, multiclass
                 vv
clus               R0  R1  R2  RX
  PDGFA MUTATED     2   0   0   1
  PDGFA WILD-TYPE 103   5   4   9
D72V11, multiclass
    clus
vv   PDGFA MUTATED PDGFA WILD-TYPE
  R0             2             103
  R1             0               5
  R2             0               4
  RX             1               9
D72V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PDGFA MUTATED          1        2         0         0          1          1
  PDGFA WILD-TYPE       36       50        10        24         32          5
                 vv
clus              STAGE IV
  PDGFA MUTATED          0
  PDGFA WILD-TYPE        9
D72V13, multiclass

Clustering(73) Variable = SCG2 MUTATION ANALYSIS
D73V1, survival
                sevent
clus2             0  1
  SCG2 MUTATED    4  4
  SCG2 WILD-TYPE 99 46
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            145 
  SCG2 MUTATED SCG2 WILD-TYPE 
             4             46 
$`SCG2 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-2656 TCGA-49-4510 TCGA-50-6592 TCGA-64-5779 
        9.96        25.02        19.10        29.46        25.51        16.67 
TCGA-73-4676 TCGA-91-6829 
        4.01        41.33 

$`SCG2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84         8.81        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.46         1.32         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  SCG2 MUTATED SCG2 WILD-TYPE 
          4.01           0.07 
  SCG2 MUTATED SCG2 WILD-TYPE 
         41.33         120.79 
  SCG2 MUTATED SCG2 WILD-TYPE 
         22.06          14.04 
[1] "4.0 - 41.3 (22.1)"  "0.1 - 120.8 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-91-6836 
"SCG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-91-6836 
"SCG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-91-6836 
"SCG2 WILD-TYPE" 
[1] "hr=" "1.7"
D73V2, continuous
D73V3, binary
                cls
clus              0  1
  SCG2 MUTATED    2  6
  SCG2 WILD-TYPE 91 73
[1] "tbl2"
                cls
clus             [,1] [,2]
  SCG2 MUTATED      2    6
  SCG2 WILD-TYPE   91   73
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  FEMALE            2             91
  MALE              6             73
D73V4, continuous
[1] "Remove cluster labels:" "SCG2 MUTATED"          
clus
  SCG2 MUTATED SCG2 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-75-5122 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SCG2 MUTATED                            1                                 2
  SCG2 WILD-TYPE                          1                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SCG2 MUTATED                                                    4
  SCG2 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SCG2 MUTATED                                            0
  SCG2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SCG2 MUTATED                                               1
  SCG2 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SCG2 MUTATED                                0
  SCG2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SCG2 MUTATED                                    0
  SCG2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SCG2 MUTATED                              0                             0
  SCG2 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SCG2 MUTATED                                               0
  SCG2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SCG2 MUTATED                              0
  SCG2 WILD-TYPE                            2
D73V5, multiclass
D73V6, binary
                cls
clus               0   1
  SCG2 MUTATED     2   6
  SCG2 WILD-TYPE  10 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  SCG2 MUTATED      2    6
  SCG2 WILD-TYPE   10  154
     clus
vv    SCG2 MUTATED SCG2 WILD-TYPE
  NO             2             10
  YES            6            154
D73V7, continuous
D73V8, continuous
                vv
clus              M0  M1  MX
  SCG2 MUTATED     7   0   1
  SCG2 WILD-TYPE 131   9  22
D73V9, multiclass
    clus
vv   SCG2 MUTATED SCG2 WILD-TYPE
  M0            7            131
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  SCG2 MUTATED    3  4  1  0  0
  SCG2 WILD-TYPE 92 33 33  1  4
D73V10, multiclass
                vv
clus              R0  R1  R2  RX
  SCG2 MUTATED     5   0   0   0
  SCG2 WILD-TYPE 100   5   4  10
D73V11, multiclass
    clus
vv   SCG2 MUTATED SCG2 WILD-TYPE
  R0            5            100
  R1            0              5
  R2            0              4
  RX            0             10
D73V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SCG2 MUTATED          0        3         1         2          1          1
  SCG2 WILD-TYPE       37       49         9        22         32          5
                vv
clus             STAGE IV
  SCG2 MUTATED          0
  SCG2 WILD-TYPE        9
D73V13, multiclass

Clustering(74) Variable = OR6F1 MUTATION ANALYSIS
D74V1, survival
                 sevent
clus2              0  1
  OR6F1 MUTATED    6  3
  OR6F1 WILD-TYPE 97 47
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              9             144 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              3              47 
$`OR6F1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4405 TCGA-38-4632 TCGA-44-2655 TCGA-44-2661 
        3.98        19.92        20.05        44.61        18.87         3.39 
TCGA-44-2668 TCGA-44-3918 TCGA-73-4677 
        8.09         6.44         1.25 

$`OR6F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       35.28        11.64         5.19        19.10        13.15        17.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       15.78        13.15         3.19        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  OR6F1 MUTATED OR6F1 WILD-TYPE 
           1.25            0.07 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          44.61          120.79 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          8.090          14.945 
[1] "1.2 - 44.6 (8.1)"   "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-91-6836 
"OR6F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-91-6836 
"OR6F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-91-6836 
"OR6F1 WILD-TYPE" 
[1] "hr=" "1.9"
D74V2, continuous
D74V3, binary
                 cls
clus               0  1
  OR6F1 MUTATED    5  5
  OR6F1 WILD-TYPE 88 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      5    5
  OR6F1 WILD-TYPE   88   74
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D74V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR6F1 MUTATED                            0                                 2
  OR6F1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6F1 MUTATED                                                    8
  OR6F1 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR6F1 MUTATED                                            0
  OR6F1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR6F1 MUTATED                                               0
  OR6F1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR6F1 MUTATED                                0
  OR6F1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR6F1 MUTATED                                    0
  OR6F1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR6F1 MUTATED                              0                             0
  OR6F1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR6F1 MUTATED                                               0
  OR6F1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR6F1 MUTATED                              0
  OR6F1 WILD-TYPE                            2
D74V5, multiclass
D74V6, binary
                 cls
clus                0   1
  OR6F1 MUTATED     0  10
  OR6F1 WILD-TYPE  12 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      0   10
  OR6F1 WILD-TYPE   12  150
     clus
vv    OR6F1 MUTATED OR6F1 WILD-TYPE
  NO              0              12
  YES            10             150
D74V7, continuous
D74V8, continuous
                 vv
clus               M0  M1  MX
  OR6F1 MUTATED     9   1   0
  OR6F1 WILD-TYPE 129   8  23
D74V9, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  M0             9             129
  M1             1               8
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  OR6F1 MUTATED    8  2  0  0  0
  OR6F1 WILD-TYPE 87 35 34  1  4
D74V10, multiclass
                 vv
clus              R0 R1 R2 RX
  OR6F1 MUTATED    9  0  1  0
  OR6F1 WILD-TYPE 96  5  3 10
D74V11, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  R0             9              96
  R1             0               5
  R2             1               3
  RX             0              10
D74V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR6F1 MUTATED          4        4         0         0          1          0
  OR6F1 WILD-TYPE       33       48        10        24         32          6
                 vv
clus              STAGE IV
  OR6F1 MUTATED          1
  OR6F1 WILD-TYPE        8
D74V13, multiclass

Clustering(75) Variable = BRE MUTATION ANALYSIS
D75V1, survival
               sevent
clus2             0   1
  BRE MUTATED     2   2
  BRE WILD-TYPE 101  48
  BRE MUTATED BRE WILD-TYPE 
            4           149 
  BRE MUTATED BRE WILD-TYPE 
            2            48 
$`BRE MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-2659 TCGA-64-5775 
        9.96        19.10        17.39         0.10 

$`BRE WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       18.87        13.15         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  BRE MUTATED BRE WILD-TYPE 
         0.10          0.07 
  BRE MUTATED BRE WILD-TYPE 
        19.10        120.79 
  BRE MUTATED BRE WILD-TYPE 
       13.675        14.930 
[1] "0.1 - 19.1 (13.7)"  "0.1 - 120.8 (14.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE"   "BRE MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE"   "BRE MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE"   "BRE MUTATED" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
[1] "hr=" "3.8"
D75V2, continuous
D75V3, binary
               cls
clus             0  1
  BRE MUTATED    1  3
  BRE WILD-TYPE 92 76
[1] "tbl2"
               cls
clus            [,1] [,2]
  BRE MUTATED      1    3
  BRE WILD-TYPE   92   76
        clus
vv       BRE MUTATED BRE WILD-TYPE
  FEMALE           1            92
  MALE             3            76
D75V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRE MUTATED                            0                                 1
  BRE WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRE MUTATED                                                    3
  BRE WILD-TYPE                                                111
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRE MUTATED                                            0
  BRE WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRE MUTATED                                               0
  BRE WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  BRE MUTATED                                0
  BRE WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  BRE MUTATED                                    0                            0
  BRE WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  BRE MUTATED                               0
  BRE WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRE MUTATED                                               0
  BRE WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  BRE MUTATED                              0
  BRE WILD-TYPE                            2
D75V5, multiclass
D75V6, binary
               cls
clus              0   1
  BRE MUTATED     0   4
  BRE WILD-TYPE  12 156
[1] "tbl2"
               cls
clus            [,1] [,2]
  BRE MUTATED      0    4
  BRE WILD-TYPE   12  156
     clus
vv    BRE MUTATED BRE WILD-TYPE
  NO            0            12
  YES           4           156
D75V7, continuous
D75V8, continuous
               vv
clus             M0  M1  MX
  BRE MUTATED     4   0   0
  BRE WILD-TYPE 134   9  23
D75V9, multiclass
    clus
vv   BRE MUTATED BRE WILD-TYPE
  M0           4           134
  M1           0             9
  MX           0            23
               vv
clus            N0 N1 N2 N3 NX
  BRE MUTATED    2  2  0  0  0
  BRE WILD-TYPE 93 35 34  1  4
D75V10, multiclass
               vv
clus             R0  R1  R2  RX
  BRE MUTATED     3   0   0   0
  BRE WILD-TYPE 102   5   4  10
D75V11, multiclass
    clus
vv   BRE MUTATED BRE WILD-TYPE
  R0           3           102
  R1           0             5
  R2           0             4
  RX           0            10
D75V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BRE MUTATED          0        1         0         1          1          1
  BRE WILD-TYPE       37       51        10        23         32          5
               vv
clus            STAGE IV
  BRE MUTATED          0
  BRE WILD-TYPE        9
D75V13, multiclass

Clustering(76) Variable = C12ORF74 MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  C12ORF74 MUTATED     1   0
  C12ORF74 WILD-TYPE 102  50
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                152 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 0                 50 
$`C12ORF74 MUTATED`
TCGA-44-3919 
        6.21 

$`C12ORF74 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
              6.21               0.07 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
              6.21             120.79 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
             6.210             14.945 
[1] "6.2 - 6.2 (6.2)"    "0.1 - 120.8 (14.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"C12ORF74 WILD-TYPE"   "C12ORF74 MUTATED" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"C12ORF74 WILD-TYPE"   "C12ORF74 MUTATED" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"C12ORF74 WILD-TYPE"   "C12ORF74 MUTATED" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                152 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5643 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D76V2, continuous
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 2                153 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4382         TCGA-05-4384         TCGA-05-4389 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4390         TCGA-05-4395         TCGA-05-4396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4403         TCGA-05-4405         TCGA-05-4410 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-49-6767 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-6642         TCGA-64-1676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-86-6562         TCGA-91-6828         TCGA-91-6829 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D76V3, binary
                    cls
clus                  0  1
  C12ORF74 MUTATED    2  1
  C12ORF74 WILD-TYPE 91 78
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF74 MUTATED      2    1
  C12ORF74 WILD-TYPE   91   78
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  FEMALE                2                 91
  MALE                  1                 78
D76V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  C12ORF74 MUTATED                            0
  C12ORF74 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  C12ORF74 MUTATED                                   0
  C12ORF74 WILD-TYPE                                39
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C12ORF74 MUTATED                                                    2
  C12ORF74 WILD-TYPE                                                112
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C12ORF74 MUTATED                                            0
  C12ORF74 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C12ORF74 MUTATED                                               0
  C12ORF74 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  C12ORF74 MUTATED                                0
  C12ORF74 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  C12ORF74 MUTATED                                    0
  C12ORF74 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C12ORF74 MUTATED                              0                             1
  C12ORF74 WILD-TYPE                            2                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C12ORF74 MUTATED                                               0
  C12ORF74 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  C12ORF74 MUTATED                              0
  C12ORF74 WILD-TYPE                            2
D76V5, multiclass
D76V6, binary
                    cls
clus                   0   1
  C12ORF74 MUTATED     0   3
  C12ORF74 WILD-TYPE  12 157
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF74 MUTATED      0    3
  C12ORF74 WILD-TYPE   12  157
     clus
vv    C12ORF74 MUTATED C12ORF74 WILD-TYPE
  NO                 0                 12
  YES                3                157
D76V7, continuous
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                111 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4382         TCGA-05-4384         TCGA-05-4389 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4390         TCGA-05-4396         TCGA-05-4397 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4398         TCGA-05-4405         TCGA-05-4410 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4629         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-44-2655         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6148 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4490 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4514 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6767         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5931         TCGA-50-5939 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-6590 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-6543         TCGA-64-1676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-6203         TCGA-75-6206 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6207         TCGA-75-6211         TCGA-80-5611 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D76V8, continuous
                    vv
clus                  M0  M1  MX
  C12ORF74 MUTATED     3   0   0
  C12ORF74 WILD-TYPE 135   9  23
D76V9, multiclass
    clus
vv   C12ORF74 MUTATED C12ORF74 WILD-TYPE
  M0                3                135
  M1                0                  9
  MX                0                 23
                    vv
clus                 N0 N1 N2 N3 NX
  C12ORF74 MUTATED    2  0  1  0  0
  C12ORF74 WILD-TYPE 93 37 33  1  4
D76V10, multiclass
                    vv
clus                  R0  R1  R2  RX
  C12ORF74 MUTATED     2   0   1   0
  C12ORF74 WILD-TYPE 103   5   3  10
D76V11, multiclass
    clus
vv   C12ORF74 MUTATED C12ORF74 WILD-TYPE
  R0                2                103
  R1                0                  5
  R2                1                  3
  RX                0                 10
D76V12, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  C12ORF74 MUTATED          1        1         0         0          1
  C12ORF74 WILD-TYPE       36       51        10        24         32
                    vv
clus                 STAGE IIIB STAGE IV
  C12ORF74 MUTATED            0        0
  C12ORF74 WILD-TYPE          6        9
D76V13, multiclass

Clustering(77) Variable = POF1B MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  POF1B MUTATED    7  1
  POF1B WILD-TYPE 96 49
  POF1B MUTATED POF1B WILD-TYPE 
              8             145 
  POF1B MUTATED POF1B WILD-TYPE 
              1              49 
$`POF1B MUTATED`
TCGA-38-4626 TCGA-44-2655 TCGA-44-6147 TCGA-50-5066 TCGA-50-6590 TCGA-67-3774 
      120.79        18.87         7.76         9.76        42.31        12.66 
TCGA-71-6725 TCGA-73-4670 
        2.01         0.46 

$`POF1B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       20.02        18.84        14.04         5.29         4.60        13.87 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        20.28        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  POF1B MUTATED POF1B WILD-TYPE 
           0.46            0.07 
  POF1B MUTATED POF1B WILD-TYPE 
         120.79           97.74 
  POF1B MUTATED POF1B WILD-TYPE 
          11.21           14.96 
[1] "0.5 - 120.8 (11.2)" "0.1 - 97.7 (15.0)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6836 
"POF1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6836 
"POF1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6836 
"POF1B WILD-TYPE" 
[1] "hr=" "3.3"
D77V2, continuous
D77V3, binary
                 cls
clus               0  1
  POF1B MUTATED    7  2
  POF1B WILD-TYPE 86 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      7    2
  POF1B WILD-TYPE   86   77
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  FEMALE             7              86
  MALE               2              77
D77V4, continuous
[1] "Remove cluster labels:" "POF1B MUTATED"         
clus
  POF1B MUTATED POF1B WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5778      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  POF1B MUTATED                            0                                 1
  POF1B WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  POF1B MUTATED                                                    7
  POF1B WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  POF1B MUTATED                                            0
  POF1B WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  POF1B MUTATED                                               0
  POF1B WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  POF1B MUTATED                                0
  POF1B WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  POF1B MUTATED                                    0
  POF1B WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  POF1B MUTATED                              0                             1
  POF1B WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  POF1B MUTATED                                               0
  POF1B WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  POF1B MUTATED                              0
  POF1B WILD-TYPE                            2
D77V5, multiclass
D77V6, binary
                 cls
clus                0   1
  POF1B MUTATED     0   9
  POF1B WILD-TYPE  12 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      0    9
  POF1B WILD-TYPE   12  151
     clus
vv    POF1B MUTATED POF1B WILD-TYPE
  NO              0              12
  YES             9             151
D77V7, continuous
D77V8, continuous
                 vv
clus               M0  M1  MX
  POF1B MUTATED     8   1   0
  POF1B WILD-TYPE 130   8  23
D77V9, multiclass
    clus
vv   POF1B MUTATED POF1B WILD-TYPE
  M0             8             130
  M1             1               8
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  POF1B MUTATED    7  1  0  0  1
  POF1B WILD-TYPE 88 36 34  1  3
D77V10, multiclass
                 vv
clus               R0  R1  R2  RX
  POF1B MUTATED     5   0   0   1
  POF1B WILD-TYPE 100   5   4   9
D77V11, multiclass
    clus
vv   POF1B MUTATED POF1B WILD-TYPE
  R0             5             100
  R1             0               5
  R2             0               4
  RX             1               9
D77V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  POF1B MUTATED          3        3         1         1          0          0
  POF1B WILD-TYPE       34       49         9        23         33          6
                 vv
clus              STAGE IV
  POF1B MUTATED          1
  POF1B WILD-TYPE        8
D77V13, multiclass

Clustering(78) Variable = OR2F2 MUTATION ANALYSIS
D78V1, survival
                 sevent
clus2              0  1
  OR2F2 MUTATED    6  0
  OR2F2 WILD-TYPE 97 50
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             147 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              0              50 
$`OR2F2 MUTATED`
TCGA-05-4427 TCGA-44-2656 TCGA-44-3918 TCGA-49-6744 TCGA-50-5049 TCGA-55-5899 
       26.01        19.10         6.44        12.99        48.82         2.86 

$`OR2F2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.13         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2F2 MUTATED OR2F2 WILD-TYPE 
           2.86            0.07 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
          48.82          120.79 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
         16.045          14.930 
[1] "2.9 - 48.8 (16.0)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6836 
"OR2F2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6836 
"OR2F2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6836 
"OR2F2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D78V2, continuous
D78V3, binary
                 cls
clus               0  1
  OR2F2 MUTATED    3  3
  OR2F2 WILD-TYPE 90 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2F2 MUTATED      3    3
  OR2F2 WILD-TYPE   90   76
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D78V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2F2 MUTATED                            0                                 2
  OR2F2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2F2 MUTATED                                                    4
  OR2F2 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2F2 MUTATED                                            0
  OR2F2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2F2 MUTATED                                               0
  OR2F2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2F2 MUTATED                                0
  OR2F2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2F2 MUTATED                                    0
  OR2F2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2F2 MUTATED                              0                             0
  OR2F2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2F2 MUTATED                                               0
  OR2F2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR2F2 MUTATED                              0
  OR2F2 WILD-TYPE                            2
D78V5, multiclass
D78V6, binary
                 cls
clus                0   1
  OR2F2 MUTATED     0   6
  OR2F2 WILD-TYPE  12 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2F2 MUTATED      0    6
  OR2F2 WILD-TYPE   12  154
     clus
vv    OR2F2 MUTATED OR2F2 WILD-TYPE
  NO              0              12
  YES             6             154
D78V7, continuous
D78V8, continuous
                 vv
clus               M0  M1  MX
  OR2F2 MUTATED     5   0   1
  OR2F2 WILD-TYPE 133   9  22
D78V9, multiclass
    clus
vv   OR2F2 MUTATED OR2F2 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  OR2F2 MUTATED    3  3  0  0  0
  OR2F2 WILD-TYPE 92 34 34  1  4
D78V10, multiclass
                 vv
clus               R0  R1  R2  RX
  OR2F2 MUTATED     3   0   0   1
  OR2F2 WILD-TYPE 102   5   4   9
D78V11, multiclass
    clus
vv   OR2F2 MUTATED OR2F2 WILD-TYPE
  R0             3             102
  R1             0               5
  R2             0               4
  RX             1               9
D78V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2F2 MUTATED          3        1         1         1          0          0
  OR2F2 WILD-TYPE       34       51         9        23         33          6
                 vv
clus              STAGE IV
  OR2F2 MUTATED          0
  OR2F2 WILD-TYPE        9
D78V13, multiclass

Clustering(79) Variable = F8 MUTATION ANALYSIS
D79V1, survival
              sevent
clus2           0  1
  F8 MUTATED    9  4
  F8 WILD-TYPE 94 46
  F8 MUTATED F8 WILD-TYPE 
          13          140 
  F8 MUTATED F8 WILD-TYPE 
           4           46 
$`F8 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-44-2656 TCGA-44-6777 TCGA-44-6778 
       37.02         9.96        20.05        19.10        32.45        36.49 
TCGA-49-6745 TCGA-50-5931 TCGA-50-6594 TCGA-67-3771 TCGA-67-3774 TCGA-73-4662 
        4.93         8.78        12.16        20.02        12.66        29.95 
TCGA-73-4670 
        0.46 

$`F8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        5.42         2.70        63.72        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        7.33         0.99        18.84        14.04         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  F8 MUTATED F8 WILD-TYPE 
        0.46         0.07 
  F8 MUTATED F8 WILD-TYPE 
       37.02       120.79 
  F8 MUTATED F8 WILD-TYPE 
        19.1         14.5 
[1] "0.5 - 37.0 (19.1)"  "0.1 - 120.8 (14.5)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
  "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429   TCGA-05-5715 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-38-4625 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629   TCGA-38-4630 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655   TCGA-44-2656 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662   TCGA-44-2665 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398   TCGA-44-3918 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645   TCGA-44-6144 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148   TCGA-44-6774 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778   TCGA-44-6779 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" 
  TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490   TCGA-49-4494 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507   TCGA-49-4510 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743   TCGA-49-6744 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049   TCGA-50-5051 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072   TCGA-50-5930 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935   TCGA-50-5936 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944   TCGA-50-5946 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593   TCGA-50-6594 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642   TCGA-55-6712 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680   TCGA-64-5774 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781   TCGA-64-5815 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725   TCGA-73-4658 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668   TCGA-73-4670 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828   TCGA-91-6829 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
  "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429   TCGA-05-5715 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-38-4625 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629   TCGA-38-4630 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655   TCGA-44-2656 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662   TCGA-44-2665 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398   TCGA-44-3918 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645   TCGA-44-6144 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148   TCGA-44-6774 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778   TCGA-44-6779 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" 
  TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490   TCGA-49-4494 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507   TCGA-49-4510 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743   TCGA-49-6744 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049   TCGA-50-5051 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072   TCGA-50-5930 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935   TCGA-50-5936 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944   TCGA-50-5946 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593   TCGA-50-6594 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642   TCGA-55-6712 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680   TCGA-64-5774 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781   TCGA-64-5815 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725   TCGA-73-4658 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668   TCGA-73-4670 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828   TCGA-91-6829 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
  "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429   TCGA-05-5715 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-38-4625 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629   TCGA-38-4630 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655   TCGA-44-2656 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662   TCGA-44-2665 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398   TCGA-44-3918 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645   TCGA-44-6144 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148   TCGA-44-6774 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778   TCGA-44-6779 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" 
  TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490   TCGA-49-4494 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507   TCGA-49-4510 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743   TCGA-49-6744 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049   TCGA-50-5051 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072   TCGA-50-5930 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935   TCGA-50-5936 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944   TCGA-50-5946 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593   TCGA-50-6594 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642   TCGA-55-6712 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680   TCGA-64-5774 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781   TCGA-64-5815 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725   TCGA-73-4658 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668   TCGA-73-4670 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" 
  TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828   TCGA-91-6829 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
[1] "hr=" "1.2"
D79V2, continuous
D79V3, binary
              cls
clus            0  1
  F8 MUTATED   10  5
  F8 WILD-TYPE 83 74
[1] "tbl2"
              cls
clus           [,1] [,2]
  F8 MUTATED     10    5
  F8 WILD-TYPE   83   74
        clus
vv       F8 MUTATED F8 WILD-TYPE
  FEMALE         10           83
  MALE            5           74
D79V4, continuous
[1] "Remove cluster labels:" "F8 MUTATED"            
clus
  F8 MUTATED F8 WILD-TYPE 
           1           11 
  TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-64-1677   TCGA-64-5778 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-71-6725   TCGA-73-4659   TCGA-73-4666   TCGA-73-4668   TCGA-73-4676 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-75-5122 
"F8 WILD-TYPE" 
              vv
clus           LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  F8 MUTATED                            0                                 3
  F8 WILD-TYPE                          2                                36
              vv
clus           LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  F8 MUTATED                                                   10
  F8 WILD-TYPE                                                104
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  F8 MUTATED                                            0
  F8 WILD-TYPE                                          1
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  F8 MUTATED                                               0
  F8 WILD-TYPE                                             2
              vv
clus           LUNG CLEAR CELL ADENOCARCINOMA
  F8 MUTATED                                0
  F8 WILD-TYPE                              2
              vv
clus           LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  F8 MUTATED                                    0                            0
  F8 WILD-TYPE                                  2                            2
              vv
clus           LUNG PAPILLARY ADENOCARCINOMA
  F8 MUTATED                               1
  F8 WILD-TYPE                             4
              vv
clus           LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  F8 MUTATED                                               1
  F8 WILD-TYPE                                             0
              vv
clus           MUCINOUS (COLLOID) CARCINOMA
  F8 MUTATED                              0
  F8 WILD-TYPE                            2
D79V5, multiclass
D79V6, binary
              cls
clus             0   1
  F8 MUTATED     1  14
  F8 WILD-TYPE  11 146
[1] "tbl2"
              cls
clus           [,1] [,2]
  F8 MUTATED      1   14
  F8 WILD-TYPE   11  146
     clus
vv    F8 MUTATED F8 WILD-TYPE
  NO           1           11
  YES         14          146
D79V7, continuous
D79V8, continuous
              vv
clus            M0  M1  MX
  F8 MUTATED    11   1   3
  F8 WILD-TYPE 127   8  20
D79V9, multiclass
    clus
vv   F8 MUTATED F8 WILD-TYPE
  M0         11          127
  M1          1            8
  MX          3           20
              vv
clus           N0 N1 N2 N3 NX
  F8 MUTATED   10  1  3  0  1
  F8 WILD-TYPE 85 36 31  1  3
D79V10, multiclass
              vv
clus           R0 R1 R2 RX
  F8 MUTATED    9  0  0  0
  F8 WILD-TYPE 96  5  4 10
D79V11, multiclass
    clus
vv   F8 MUTATED F8 WILD-TYPE
  R0          9           96
  R1          0            5
  R2          0            4
  RX          0           10
D79V12, continuous
              vv
clus           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  F8 MUTATED          3        7         0         0          3          1
  F8 WILD-TYPE       34       45        10        24         30          5
              vv
clus           STAGE IV
  F8 MUTATED          1
  F8 WILD-TYPE        8
D79V13, multiclass

Clustering(80) Variable = TSHZ3 MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  TSHZ3 MUTATED   19  4
  TSHZ3 WILD-TYPE 84 46
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             23             130 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
              4              46 
$`TSHZ3 MUTATED`
TCGA-05-4382 TCGA-05-4417 TCGA-05-4420 TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 
       19.92        14.93        29.95        25.02        25.02         2.96 
TCGA-35-4122 TCGA-35-4123 TCGA-44-2662 TCGA-44-3398 TCGA-44-3918 TCGA-44-6779 
        7.36         5.95        15.78         8.32         6.44        16.41 
TCGA-50-5049 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-55-1596 TCGA-55-5899 
       48.82        77.88         8.45         9.37        45.17         2.86 
TCGA-64-1677 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       20.65        83.84        30.44        39.52         7.33 

$`TSHZ3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.09        10.22         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        36.49        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       21.47        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        48.62         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 
       56.81        39.09        37.02         0.10        16.67         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
           2.86            0.07 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
          83.84          120.79 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
         16.410          14.025 
[1] "2.9 - 83.8 (16.4)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6836 
"TSHZ3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6836 
"TSHZ3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6836 
"TSHZ3 WILD-TYPE" 
[1] "hr=" "2.6"
D80V2, continuous
D80V3, binary
                 cls
clus               0  1
  TSHZ3 MUTATED   10 15
  TSHZ3 WILD-TYPE 83 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TSHZ3 MUTATED     10   15
  TSHZ3 WILD-TYPE   83   64
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  FEMALE            10              83
  MALE              15              64
D80V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TSHZ3 MUTATED                            0                                 8
  TSHZ3 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TSHZ3 MUTATED                                                   14
  TSHZ3 WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TSHZ3 MUTATED                                            0
  TSHZ3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TSHZ3 MUTATED                                               1
  TSHZ3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TSHZ3 MUTATED                                0
  TSHZ3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TSHZ3 MUTATED                                    0
  TSHZ3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TSHZ3 MUTATED                              0                             1
  TSHZ3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TSHZ3 MUTATED                                               0
  TSHZ3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TSHZ3 MUTATED                              1
  TSHZ3 WILD-TYPE                            1
D80V5, multiclass
D80V6, binary
                 cls
clus                0   1
  TSHZ3 MUTATED     0  25
  TSHZ3 WILD-TYPE  12 135
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TSHZ3 MUTATED      0   25
  TSHZ3 WILD-TYPE   12  135
     clus
vv    TSHZ3 MUTATED TSHZ3 WILD-TYPE
  NO              0              12
  YES            25             135
D80V7, continuous
D80V8, continuous
                 vv
clus               M0  M1  MX
  TSHZ3 MUTATED    23   0   2
  TSHZ3 WILD-TYPE 115   9  21
D80V9, multiclass
    clus
vv   TSHZ3 MUTATED TSHZ3 WILD-TYPE
  M0            23             115
  M1             0               9
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  TSHZ3 MUTATED   14  6  5  0  0
  TSHZ3 WILD-TYPE 81 31 29  1  4
D80V10, multiclass
                 vv
clus              R0 R1 R2 RX
  TSHZ3 MUTATED   19  0  1  0
  TSHZ3 WILD-TYPE 86  5  3 10
D80V11, multiclass
    clus
vv   TSHZ3 MUTATED TSHZ3 WILD-TYPE
  R0            19              86
  R1             0               5
  R2             1               3
  RX             0              10
D80V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TSHZ3 MUTATED          6        8         0         6          4          1
  TSHZ3 WILD-TYPE       31       44        10        18         29          5
                 vv
clus              STAGE IV
  TSHZ3 MUTATED          0
  TSHZ3 WILD-TYPE        9
D80V13, multiclass

Clustering(81) Variable = TBX21 MUTATION ANALYSIS
D81V1, survival
                 sevent
clus2              0  1
  TBX21 MUTATED    5  1
  TBX21 WILD-TYPE 98 49
  TBX21 MUTATED TBX21 WILD-TYPE 
              6             147 
  TBX21 MUTATED TBX21 WILD-TYPE 
              1              49 
$`TBX21 MUTATED`
TCGA-05-4427 TCGA-35-4122 TCGA-38-4628 TCGA-44-4112 TCGA-49-6743 TCGA-67-3771 
       26.01         7.36        49.02         4.60        12.13        20.02 

$`TBX21 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        97.74       120.79        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        10.22         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TBX21 MUTATED TBX21 WILD-TYPE 
           4.60            0.07 
  TBX21 MUTATED TBX21 WILD-TYPE 
          49.02          120.79 
  TBX21 MUTATED TBX21 WILD-TYPE 
         16.075          14.930 
[1] "4.6 - 49.0 (16.1)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6836 
"TBX21 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6836 
"TBX21 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6836 
"TBX21 WILD-TYPE" 
[1] "hr=" "1.8"
D81V2, continuous
D81V3, binary
                 cls
clus               0  1
  TBX21 MUTATED    6  1
  TBX21 WILD-TYPE 87 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX21 MUTATED      6    1
  TBX21 WILD-TYPE   87   78
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  FEMALE             6              87
  MALE               1              78
D81V4, continuous
[1] "Remove cluster labels:" "TBX21 MUTATED"         
clus
  TBX21 MUTATED TBX21 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX21 MUTATED                            0                                 1
  TBX21 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX21 MUTATED                                                    5
  TBX21 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX21 MUTATED                                            0
  TBX21 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX21 MUTATED                                               0
  TBX21 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TBX21 MUTATED                                1
  TBX21 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX21 MUTATED                                    0
  TBX21 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX21 MUTATED                              0                             0
  TBX21 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX21 MUTATED                                               0
  TBX21 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TBX21 MUTATED                              0
  TBX21 WILD-TYPE                            2
D81V5, multiclass
D81V6, binary
                 cls
clus                0   1
  TBX21 MUTATED     0   7
  TBX21 WILD-TYPE  12 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX21 MUTATED      0    7
  TBX21 WILD-TYPE   12  153
     clus
vv    TBX21 MUTATED TBX21 WILD-TYPE
  NO              0              12
  YES             7             153
D81V7, continuous
D81V8, continuous
                 vv
clus               M0  M1  MX
  TBX21 MUTATED     5   0   2
  TBX21 WILD-TYPE 133   9  21
D81V9, multiclass
    clus
vv   TBX21 MUTATED TBX21 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  TBX21 MUTATED    4  2  1  0  0
  TBX21 WILD-TYPE 91 35 33  1  4
D81V10, multiclass
                 vv
clus              R0 R1 R2 RX
  TBX21 MUTATED    6  0  0  0
  TBX21 WILD-TYPE 99  5  4 10
D81V11, multiclass
    clus
vv   TBX21 MUTATED TBX21 WILD-TYPE
  R0             6              99
  R1             0               5
  R2             0               4
  RX             0              10
D81V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TBX21 MUTATED          2        1         0         3          1          0
  TBX21 WILD-TYPE       35       51        10        21         32          6
                 vv
clus              STAGE IV
  TBX21 MUTATED          0
  TBX21 WILD-TYPE        9
D81V13, multiclass

Clustering(82) Variable = SPATA18 MUTATION ANALYSIS
D82V1, survival
                   sevent
clus2                0  1
  SPATA18 MUTATED    6  2
  SPATA18 WILD-TYPE 97 48
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               145 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                2                48 
$`SPATA18 MUTATED`
TCGA-05-4398 TCGA-05-4427 TCGA-44-2659 TCGA-49-6742 TCGA-49-6744 TCGA-50-5932 
       47.05        26.01        17.39        15.02        12.99        35.87 
TCGA-50-5941 TCGA-55-1592 
        9.37        23.05 

$`SPATA18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       43.20        12.13         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SPATA18 MUTATED SPATA18 WILD-TYPE 
             9.37              0.07 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
            47.05            120.79 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
            20.22             14.04 
[1] "9.4 - 47.0 (20.2)"  "0.1 - 120.8 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6836 
"SPATA18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6836 
"SPATA18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6836 
"SPATA18 WILD-TYPE" 
[1] "hr=" "1.4"
D82V2, continuous
D82V3, binary
                   cls
clus                 0  1
  SPATA18 MUTATED    5  3
  SPATA18 WILD-TYPE 88 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA18 MUTATED      5    3
  SPATA18 WILD-TYPE   88   76
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D82V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SPATA18 MUTATED                            0
  SPATA18 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPATA18 MUTATED                                   3
  SPATA18 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPATA18 MUTATED                                                    4
  SPATA18 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPATA18 MUTATED                                            0
  SPATA18 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPATA18 MUTATED                                               0
  SPATA18 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SPATA18 MUTATED                                0
  SPATA18 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SPATA18 MUTATED                                    0
  SPATA18 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPATA18 MUTATED                              0                             0
  SPATA18 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPATA18 MUTATED                                               0
  SPATA18 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  SPATA18 MUTATED                              1
  SPATA18 WILD-TYPE                            1
D82V5, multiclass
D82V6, binary
                   cls
clus                  0   1
  SPATA18 MUTATED     0   8
  SPATA18 WILD-TYPE  12 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA18 MUTATED      0    8
  SPATA18 WILD-TYPE   12  152
     clus
vv    SPATA18 MUTATED SPATA18 WILD-TYPE
  NO                0                12
  YES               8               152
D82V7, continuous
D82V8, continuous
                   vv
clus                 M0  M1  MX
  SPATA18 MUTATED     6   0   2
  SPATA18 WILD-TYPE 132   9  21
D82V9, multiclass
    clus
vv   SPATA18 MUTATED SPATA18 WILD-TYPE
  M0               6               132
  M1               0                 9
  MX               2                21
                   vv
clus                N0 N1 N2 N3 NX
  SPATA18 MUTATED    1  5  1  1  0
  SPATA18 WILD-TYPE 94 32 33  0  4
D82V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  SPATA18 MUTATED     4   0   0   1
  SPATA18 WILD-TYPE 101   5   4   9
D82V11, multiclass
    clus
vv   SPATA18 MUTATED SPATA18 WILD-TYPE
  R0               4               101
  R1               0                 5
  R2               0                 4
  RX               1                 9
D82V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SPATA18 MUTATED          1        0         1         4          1          1
  SPATA18 WILD-TYPE       36       52         9        20         32          5
                   vv
clus                STAGE IV
  SPATA18 MUTATED          0
  SPATA18 WILD-TYPE        9
D82V13, multiclass

Clustering(83) Variable = GPR158 MUTATION ANALYSIS
D83V1, survival
                  sevent
clus2               0  1
  GPR158 MUTATED    8  8
  GPR158 WILD-TYPE 95 42
  GPR158 MUTATED GPR158 WILD-TYPE 
              16              137 
  GPR158 MUTATED GPR158 WILD-TYPE 
               8               42 
$`GPR158 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4427 TCGA-05-4432 TCGA-05-5420 TCGA-38-4625 
       19.92        47.05        26.01        25.02         1.02        97.74 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-44-3918 TCGA-44-6777 
       49.02        28.37        11.64        44.61         6.44        32.45 
TCGA-50-5930 TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
        9.27        42.31        12.16        20.02 

$`GPR158 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68       120.79 
TCGA-38-4627 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       37.71        35.28         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76        49.28         8.05         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       12.26        11.47         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  GPR158 MUTATED GPR158 WILD-TYPE 
            1.02             0.07 
  GPR158 MUTATED GPR158 WILD-TYPE 
           97.74           120.79 
  GPR158 MUTATED GPR158 WILD-TYPE 
          25.515           14.010 
[1] "1.0 - 97.7 (25.5)"  "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
[1] "hr=" "1"  
D83V2, continuous
D83V3, binary
                  cls
clus                0  1
  GPR158 MUTATED   11  7
  GPR158 WILD-TYPE 82 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED     11    7
  GPR158 WILD-TYPE   82   72
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  FEMALE             11               82
  MALE                7               72
D83V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR158 MUTATED                            0                                 6
  GPR158 WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR158 MUTATED                                                   12
  GPR158 WILD-TYPE                                                102
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR158 MUTATED                                            0
  GPR158 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR158 MUTATED                                               0
  GPR158 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR158 MUTATED                                0
  GPR158 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR158 MUTATED                                    0
  GPR158 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR158 MUTATED                              0                             0
  GPR158 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR158 MUTATED                                               0
  GPR158 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  GPR158 MUTATED                              0
  GPR158 WILD-TYPE                            2
D83V5, multiclass
D83V6, binary
                  cls
clus                 0   1
  GPR158 MUTATED     2  16
  GPR158 WILD-TYPE  10 144
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      2   16
  GPR158 WILD-TYPE   10  144
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  NO               2               10
  YES             16              144
D83V7, continuous
D83V8, continuous
                  vv
clus                M0  M1  MX
  GPR158 MUTATED    15   1   2
  GPR158 WILD-TYPE 123   8  21
D83V9, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  M0             15              123
  M1              1                8
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  GPR158 MUTATED    9  4  3  1  1
  GPR158 WILD-TYPE 86 33 31  0  3
D83V10, multiclass
                  vv
clus               R0 R1 R2 RX
  GPR158 MUTATED   13  0  0  1
  GPR158 WILD-TYPE 92  5  4  9
D83V11, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  R0             13               92
  R1              0                5
  R2              0                4
  RX              1                9
D83V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GPR158 MUTATED          2        6         0         5          3          1
  GPR158 WILD-TYPE       35       46        10        19         30          5
                  vv
clus               STAGE IV
  GPR158 MUTATED          1
  GPR158 WILD-TYPE        8
D83V13, multiclass

Clustering(84) Variable = DENND2A MUTATION ANALYSIS
D84V1, survival
                   sevent
clus2                0  1
  DENND2A MUTATED    4  5
  DENND2A WILD-TYPE 99 45
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               144 
  DENND2A MUTATED DENND2A WILD-TYPE 
                5                45 
$`DENND2A MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4415 TCGA-05-4420 TCGA-50-6590 TCGA-55-1592 
        9.96        24.03         2.96        29.95        42.31        23.05 
TCGA-55-6712 TCGA-91-6828 TCGA-91-6836 
        0.79         1.22         0.36 

$`DENND2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00        20.05        14.93         8.98 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       48.62        45.17         2.86         0.07        32.61        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 

  DENND2A MUTATED DENND2A WILD-TYPE 
             0.36              0.07 
  DENND2A MUTATED DENND2A WILD-TYPE 
            42.31            120.79 
  DENND2A MUTATED DENND2A WILD-TYPE 
            9.960            14.945 
[1] "0.4 - 42.3 (10.0)"  "0.1 - 120.8 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED"   "DENND2A MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-91-6836 
  "DENND2A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED"   "DENND2A MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-91-6836 
  "DENND2A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED"   "DENND2A MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-91-6836 
  "DENND2A MUTATED" 
[1] "hr=" "2.7"
D84V2, continuous
D84V3, binary
                   cls
clus                 0  1
  DENND2A MUTATED    2  7
  DENND2A WILD-TYPE 91 72
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DENND2A MUTATED      2    7
  DENND2A WILD-TYPE   91   72
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  FEMALE               2                91
  MALE                 7                72
D84V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  DENND2A MUTATED                            0
  DENND2A WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  DENND2A MUTATED                                   4
  DENND2A WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DENND2A MUTATED                                                    5
  DENND2A WILD-TYPE                                                109
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DENND2A MUTATED                                            0
  DENND2A WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DENND2A MUTATED                                               0
  DENND2A WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  DENND2A MUTATED                                0
  DENND2A WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  DENND2A MUTATED                                    0
  DENND2A WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DENND2A MUTATED                              0                             0
  DENND2A WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DENND2A MUTATED                                               0
  DENND2A WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  DENND2A MUTATED                              0
  DENND2A WILD-TYPE                            2
D84V5, multiclass
D84V6, binary
                   cls
clus                  0   1
  DENND2A MUTATED     0   9
  DENND2A WILD-TYPE  12 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DENND2A MUTATED      0    9
  DENND2A WILD-TYPE   12  151
     clus
vv    DENND2A MUTATED DENND2A WILD-TYPE
  NO                0                12
  YES               9               151
D84V7, continuous
D84V8, continuous
                   vv
clus                 M0  M1  MX
  DENND2A MUTATED     6   0   3
  DENND2A WILD-TYPE 132   9  20
D84V9, multiclass
    clus
vv   DENND2A MUTATED DENND2A WILD-TYPE
  M0               6               132
  M1               0                 9
  MX               3                20
                   vv
clus                N0 N1 N2 N3 NX
  DENND2A MUTATED    5  3  1  0  0
  DENND2A WILD-TYPE 90 34 33  1  4
D84V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  DENND2A MUTATED     5   0   0   0
  DENND2A WILD-TYPE 100   5   4  10
D84V11, multiclass
    clus
vv   DENND2A MUTATED DENND2A WILD-TYPE
  R0               5               100
  R1               0                 5
  R2               0                 4
  RX               0                10
D84V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DENND2A MUTATED          2        3         1         1          0          2
  DENND2A WILD-TYPE       35       49         9        23         33          4
                   vv
clus                STAGE IV
  DENND2A MUTATED          0
  DENND2A WILD-TYPE        9
D84V13, multiclass

Clustering(85) Variable = EPHB6 MUTATION ANALYSIS
D85V1, survival
                 sevent
clus2              0  1
  EPHB6 MUTATED   11  6
  EPHB6 WILD-TYPE 92 44
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             17             136 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              6              44 
$`EPHB6 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-44-6145 TCGA-44-6776 TCGA-44-6777 
        9.96        14.93        29.95         3.35        63.72        32.45 
TCGA-44-6778 TCGA-49-4510 TCGA-49-6744 TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 
       36.49        29.46        12.99        77.88         9.37        42.31 
TCGA-64-1676 TCGA-64-1677 TCGA-64-5781 TCGA-64-5815 TCGA-91-6836 
       56.81        20.65        39.52         7.33         0.36 

$`EPHB6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         0.30         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        5.42         2.70        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  EPHB6 MUTATED EPHB6 WILD-TYPE 
           0.36            0.07 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
          77.88          120.79 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
         29.460          14.025 
[1] "0.4 - 77.9 (29.5)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6836 
  "EPHB6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6836 
  "EPHB6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6836 
  "EPHB6 MUTATED" 
[1] "hr=" "1.5"
D85V2, continuous
D85V3, binary
                 cls
clus               0  1
  EPHB6 MUTATED   11  8
  EPHB6 WILD-TYPE 82 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB6 MUTATED     11    8
  EPHB6 WILD-TYPE   82   71
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  FEMALE            11              82
  MALE               8              71
D85V4, continuous
[1] "Remove cluster labels:" "EPHB6 MUTATED"         
clus
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHB6 MUTATED                            0                                 8
  EPHB6 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHB6 MUTATED                                                   11
  EPHB6 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHB6 MUTATED                                            0
  EPHB6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHB6 MUTATED                                               0
  EPHB6 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHB6 MUTATED                                0
  EPHB6 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHB6 MUTATED                                    0
  EPHB6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHB6 MUTATED                              0                             0
  EPHB6 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHB6 MUTATED                                               0
  EPHB6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  EPHB6 MUTATED                              0
  EPHB6 WILD-TYPE                            2
D85V5, multiclass
D85V6, binary
                 cls
clus                0   1
  EPHB6 MUTATED     1  18
  EPHB6 WILD-TYPE  11 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB6 MUTATED      1   18
  EPHB6 WILD-TYPE   11  142
     clus
vv    EPHB6 MUTATED EPHB6 WILD-TYPE
  NO              1              11
  YES            18             142
D85V7, continuous
D85V8, continuous
                 vv
clus               M0  M1  MX
  EPHB6 MUTATED    14   0   5
  EPHB6 WILD-TYPE 124   9  18
D85V9, multiclass
    clus
vv   EPHB6 MUTATED EPHB6 WILD-TYPE
  M0            14             124
  M1             0               9
  MX             5              18
                 vv
clus              N0 N1 N2 N3 NX
  EPHB6 MUTATED   10  5  3  0  1
  EPHB6 WILD-TYPE 85 32 31  1  3
D85V10, multiclass
                 vv
clus              R0 R1 R2 RX
  EPHB6 MUTATED    9  0  0  2
  EPHB6 WILD-TYPE 96  5  4  8
D85V11, multiclass
    clus
vv   EPHB6 MUTATED EPHB6 WILD-TYPE
  R0             9              96
  R1             0               5
  R2             0               4
  RX             2               8
D85V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EPHB6 MUTATED          4        7         2         2          2          2
  EPHB6 WILD-TYPE       33       45         8        22         31          4
                 vv
clus              STAGE IV
  EPHB6 MUTATED          0
  EPHB6 WILD-TYPE        9
D85V13, multiclass

Clustering(86) Variable = EPHA6 MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  EPHA6 MUTATED   15  6
  EPHA6 WILD-TYPE 88 44
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             21             132 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              6              44 
$`EPHA6 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96         8.98        29.95        30.02        26.01 
TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6778 TCGA-49-4494 TCGA-50-5066 
       49.02        19.10         8.09        36.49        35.54         9.76 
TCGA-50-5942 TCGA-55-1595 TCGA-64-5778 TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 
        4.44        48.62        30.44        16.67        20.02        14.04 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4677 
       23.38        29.95         1.25 

$`EPHA6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        28.57        12.66        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       12.16         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        83.84         0.10        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.99        18.84        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  EPHA6 MUTATED EPHA6 WILD-TYPE 
           1.25            0.07 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          49.02          120.79 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          20.02           13.51 
[1] "1.2 - 49.0 (20.0)"  "0.1 - 120.8 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
[1] "hr=" "1.2"
D86V2, continuous
D86V3, binary
                 cls
clus               0  1
  EPHA6 MUTATED    8 14
  EPHA6 WILD-TYPE 85 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      8   14
  EPHA6 WILD-TYPE   85   65
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  FEMALE             8              85
  MALE              14              65
D86V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHA6 MUTATED                            1                                 7
  EPHA6 WILD-TYPE                          1                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHA6 MUTATED                                                   11
  EPHA6 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHA6 MUTATED                                            0
  EPHA6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHA6 MUTATED                                               1
  EPHA6 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHA6 MUTATED                                1
  EPHA6 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHA6 MUTATED                                    0
  EPHA6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHA6 MUTATED                              0                             1
  EPHA6 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHA6 MUTATED                                               0
  EPHA6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  EPHA6 MUTATED                              0
  EPHA6 WILD-TYPE                            2
D86V5, multiclass
D86V6, binary
                 cls
clus                0   1
  EPHA6 MUTATED     2  20
  EPHA6 WILD-TYPE  10 140
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      2   20
  EPHA6 WILD-TYPE   10  140
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              2              10
  YES            20             140
D86V7, continuous
D86V8, continuous
                 vv
clus               M0  M1  MX
  EPHA6 MUTATED    21   0   1
  EPHA6 WILD-TYPE 117   9  22
D86V9, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  M0            21             117
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  EPHA6 MUTATED   14  3  5  0  0
  EPHA6 WILD-TYPE 81 34 29  1  4
D86V10, multiclass
                 vv
clus              R0 R1 R2 RX
  EPHA6 MUTATED   16  1  1  0
  EPHA6 WILD-TYPE 89  4  3 10
D86V11, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  R0            16              89
  R1             1               4
  R2             1               3
  RX             0              10
D86V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EPHA6 MUTATED          5        7         0         3          5          1
  EPHA6 WILD-TYPE       32       45        10        21         28          5
                 vv
clus              STAGE IV
  EPHA6 MUTATED          0
  EPHA6 WILD-TYPE        9
D86V13, multiclass

Clustering(87) Variable = TTC18 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2               0   1
  TTC18 MUTATED     3   1
  TTC18 WILD-TYPE 100  49
  TTC18 MUTATED TTC18 WILD-TYPE 
              4             149 
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              49 
$`TTC18 MUTATED`
TCGA-05-4402 TCGA-49-6743 TCGA-67-3771 TCGA-73-4666 
        8.02        12.13        20.02        20.28 

$`TTC18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TTC18 MUTATED TTC18 WILD-TYPE 
           8.02            0.07 
  TTC18 MUTATED TTC18 WILD-TYPE 
          20.28          120.79 
  TTC18 MUTATED TTC18 WILD-TYPE 
         16.075          14.930 
[1] "8.0 - 20.3 (16.1)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6836 
"TTC18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6836 
"TTC18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6836 
"TTC18 WILD-TYPE" 
[1] "hr=" "1.6"
D87V2, continuous
D87V3, binary
                 cls
clus               0  1
  TTC18 MUTATED    5  0
  TTC18 WILD-TYPE 88 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTC18 MUTATED      5    0
  TTC18 WILD-TYPE   88   79
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  FEMALE             5              88
  MALE               0              79
D87V4, continuous
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TTC18 MUTATED                            0                                 1
  TTC18 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TTC18 MUTATED                                                    3
  TTC18 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TTC18 MUTATED                                            0
  TTC18 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TTC18 MUTATED                                               0
  TTC18 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TTC18 MUTATED                                1
  TTC18 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TTC18 MUTATED                                    0
  TTC18 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TTC18 MUTATED                              0                             0
  TTC18 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TTC18 MUTATED                                               0
  TTC18 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TTC18 MUTATED                              0
  TTC18 WILD-TYPE                            2
D87V5, multiclass
D87V6, binary
                 cls
clus                0   1
  TTC18 MUTATED     1   4
  TTC18 WILD-TYPE  11 156
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTC18 MUTATED      1    4
  TTC18 WILD-TYPE   11  156
     clus
vv    TTC18 MUTATED TTC18 WILD-TYPE
  NO              1              11
  YES             4             156
D87V7, continuous
D87V8, continuous
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-73-4659 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
                 vv
clus               M0  M1  MX
  TTC18 MUTATED     2   2   1
  TTC18 WILD-TYPE 136   7  22
D87V9, multiclass
    clus
vv   TTC18 MUTATED TTC18 WILD-TYPE
  M0             2             136
  M1             2               7
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  TTC18 MUTATED    3  0  1  0  1
  TTC18 WILD-TYPE 92 37 33  1  3
D87V10, multiclass
                 vv
clus               R0  R1  R2  RX
  TTC18 MUTATED     3   0   1   0
  TTC18 WILD-TYPE 102   5   3  10
D87V11, multiclass
    clus
vv   TTC18 MUTATED TTC18 WILD-TYPE
  R0             3             102
  R1             0               5
  R2             1               3
  RX             0              10
D87V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TTC18 MUTATED          1        1         0         0          1          0
  TTC18 WILD-TYPE       36       51        10        24         32          6
                 vv
clus              STAGE IV
  TTC18 MUTATED          2
  TTC18 WILD-TYPE        7
D87V13, multiclass

Clustering(88) Variable = FSCB MUTATION ANALYSIS
D88V1, survival
                sevent
clus2             0  1
  FSCB MUTATED   11  3
  FSCB WILD-TYPE 92 47
  FSCB MUTATED FSCB WILD-TYPE 
            14            139 
  FSCB MUTATED FSCB WILD-TYPE 
             3             47 
$`FSCB MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4432 TCGA-44-4112 TCGA-44-6147 TCGA-44-6774 
       19.92        47.05        25.02         4.60         7.76         5.42 
TCGA-44-6778 TCGA-49-4507 TCGA-50-5045 TCGA-50-5049 TCGA-50-5072 TCGA-55-1596 
       36.49         8.81        71.47        48.82         8.05        45.17 
TCGA-64-5781 TCGA-91-6829 
       39.52        41.33 

$`FSCB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        10.22         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 
        6.84         0.30         3.35         9.93         3.12         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       20.48        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  FSCB MUTATED FSCB WILD-TYPE 
          4.60           0.07 
  FSCB MUTATED FSCB WILD-TYPE 
         71.47         120.79 
  FSCB MUTATED FSCB WILD-TYPE 
        30.755         14.040 
[1] "4.6 - 71.5 (30.8)"  "0.1 - 120.8 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-91-6836 
"FSCB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-91-6836 
"FSCB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-91-6836 
"FSCB WILD-TYPE" 
[1] "hr=" "2.5"
D88V2, continuous
D88V3, binary
                cls
clus              0  1
  FSCB MUTATED    7  8
  FSCB WILD-TYPE 86 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  FSCB MUTATED      7    8
  FSCB WILD-TYPE   86   71
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  FEMALE            7             86
  MALE              8             71
D88V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FSCB MUTATED                            0                                 4
  FSCB WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FSCB MUTATED                                                    9
  FSCB WILD-TYPE                                                105
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FSCB MUTATED                                            0
  FSCB WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FSCB MUTATED                                               1
  FSCB WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FSCB MUTATED                                0
  FSCB WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FSCB MUTATED                                    0
  FSCB WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FSCB MUTATED                              0                             0
  FSCB WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FSCB MUTATED                                               1
  FSCB WILD-TYPE                                             0
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  FSCB MUTATED                              0
  FSCB WILD-TYPE                            2
D88V5, multiclass
D88V6, binary
                cls
clus               0   1
  FSCB MUTATED     3  12
  FSCB WILD-TYPE   9 148
[1] "tbl2"
                cls
clus             [,1] [,2]
  FSCB MUTATED      3   12
  FSCB WILD-TYPE    9  148
     clus
vv    FSCB MUTATED FSCB WILD-TYPE
  NO             3              9
  YES           12            148
D88V7, continuous
D88V8, continuous
                vv
clus              M0  M1  MX
  FSCB MUTATED    13   0   2
  FSCB WILD-TYPE 125   9  21
D88V9, multiclass
    clus
vv   FSCB MUTATED FSCB WILD-TYPE
  M0           13            125
  M1            0              9
  MX            2             21
                vv
clus             N0 N1 N2 N3 NX
  FSCB MUTATED    7  4  2  1  1
  FSCB WILD-TYPE 88 33 32  0  3
D88V10, multiclass
                vv
clus             R0 R1 R2 RX
  FSCB MUTATED    8  0  0  0
  FSCB WILD-TYPE 97  5  4 10
D88V11, multiclass
    clus
vv   FSCB MUTATED FSCB WILD-TYPE
  R0            8             97
  R1            0              5
  R2            0              4
  RX            0             10
D88V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FSCB MUTATED          4        5         0         2          3          1
  FSCB WILD-TYPE       33       47        10        22         30          5
                vv
clus             STAGE IV
  FSCB MUTATED          0
  FSCB WILD-TYPE        9
D88V13, multiclass

Clustering(89) Variable = SPTA1 MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  SPTA1 MUTATED   33 12
  SPTA1 WILD-TYPE 70 38
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             45             108 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             12              38 
$`SPTA1 MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        45.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4422 TCGA-05-4424 
       47.05         8.02        20.05        14.93        12.00        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4632 
       26.01        26.01         0.46         5.95         8.68        44.61 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-6778 
       13.15        17.39         8.09         6.44         4.60        36.49 
TCGA-49-4488 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-50-5045 
       28.57        32.84         8.81        43.20        15.02        71.47 
TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 TCGA-50-6597 TCGA-55-1595 TCGA-55-1596 
       77.88         9.37        42.31        33.37        48.62        45.17 
TCGA-64-1676 TCGA-64-5775 TCGA-64-5781 TCGA-67-3770 TCGA-67-3773 TCGA-67-6217 
       56.81         0.10        39.52         0.99        14.04        13.87 
TCGA-73-4658 TCGA-73-4662 TCGA-91-6836 
       52.57        29.95         0.36 

$`SPTA1 WILD-TYPE`
TCGA-05-4384 TCGA-05-4397 TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       14.01        24.03        19.00         2.96         8.98        29.95 
TCGA-05-4425 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       21.99        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-38-4625 
        4.96         2.96         0.99         2.04         7.36        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        19.10         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
        3.19        10.22         8.32         6.21         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 
       12.66        35.54        46.72        14.07        29.46        29.75 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        12.99         4.93        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       35.87        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        7.33        20.02        18.84        12.66         5.29         4.60 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        23.38        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  SPTA1 MUTATED SPTA1 WILD-TYPE 
           0.10            0.07 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
          77.88          120.79 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
         20.050          12.825 
[1] "0.1 - 77.9 (20.1)"  "0.1 - 120.8 (12.8)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6836 
  "SPTA1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6836 
  "SPTA1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6836 
  "SPTA1 MUTATED" 
[1] "hr=" "2"  
D89V2, continuous
D89V3, binary
                 cls
clus               0  1
  SPTA1 MUTATED   29 22
  SPTA1 WILD-TYPE 64 57
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPTA1 MUTATED     29   22
  SPTA1 WILD-TYPE   64   57
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  FEMALE            29              64
  MALE              22              57
D89V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPTA1 MUTATED                            0                                15
  SPTA1 WILD-TYPE                          2                                24
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPTA1 MUTATED                                                   31
  SPTA1 WILD-TYPE                                                 83
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPTA1 MUTATED                                            0
  SPTA1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPTA1 MUTATED                                               0
  SPTA1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SPTA1 MUTATED                                1
  SPTA1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SPTA1 MUTATED                                    1
  SPTA1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPTA1 MUTATED                              0                             1
  SPTA1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPTA1 MUTATED                                               1
  SPTA1 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SPTA1 MUTATED                              1
  SPTA1 WILD-TYPE                            1
D89V5, multiclass
D89V6, binary
                 cls
clus                0   1
  SPTA1 MUTATED     2  49
  SPTA1 WILD-TYPE  10 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPTA1 MUTATED      2   49
  SPTA1 WILD-TYPE   10  111
     clus
vv    SPTA1 MUTATED SPTA1 WILD-TYPE
  NO              2              10
  YES            49             111
D89V7, continuous
D89V8, continuous
                 vv
clus              M0 M1 MX
  SPTA1 MUTATED   43  3  5
  SPTA1 WILD-TYPE 95  6 18
D89V9, multiclass
    clus
vv   SPTA1 MUTATED SPTA1 WILD-TYPE
  M0            43              95
  M1             3               6
  MX             5              18
                 vv
clus              N0 N1 N2 N3 NX
  SPTA1 MUTATED   31 13  4  1  2
  SPTA1 WILD-TYPE 64 24 30  0  2
D89V10, multiclass
                 vv
clus              R0 R1 R2 RX
  SPTA1 MUTATED   35  2  2  3
  SPTA1 WILD-TYPE 70  3  2  7
D89V11, multiclass
    clus
vv   SPTA1 MUTATED SPTA1 WILD-TYPE
  R0            35              70
  R1             2               3
  R2             2               2
  RX             3               7
D89V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SPTA1 MUTATED         11       19         2         8          5          3
  SPTA1 WILD-TYPE       26       33         8        16         28          3
                 vv
clus              STAGE IV
  SPTA1 MUTATED          3
  SPTA1 WILD-TYPE        6
D89V13, multiclass

Clustering(90) Variable = CTRC MUTATION ANALYSIS
D90V1, survival
                sevent
clus2              0   1
  CTRC MUTATED     1   3
  CTRC WILD-TYPE 102  47
  CTRC MUTATED CTRC WILD-TYPE 
             4            149 
  CTRC MUTATED CTRC WILD-TYPE 
             3             47 
$`CTRC MUTATED`
TCGA-05-4396 TCGA-49-4488 TCGA-50-5045 TCGA-64-5781 
        9.96        28.57        71.47        39.52 

$`CTRC WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CTRC MUTATED CTRC WILD-TYPE 
          9.96           0.07 
  CTRC MUTATED CTRC WILD-TYPE 
         71.47         120.79 
  CTRC MUTATED CTRC WILD-TYPE 
        34.045         14.070 
[1] "10.0 - 71.5 (34.0)" "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6836 
"CTRC WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6836 
"CTRC WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6836 
"CTRC WILD-TYPE" 
[1] "hr=" "1.2"
D90V2, continuous
D90V3, binary
                cls
clus              0  1
  CTRC MUTATED    3  1
  CTRC WILD-TYPE 90 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      3    1
  CTRC WILD-TYPE   90   78
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D90V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CTRC MUTATED                            0                                 2
  CTRC WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CTRC MUTATED                                                    2
  CTRC WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CTRC MUTATED                                            0
  CTRC WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CTRC MUTATED                                               0
  CTRC WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CTRC MUTATED                                0
  CTRC WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CTRC MUTATED                                    0
  CTRC WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CTRC MUTATED                              0                             0
  CTRC WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CTRC MUTATED                                               0
  CTRC WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CTRC MUTATED                              0
  CTRC WILD-TYPE                            2
D90V5, multiclass
D90V6, binary
                cls
clus               0   1
  CTRC MUTATED     1   3
  CTRC WILD-TYPE  11 157
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      1    3
  CTRC WILD-TYPE   11  157
     clus
vv    CTRC MUTATED CTRC WILD-TYPE
  NO             1             11
  YES            3            157
D90V7, continuous
[1] "Remove cluster labels:" "CTRC MUTATED"          
clus
  CTRC MUTATED CTRC WILD-TYPE 
             2            110 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4405     TCGA-05-4410     TCGA-05-4415 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4417     TCGA-05-4418     TCGA-05-4420     TCGA-05-4422 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4425     TCGA-05-4426     TCGA-05-4427 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4432     TCGA-05-4433     TCGA-05-4434 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-05-5428 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4629     TCGA-38-4631     TCGA-38-4632 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2666     TCGA-44-2668     TCGA-44-3396 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3398     TCGA-44-3918     TCGA-44-4112     TCGA-44-5643 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6146 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4490     TCGA-49-4494     TCGA-49-4505 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4514 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6742     TCGA-49-6743     TCGA-49-6744     TCGA-49-6745 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6767     TCGA-50-5051     TCGA-50-5072     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-6590 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1596     TCGA-55-6543     TCGA-64-1676     TCGA-64-1677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-64-5774     TCGA-64-5775 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5815     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-75-5122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-75-5125     TCGA-75-5126     TCGA-75-6203     TCGA-75-6206 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-75-6207     TCGA-75-6211     TCGA-80-5611     TCGA-91-6829 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6835     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" 
D90V8, continuous
[1] "Remove cluster labels:" "CTRC MUTATED"          
clus
  CTRC MUTATED CTRC WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4405     TCGA-05-4410 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4424     TCGA-05-4427 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4433     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-55-5899 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-1677     TCGA-64-1678 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5779     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" 
                vv
clus              M0  M1  MX
  CTRC MUTATED     3   0   1
  CTRC WILD-TYPE 135   9  22
D90V9, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  M0            3            135
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  CTRC MUTATED    2  2  0  0  0
  CTRC WILD-TYPE 93 35 34  1  4
D90V10, multiclass
                vv
clus              R0  R1  R2  RX
  CTRC MUTATED     3   0   0   0
  CTRC WILD-TYPE 102   5   4  10
D90V11, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  R0            3            102
  R1            0              5
  R2            0              4
  RX            0             10
D90V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CTRC MUTATED          2        1         0         0          0          1
  CTRC WILD-TYPE       35       51        10        24         33          5
                vv
clus             STAGE IV
  CTRC MUTATED          0
  CTRC WILD-TYPE        9
D90V13, multiclass

Clustering(91) Variable = TMTC1 MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   15  5
  TMTC1 WILD-TYPE 88 45
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             20             133 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              5              45 
$`TMTC1 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4420 
        3.98        37.02         9.96        47.05         2.96        29.95 
TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-44-3918 TCGA-50-5045 
       21.99        26.01        25.02        97.74         6.44        71.47 
TCGA-50-5941 TCGA-50-5942 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4668 
        9.37         4.44        16.67        39.52        20.02        15.35 
TCGA-73-4670 TCGA-91-6829 
        0.46        41.33 

$`TMTC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4402 
       38.07        19.92        14.01        45.01        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05        14.93         8.98        12.00        30.02 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        12.99         4.93        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
       35.87        77.88        21.47         8.45        15.12        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 
       39.09        37.02        83.84         0.10        30.44         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           0.46            0.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          97.74          120.79 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
         21.005          14.010 
[1] "0.5 - 97.7 (21.0)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
[1] "hr=" "1.8"
D91V2, continuous
D91V3, binary
                 cls
clus               0  1
  TMTC1 MUTATED   16  6
  TMTC1 WILD-TYPE 77 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     16    6
  TMTC1 WILD-TYPE   77   73
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE            16              77
  MALE               6              73
D91V4, continuous
[1] "Remove cluster labels:" "TMTC1 MUTATED"         
clus
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TMTC1 MUTATED                            1                                 9
  TMTC1 WILD-TYPE                          1                                30
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMTC1 MUTATED                                                    9
  TMTC1 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TMTC1 MUTATED                                            0
  TMTC1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TMTC1 MUTATED                                               1
  TMTC1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TMTC1 MUTATED                                0
  TMTC1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TMTC1 MUTATED                                    1
  TMTC1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TMTC1 MUTATED                              0                             1
  TMTC1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TMTC1 MUTATED                                               0
  TMTC1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TMTC1 MUTATED                              0
  TMTC1 WILD-TYPE                            2
D91V5, multiclass
D91V6, binary
                 cls
clus                0   1
  TMTC1 MUTATED     3  19
  TMTC1 WILD-TYPE   9 141
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      3   19
  TMTC1 WILD-TYPE    9  141
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              3               9
  YES            19             141
D91V7, continuous
D91V8, continuous
                 vv
clus               M0  M1  MX
  TMTC1 MUTATED    19   2   1
  TMTC1 WILD-TYPE 119   7  22
D91V9, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  M0            19             119
  M1             2               7
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  TMTC1 MUTATED   11  6  4  1  0
  TMTC1 WILD-TYPE 84 31 30  0  4
D91V10, multiclass
                 vv
clus              R0 R1 R2 RX
  TMTC1 MUTATED   15  1  2  0
  TMTC1 WILD-TYPE 90  4  2 10
D91V11, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  R0            15              90
  R1             1               4
  R2             2               2
  RX             0              10
D91V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TMTC1 MUTATED          3        6         0         3          4          3
  TMTC1 WILD-TYPE       34       46        10        21         29          3
                 vv
clus              STAGE IV
  TMTC1 MUTATED          2
  TMTC1 WILD-TYPE        7
D91V13, multiclass

Clustering(92) Variable = ITGAX MUTATION ANALYSIS
D92V1, survival
                 sevent
clus2              0  1
  ITGAX MUTATED   11  5
  ITGAX WILD-TYPE 92 45
  ITGAX MUTATED ITGAX WILD-TYPE 
             16             137 
  ITGAX MUTATED ITGAX WILD-TYPE 
              5              45 
$`ITGAX MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4415 TCGA-05-4418 
        3.98        19.92        14.01        47.05         2.96         8.98 
TCGA-05-4427 TCGA-05-4430 TCGA-35-5375 TCGA-38-4626 TCGA-44-2668 TCGA-44-6777 
       26.01        25.02         8.68       120.79         8.09        32.45 
TCGA-50-5044 TCGA-55-1595 TCGA-71-6725 TCGA-73-4670 
       20.48        48.62         2.01         0.46 

$`ITGAX WILD-TYPE`
TCGA-05-4249 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 
       38.07        45.01        37.02         9.96        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05        14.93        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       21.99        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95        97.74        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       12.16         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 
       12.66         5.29         4.60        13.87        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ITGAX MUTATED ITGAX WILD-TYPE 
           0.46            0.07 
  ITGAX MUTATED ITGAX WILD-TYPE 
         120.79           97.74 
  ITGAX MUTATED ITGAX WILD-TYPE 
         16.965          14.930 
[1] "0.5 - 120.8 (17.0)" "0.1 - 97.7 (14.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ITGAX WILD-TYPE"   "ITGAX MUTATED"   "ITGAX MUTATED"   "ITGAX MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ITGAX MUTATED"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6836 
"ITGAX WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ITGAX WILD-TYPE"   "ITGAX MUTATED"   "ITGAX MUTATED"   "ITGAX MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ITGAX MUTATED"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6836 
"ITGAX WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ITGAX WILD-TYPE"   "ITGAX MUTATED"   "ITGAX MUTATED"   "ITGAX MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ITGAX MUTATED"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6836 
"ITGAX WILD-TYPE" 
[1] "hr=" "1.2"
D92V2, continuous
D92V3, binary
                 cls
clus               0  1
  ITGAX MUTATED   10  7
  ITGAX WILD-TYPE 83 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ITGAX MUTATED     10    7
  ITGAX WILD-TYPE   83   72
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  FEMALE            10              83
  MALE               7              72
D92V4, continuous
[1] "Remove cluster labels:" "ITGAX MUTATED"         
clus
  ITGAX MUTATED ITGAX WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ITGAX MUTATED                            0                                 8
  ITGAX WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ITGAX MUTATED                                                    7
  ITGAX WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ITGAX MUTATED                                            0
  ITGAX WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ITGAX MUTATED                                               0
  ITGAX WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ITGAX MUTATED                                1
  ITGAX WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ITGAX MUTATED                                    0
  ITGAX WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ITGAX MUTATED                              0                             1
  ITGAX WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ITGAX MUTATED                                               0
  ITGAX WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ITGAX MUTATED                              0
  ITGAX WILD-TYPE                            2
D92V5, multiclass
D92V6, binary
                 cls
clus                0   1
  ITGAX MUTATED     1  16
  ITGAX WILD-TYPE  11 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ITGAX MUTATED      1   16
  ITGAX WILD-TYPE   11  144
     clus
vv    ITGAX MUTATED ITGAX WILD-TYPE
  NO              1              11
  YES            16             144
D92V7, continuous
D92V8, continuous
                 vv
clus               M0  M1  MX
  ITGAX MUTATED    15   1   1
  ITGAX WILD-TYPE 123   8  22
D92V9, multiclass
    clus
vv   ITGAX MUTATED ITGAX WILD-TYPE
  M0            15             123
  M1             1               8
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  ITGAX MUTATED    8  3  4  1  1
  ITGAX WILD-TYPE 87 34 30  0  3
D92V10, multiclass
                 vv
clus              R0 R1 R2 RX
  ITGAX MUTATED   10  0  1  3
  ITGAX WILD-TYPE 95  5  3  7
D92V11, multiclass
    clus
vv   ITGAX MUTATED ITGAX WILD-TYPE
  R0            10              95
  R1             0               5
  R2             1               3
  RX             3               7
D92V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ITGAX MUTATED          2        5         1         1          4          3
  ITGAX WILD-TYPE       35       47         9        23         29          3
                 vv
clus              STAGE IV
  ITGAX MUTATED          1
  ITGAX WILD-TYPE        8
D92V13, multiclass

Clustering(93) Variable = CDH6 MUTATION ANALYSIS
D93V1, survival
                sevent
clus2             0  1
  CDH6 MUTATED   12  4
  CDH6 WILD-TYPE 91 46
  CDH6 MUTATED CDH6 WILD-TYPE 
            16            137 
  CDH6 MUTATED CDH6 WILD-TYPE 
             4             46 
$`CDH6 MUTATED`
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4427 TCGA-35-5375 TCGA-38-4629 
        8.02        20.05         2.96        26.01         8.68        28.37 
TCGA-44-2656 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-6145 TCGA-44-6147 
       19.10         8.09         6.44         4.60         3.35         7.76 
TCGA-49-6742 TCGA-55-5899 TCGA-91-6829 TCGA-91-6835 
       15.02         2.86        41.33         1.15 

$`CDH6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 
        9.96        24.03        47.05        19.00        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
      120.79        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 
       13.15         3.19        10.22         8.32         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        6.84         0.30         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        43.20        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6836 
        4.01         1.25         1.22         1.28         0.36 

  CDH6 MUTATED CDH6 WILD-TYPE 
          1.15           0.07 
  CDH6 MUTATED CDH6 WILD-TYPE 
         41.33         120.79 
  CDH6 MUTATED CDH6 WILD-TYPE 
         8.055         15.020 
[1] "1.1 - 41.3 (8.1)"   "0.1 - 120.8 (15.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-91-6836 
"CDH6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-91-6836 
"CDH6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-91-6836 
"CDH6 WILD-TYPE" 
[1] "hr=" "1.7"
D93V2, continuous
D93V3, binary
                cls
clus              0  1
  CDH6 MUTATED    9  8
  CDH6 WILD-TYPE 84 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH6 MUTATED      9    8
  CDH6 WILD-TYPE   84   71
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  FEMALE            9             84
  MALE              8             71
D93V4, continuous
[1] "Remove cluster labels:" "CDH6 MUTATED"          
clus
  CDH6 MUTATED CDH6 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-64-1677     TCGA-64-5778 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDH6 MUTATED                            0                                 4
  CDH6 WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDH6 MUTATED                                                   10
  CDH6 WILD-TYPE                                                104
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDH6 MUTATED                                            0
  CDH6 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDH6 MUTATED                                               1
  CDH6 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CDH6 MUTATED                                0
  CDH6 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CDH6 MUTATED                                    0
  CDH6 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDH6 MUTATED                              0                             1
  CDH6 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDH6 MUTATED                                               0
  CDH6 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CDH6 MUTATED                              1
  CDH6 WILD-TYPE                            1
D93V5, multiclass
D93V6, binary
                cls
clus               0   1
  CDH6 MUTATED     0  17
  CDH6 WILD-TYPE  12 143
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH6 MUTATED      0   17
  CDH6 WILD-TYPE   12  143
     clus
vv    CDH6 MUTATED CDH6 WILD-TYPE
  NO             0             12
  YES           17            143
D93V7, continuous
D93V8, continuous
                vv
clus              M0  M1  MX
  CDH6 MUTATED    13   1   3
  CDH6 WILD-TYPE 125   8  20
D93V9, multiclass
    clus
vv   CDH6 MUTATED CDH6 WILD-TYPE
  M0           13            125
  M1            1              8
  MX            3             20
                vv
clus             N0 N1 N2 N3 NX
  CDH6 MUTATED    9  3  3  0  2
  CDH6 WILD-TYPE 86 34 31  1  2
D93V10, multiclass
                vv
clus             R0 R1 R2 RX
  CDH6 MUTATED    9  0  2  0
  CDH6 WILD-TYPE 96  5  2 10
D93V11, multiclass
    clus
vv   CDH6 MUTATED CDH6 WILD-TYPE
  R0            9             96
  R1            0              5
  R2            2              2
  RX            0             10
D93V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CDH6 MUTATED          5        5         0         3          2          1
  CDH6 WILD-TYPE       32       47        10        21         31          5
                vv
clus             STAGE IV
  CDH6 MUTATED          1
  CDH6 WILD-TYPE        8
D93V13, multiclass

Clustering(94) Variable = NALCN MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  NALCN MUTATED   14  8
  NALCN WILD-TYPE 89 42
  NALCN MUTATED NALCN WILD-TYPE 
             22             131 
  NALCN MUTATED NALCN WILD-TYPE 
              8              42 
$`NALCN MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       38.07        19.92         9.96        24.03        30.02        26.01 
TCGA-05-4432 TCGA-38-4631 TCGA-44-2655 TCGA-44-4112 TCGA-44-6774 TCGA-44-6777 
       25.02        11.64        18.87         4.60         5.42        32.45 
TCGA-49-4488 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5941 
       28.57        15.02        12.13         4.93        20.48         9.37 
TCGA-50-6592 TCGA-55-5899 TCGA-67-3774 TCGA-73-4677 
       25.51         2.86        12.66         1.25 

$`NALCN WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        14.01        45.01        37.02        47.05         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       12.00        21.99        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
       49.02        28.37        35.28        44.61         5.19        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        10.22         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 
       29.46        29.75        43.20        12.99        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NALCN MUTATED NALCN WILD-TYPE 
           1.25            0.07 
  NALCN MUTATED NALCN WILD-TYPE 
          38.07          120.79 
  NALCN MUTATED NALCN WILD-TYPE 
         16.945          14.070 
[1] "1.2 - 38.1 (16.9)"  "0.1 - 120.8 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-91-6836 
"NALCN WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-91-6836 
"NALCN WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-91-6836 
"NALCN WILD-TYPE" 
[1] "hr=" "1.7"
D94V2, continuous
D94V3, binary
                 cls
clus               0  1
  NALCN MUTATED   12 12
  NALCN WILD-TYPE 81 67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     12   12
  NALCN WILD-TYPE   81   67
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE            12              81
  MALE              12              67
D94V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NALCN MUTATED                            0                                 7
  NALCN WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NALCN MUTATED                                                   14
  NALCN WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NALCN MUTATED                                            0
  NALCN WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NALCN MUTATED                                               0
  NALCN WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NALCN MUTATED                                1
  NALCN WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NALCN MUTATED                                    0
  NALCN WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NALCN MUTATED                              0                             1
  NALCN WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NALCN MUTATED                                               0
  NALCN WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  NALCN MUTATED                              1
  NALCN WILD-TYPE                            1
D94V5, multiclass
D94V6, binary
                 cls
clus                0   1
  NALCN MUTATED     1  23
  NALCN WILD-TYPE  11 137
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      1   23
  NALCN WILD-TYPE   11  137
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  NO              1              11
  YES            23             137
D94V7, continuous
D94V8, continuous
                 vv
clus               M0  M1  MX
  NALCN MUTATED    18   1   5
  NALCN WILD-TYPE 120   8  18
D94V9, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  M0            18             120
  M1             1               8
  MX             5              18
                 vv
clus              N0 N1 N2 N3 NX
  NALCN MUTATED   11  7  5  0  1
  NALCN WILD-TYPE 84 30 29  1  3
D94V10, multiclass
                 vv
clus              R0 R1 R2 RX
  NALCN MUTATED   12  1  0  2
  NALCN WILD-TYPE 93  4  4  8
D94V11, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  R0            12              93
  R1             1               4
  R2             0               4
  RX             2               8
D94V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NALCN MUTATED          4        8         0         5          4          2
  NALCN WILD-TYPE       33       44        10        19         29          4
                 vv
clus              STAGE IV
  NALCN MUTATED          1
  NALCN WILD-TYPE        8
D94V13, multiclass

Clustering(95) Variable = COL5A1 MUTATION ANALYSIS
D95V1, survival
                  sevent
clus2               0  1
  COL5A1 MUTATED    5  4
  COL5A1 WILD-TYPE 98 46
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               9              144 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               4               46 
$`COL5A1 MUTATED`
TCGA-05-4382 TCGA-05-4418 TCGA-38-4631 TCGA-44-2656 TCGA-49-4487 TCGA-50-5933 
       19.92         8.98        11.64        19.10        28.11        77.88 
TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 
       30.44        20.02        13.87 

$`COL5A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       12.66         5.29         4.60         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  COL5A1 MUTATED COL5A1 WILD-TYPE 
            8.98             0.07 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
           77.88           120.79 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
          19.920           14.055 
[1] "9.0 - 77.9 (19.9)"  "0.1 - 120.8 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6836 
"COL5A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6836 
"COL5A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6836 
"COL5A1 WILD-TYPE" 
[1] "hr=" "1.1"
D95V2, continuous
D95V3, binary
                  cls
clus                0  1
  COL5A1 MUTATED    5  8
  COL5A1 WILD-TYPE 88 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A1 MUTATED      5    8
  COL5A1 WILD-TYPE   88   71
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  FEMALE              5               88
  MALE                8               71
D95V4, continuous
[1] "Remove cluster labels:" "COL5A1 MUTATED"        
clus
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL5A1 MUTATED                            0                                 3
  COL5A1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL5A1 MUTATED                                                    8
  COL5A1 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL5A1 MUTATED                                            0
  COL5A1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL5A1 MUTATED                                               1
  COL5A1 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  COL5A1 MUTATED                                0
  COL5A1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  COL5A1 MUTATED                                    0
  COL5A1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL5A1 MUTATED                              0                             1
  COL5A1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL5A1 MUTATED                                               0
  COL5A1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  COL5A1 MUTATED                              0
  COL5A1 WILD-TYPE                            2
D95V5, multiclass
D95V6, binary
                  cls
clus                 0   1
  COL5A1 MUTATED     0  13
  COL5A1 WILD-TYPE  12 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A1 MUTATED      0   13
  COL5A1 WILD-TYPE   12  147
     clus
vv    COL5A1 MUTATED COL5A1 WILD-TYPE
  NO               0               12
  YES             13              147
D95V7, continuous
D95V8, continuous
                  vv
clus                M0  M1  MX
  COL5A1 MUTATED    13   0   0
  COL5A1 WILD-TYPE 125   9  23
D95V9, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  M0             13              125
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  COL5A1 MUTATED    9  1  3  0  0
  COL5A1 WILD-TYPE 86 36 31  1  4
D95V10, multiclass
                  vv
clus               R0 R1 R2 RX
  COL5A1 MUTATED    9  0  1  1
  COL5A1 WILD-TYPE 96  5  3  9
D95V11, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  R0              9               96
  R1              0                5
  R2              1                3
  RX              1                9
D95V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL5A1 MUTATED          2        7         0         1          2          1
  COL5A1 WILD-TYPE       35       45        10        23         31          5
                  vv
clus               STAGE IV
  COL5A1 MUTATED          0
  COL5A1 WILD-TYPE        9
D95V13, multiclass

Clustering(96) Variable = SVEP1 MUTATION ANALYSIS
D96V1, survival
                 sevent
clus2              0  1
  SVEP1 MUTATED    8 10
  SVEP1 WILD-TYPE 95 40
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             18             135 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             10              40 
$`SVEP1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
        3.98        19.92         9.96         2.96        14.93        29.95 
TCGA-38-4632 TCGA-44-2657 TCGA-44-6776 TCGA-49-4487 TCGA-49-4505 TCGA-49-4510 
       44.61        13.15        63.72        28.11        14.07        29.46 
TCGA-64-1676 TCGA-64-5815 TCGA-73-4658 TCGA-73-4662 TCGA-73-4677 TCGA-91-6829 
       56.81         7.33        52.57        29.95         1.25        41.33 

$`SVEP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        45.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 
        8.02        19.00        20.05         8.98        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
       12.66         5.29         4.60        13.87         2.01        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SVEP1 MUTATED SVEP1 WILD-TYPE 
           1.25            0.07 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
          63.72          120.79 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
         24.015          14.010 
[1] "1.2 - 63.7 (24.0)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-91-6836 
"SVEP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-91-6836 
"SVEP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-91-6836 
"SVEP1 WILD-TYPE" 
[1] "hr=" "1.4"
D96V2, continuous
D96V3, binary
                 cls
clus               0  1
  SVEP1 MUTATED   10 11
  SVEP1 WILD-TYPE 83 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SVEP1 MUTATED     10   11
  SVEP1 WILD-TYPE   83   68
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  FEMALE            10              83
  MALE              11              68
D96V4, continuous
[1] "Remove cluster labels:" "SVEP1 MUTATED"         
clus
  SVEP1 MUTATED SVEP1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SVEP1 MUTATED                            0                                 8
  SVEP1 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SVEP1 MUTATED                                                   11
  SVEP1 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SVEP1 MUTATED                                            0
  SVEP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SVEP1 MUTATED                                               1
  SVEP1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SVEP1 MUTATED                                0
  SVEP1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SVEP1 MUTATED                                    0
  SVEP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SVEP1 MUTATED                              0                             1
  SVEP1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SVEP1 MUTATED                                               0
  SVEP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SVEP1 MUTATED                              0
  SVEP1 WILD-TYPE                            2
D96V5, multiclass
D96V6, binary
                 cls
clus                0   1
  SVEP1 MUTATED     0  21
  SVEP1 WILD-TYPE  12 139
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SVEP1 MUTATED      0   21
  SVEP1 WILD-TYPE   12  139
     clus
vv    SVEP1 MUTATED SVEP1 WILD-TYPE
  NO              0              12
  YES            21             139
D96V7, continuous
D96V8, continuous
                 vv
clus               M0  M1  MX
  SVEP1 MUTATED    18   1   2
  SVEP1 WILD-TYPE 120   8  21
D96V9, multiclass
    clus
vv   SVEP1 MUTATED SVEP1 WILD-TYPE
  M0            18             120
  M1             1               8
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  SVEP1 MUTATED   11  6  3  0  1
  SVEP1 WILD-TYPE 84 31 31  1  3
D96V10, multiclass
                 vv
clus              R0 R1 R2 RX
  SVEP1 MUTATED   16  0  2  1
  SVEP1 WILD-TYPE 89  5  2  9
D96V11, multiclass
    clus
vv   SVEP1 MUTATED SVEP1 WILD-TYPE
  R0            16              89
  R1             0               5
  R2             2               2
  RX             1               9
D96V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SVEP1 MUTATED          5        7         0         3          2          3
  SVEP1 WILD-TYPE       32       45        10        21         31          3
                 vv
clus              STAGE IV
  SVEP1 MUTATED          1
  SVEP1 WILD-TYPE        8
D96V13, multiclass

Clustering(97) Variable = OR5I1 MUTATION ANALYSIS
D97V1, survival
                 sevent
clus2              0  1
  OR5I1 MUTATED    5  3
  OR5I1 WILD-TYPE 98 47
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              8             145 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              3              47 
$`OR5I1 MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-05-4424 TCGA-44-6144 TCGA-49-6742 TCGA-50-5933 
        9.96         8.98        30.02         0.30        15.02        77.88 
TCGA-50-5941 TCGA-64-5781 
        9.37        39.52 

$`OR5I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       14.93        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5I1 MUTATED OR5I1 WILD-TYPE 
           0.30            0.07 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          77.88          120.79 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          12.49           14.93 
[1] "0.3 - 77.9 (12.5)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
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"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
[1] "hr=" "1.2"
D97V2, continuous
D97V3, binary
                 cls
clus               0  1
  OR5I1 MUTATED    3  8
  OR5I1 WILD-TYPE 90 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      3    8
  OR5I1 WILD-TYPE   90   71
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D97V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5I1 MUTATED                            0                                 5
  OR5I1 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5I1 MUTATED                                                    5
  OR5I1 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5I1 MUTATED                                            0
  OR5I1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5I1 MUTATED                                               0
  OR5I1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5I1 MUTATED                                0
  OR5I1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5I1 MUTATED                                    0
  OR5I1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5I1 MUTATED                              0                             0
  OR5I1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5I1 MUTATED                                               0
  OR5I1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR5I1 MUTATED                              1
  OR5I1 WILD-TYPE                            1
D97V5, multiclass
D97V6, binary
                 cls
clus                0   1
  OR5I1 MUTATED     0  11
  OR5I1 WILD-TYPE  12 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      0   11
  OR5I1 WILD-TYPE   12  149
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  NO              0              12
  YES            11             149
D97V7, continuous
D97V8, continuous
                 vv
clus               M0  M1  MX
  OR5I1 MUTATED    10   0   1
  OR5I1 WILD-TYPE 128   9  22
D97V9, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  M0            10             128
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  OR5I1 MUTATED    4  3  4  0  0
  OR5I1 WILD-TYPE 91 34 30  1  4
D97V10, multiclass
                 vv
clus              R0 R1 R2 RX
  OR5I1 MUTATED    6  1  0  1
  OR5I1 WILD-TYPE 99  4  4  9
D97V11, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  R0             6              99
  R1             1               4
  R2             0               4
  RX             1               9
D97V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR5I1 MUTATED          1        2         1         2          3          2
  OR5I1 WILD-TYPE       36       50         9        22         30          4
                 vv
clus              STAGE IV
  OR5I1 MUTATED          0
  OR5I1 WILD-TYPE        9
D97V13, multiclass

Clustering(98) Variable = EPS8L3 MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2                0   1
  EPS8L3 MUTATED     2   1
  EPS8L3 WILD-TYPE 101  49
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               3              150 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1               49 
$`EPS8L3 MUTATED`
TCGA-35-4123 TCGA-55-1592 TCGA-91-6835 
        5.95        23.05         1.15 

$`EPS8L3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        4.01         1.25         1.22        41.33         1.28         0.36 

  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
            1.15             0.07 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
           23.05           120.79 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
           5.950           14.945 
[1] "1.1 - 23.1 (6.0)"   "0.1 - 120.8 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" 
      TCGA-91-6836 
"EPS8L3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" 
      TCGA-91-6836 
"EPS8L3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" 
      TCGA-91-6836 
"EPS8L3 WILD-TYPE" 
[1] "hr=" "3"  
D98V2, continuous
D98V3, binary
                  cls
clus                0  1
  EPS8L3 MUTATED    1  3
  EPS8L3 WILD-TYPE 92 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L3 MUTATED      1    3
  EPS8L3 WILD-TYPE   92   76
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  FEMALE              1               92
  MALE                3               76
D98V4, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPS8L3 MUTATED                            0                                 1
  EPS8L3 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPS8L3 MUTATED                                                    3
  EPS8L3 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPS8L3 MUTATED                                            0
  EPS8L3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPS8L3 MUTATED                                               0
  EPS8L3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  EPS8L3 MUTATED                                0
  EPS8L3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  EPS8L3 MUTATED                                    0
  EPS8L3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPS8L3 MUTATED                              0                             0
  EPS8L3 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPS8L3 MUTATED                                               0
  EPS8L3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  EPS8L3 MUTATED                              0
  EPS8L3 WILD-TYPE                            2
D98V5, multiclass
D98V6, binary
                  cls
clus                 0   1
  EPS8L3 MUTATED     0   4
  EPS8L3 WILD-TYPE  12 156
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L3 MUTATED      0    4
  EPS8L3 WILD-TYPE   12  156
     clus
vv    EPS8L3 MUTATED EPS8L3 WILD-TYPE
  NO               0               12
  YES              4              156
D98V7, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2              110 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4396 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4397       TCGA-05-4398       TCGA-05-4405       TCGA-05-4410 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-5375       TCGA-38-4625 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4629       TCGA-38-4631       TCGA-38-4632 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-4112       TCGA-44-5643 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6146 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4490       TCGA-49-4494       TCGA-49-4505 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5051       TCGA-50-5072       TCGA-50-5931 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-6590 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6543       TCGA-64-1676       TCGA-64-1677 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-5122       TCGA-75-5125       TCGA-75-5126       TCGA-75-6203 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-80-5611 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
D98V8, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-5375 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1594 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
                  vv
clus                M0  M1  MX
  EPS8L3 MUTATED     3   0   1
  EPS8L3 WILD-TYPE 135   9  22
D98V9, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  M0              3              135
  M1              0                9
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  EPS8L3 MUTATED    3  0  1  0  0
  EPS8L3 WILD-TYPE 92 37 33  1  4
D98V10, multiclass
                  vv
clus                R0  R1  R2  RX
  EPS8L3 MUTATED     3   0   0   0
  EPS8L3 WILD-TYPE 102   5   4  10
D98V11, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  R0              3              102
  R1              0                5
  R2              0                4
  RX              0               10
D98V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EPS8L3 MUTATED          3        0         0         0          0          1
  EPS8L3 WILD-TYPE       34       52        10        24         33          5
                  vv
clus               STAGE IV
  EPS8L3 MUTATED          0
  EPS8L3 WILD-TYPE        9
D98V13, multiclass

Clustering(99) Variable = CYP1A1 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2                0   1
  CYP1A1 MUTATED     3   1
  CYP1A1 WILD-TYPE 100  49
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              149 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               1               49 
$`CYP1A1 MUTATED`
TCGA-05-4430 TCGA-55-1592 TCGA-67-3771 TCGA-73-4668 
       25.02        23.05        20.02        15.35 

$`CYP1A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
           15.35             0.07 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
           25.02           120.79 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
          21.535           14.040 
[1] "15.3 - 25.0 (21.5)" "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6836 
"CYP1A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6836 
"CYP1A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6836 
"CYP1A1 WILD-TYPE" 
[1] "hr=" "1.1"
D99V2, continuous
D99V3, binary
                  cls
clus                0  1
  CYP1A1 MUTATED    3  1
  CYP1A1 WILD-TYPE 90 78
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP1A1 MUTATED      3    1
  CYP1A1 WILD-TYPE   90   78
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  FEMALE              3               90
  MALE                1               78
D99V4, continuous
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CYP1A1 MUTATED                            0                                 1
  CYP1A1 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYP1A1 MUTATED                                                    2
  CYP1A1 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CYP1A1 MUTATED                                            0
  CYP1A1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CYP1A1 MUTATED                                               0
  CYP1A1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CYP1A1 MUTATED                                0
  CYP1A1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CYP1A1 MUTATED                                    1
  CYP1A1 WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CYP1A1 MUTATED                              0                             0
  CYP1A1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CYP1A1 MUTATED                                               0
  CYP1A1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CYP1A1 MUTATED                              0
  CYP1A1 WILD-TYPE                            2
D99V5, multiclass
D99V6, binary
                  cls
clus                 0   1
  CYP1A1 MUTATED     0   4
  CYP1A1 WILD-TYPE  12 156
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP1A1 MUTATED      0    4
  CYP1A1 WILD-TYPE   12  156
     clus
vv    CYP1A1 MUTATED CYP1A1 WILD-TYPE
  NO               0               12
  YES              4              156
D99V7, continuous
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               2              110 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4396 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4397       TCGA-05-4398       TCGA-05-4405       TCGA-05-4410 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4629       TCGA-38-4631       TCGA-38-4632 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-4112       TCGA-44-5643 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6146 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4490       TCGA-49-4494       TCGA-49-4505 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5051       TCGA-50-5072       TCGA-50-5931 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-6590 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6543       TCGA-64-1676       TCGA-64-1677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-75-5122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-6203       TCGA-75-6206 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-80-5611       TCGA-91-6829 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
D99V8, continuous
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
                  vv
clus                M0  M1  MX
  CYP1A1 MUTATED     4   0   0
  CYP1A1 WILD-TYPE 134   9  23
D99V9, multiclass
    clus
vv   CYP1A1 MUTATED CYP1A1 WILD-TYPE
  M0              4              134
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  CYP1A1 MUTATED    3  1  0  0  0
  CYP1A1 WILD-TYPE 92 36 34  1  4
D99V10, multiclass
                  vv
clus                R0  R1  R2  RX
  CYP1A1 MUTATED     4   0   0   0
  CYP1A1 WILD-TYPE 101   5   4  10
D99V11, multiclass
    clus
vv   CYP1A1 MUTATED CYP1A1 WILD-TYPE
  R0              4              101
  R1              0                5
  R2              0                4
  RX              0               10
D99V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CYP1A1 MUTATED          2        1         0         1          0          0
  CYP1A1 WILD-TYPE       35       51        10        23         33          6
                  vv
clus               STAGE IV
  CYP1A1 MUTATED          0
  CYP1A1 WILD-TYPE        9
D99V13, multiclass

Clustering(100) Variable = DEFB112 MUTATION ANALYSIS
D100V1, survival
                   sevent
clus2                 0   1
  DEFB112 MUTATED     3   1
  DEFB112 WILD-TYPE 100  49
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               149 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                49 
$`DEFB112 MUTATED`
TCGA-44-2656 TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 
       19.10        23.05        16.67        20.28 

$`DEFB112 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       39.09        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  DEFB112 MUTATED DEFB112 WILD-TYPE 
            16.67              0.07 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            23.05            120.79 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            19.69             14.04 
[1] "16.7 - 23.1 (19.7)" "0.1 - 120.8 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
[1] "hr=" "1"  
D100V2, continuous
D100V3, binary
                   cls
clus                 0  1
  DEFB112 MUTATED    1  3
  DEFB112 WILD-TYPE 92 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      1    3
  DEFB112 WILD-TYPE   92   76
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  FEMALE               1                92
  MALE                 3                76
D100V4, continuous
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  DEFB112 MUTATED                            1
  DEFB112 WILD-TYPE                          1
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  DEFB112 MUTATED                                   0
  DEFB112 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DEFB112 MUTATED                                                    3
  DEFB112 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DEFB112 MUTATED                                            0
  DEFB112 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DEFB112 MUTATED                                               0
  DEFB112 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  DEFB112 MUTATED                                0
  DEFB112 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  DEFB112 MUTATED                                    0
  DEFB112 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DEFB112 MUTATED                              0                             0
  DEFB112 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DEFB112 MUTATED                                               0
  DEFB112 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  DEFB112 MUTATED                              0
  DEFB112 WILD-TYPE                            2
D100V5, multiclass
D100V6, binary
                   cls
clus                  0   1
  DEFB112 MUTATED     2   2
  DEFB112 WILD-TYPE  10 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      2    2
  DEFB112 WILD-TYPE   10  158
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  NO                2                10
  YES               2               158
D100V7, continuous
D100V8, continuous
                   vv
clus                 M0  M1  MX
  DEFB112 MUTATED     3   1   0
  DEFB112 WILD-TYPE 135   8  23
D100V9, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  M0               3               135
  M1               1                 8
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  DEFB112 MUTATED    3  0  1  0  0
  DEFB112 WILD-TYPE 92 37 33  1  4
D100V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  DEFB112 MUTATED     3   0   0   0
  DEFB112 WILD-TYPE 102   5   4  10
D100V11, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  R0               3               102
  R1               0                 5
  R2               0                 4
  RX               0                10
D100V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DEFB112 MUTATED          1        1         0         0          1          0
  DEFB112 WILD-TYPE       36       51        10        24         32          6
                   vv
clus                STAGE IV
  DEFB112 MUTATED          1
  DEFB112 WILD-TYPE        8
D100V13, multiclass

Clustering(101) Variable = FBXL7 MUTATION ANALYSIS
D101V1, survival
                 sevent
clus2              0  1
  FBXL7 MUTATED    9  6
  FBXL7 WILD-TYPE 94 44
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             15             138 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
              6              44 
$`FBXL7 MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4418 TCGA-05-4426 TCGA-35-4122 
       19.92        45.01        37.02         8.98        26.01         7.36 
TCGA-38-4628 TCGA-38-4631 TCGA-44-6776 TCGA-49-4510 TCGA-50-5933 TCGA-55-5899 
       49.02        11.64        63.72        29.46        77.88         2.86 
TCGA-64-1676 TCGA-67-3771 TCGA-73-4677 
       56.81        20.02         1.25 

$`FBXL7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
        8.02        19.00        20.05         2.96        14.93        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       12.00        30.02        21.99        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84         8.81        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  FBXL7 MUTATED FBXL7 WILD-TYPE 
           1.25            0.07 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
          77.88          120.79 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
         26.010          14.025 
[1] "1.2 - 77.9 (26.0)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "FBXL7 MUTATED"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-91-6836 
"FBXL7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "FBXL7 MUTATED"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-91-6836 
"FBXL7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "FBXL7 MUTATED"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-91-6836 
"FBXL7 WILD-TYPE" 
[1] "hr=" "1.4"
D101V2, continuous
D101V3, binary
                 cls
clus               0  1
  FBXL7 MUTATED    6 11
  FBXL7 WILD-TYPE 87 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXL7 MUTATED      6   11
  FBXL7 WILD-TYPE   87   68
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  FEMALE             6              87
  MALE              11              68
D101V4, continuous
[1] "Remove cluster labels:" "FBXL7 MUTATED"         
clus
  FBXL7 MUTATED FBXL7 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FBXL7 MUTATED                            0                                 6
  FBXL7 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FBXL7 MUTATED                                                   10
  FBXL7 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FBXL7 MUTATED                                            0
  FBXL7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FBXL7 MUTATED                                               0
  FBXL7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  FBXL7 MUTATED                                0
  FBXL7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  FBXL7 MUTATED                                    0
  FBXL7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FBXL7 MUTATED                              0                             0
  FBXL7 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FBXL7 MUTATED                                               1
  FBXL7 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  FBXL7 MUTATED                              0
  FBXL7 WILD-TYPE                            2
D101V5, multiclass
D101V6, binary
                 cls
clus                0   1
  FBXL7 MUTATED     0  17
  FBXL7 WILD-TYPE  12 143
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXL7 MUTATED      0   17
  FBXL7 WILD-TYPE   12  143
     clus
vv    FBXL7 MUTATED FBXL7 WILD-TYPE
  NO              0              12
  YES            17             143
D101V7, continuous
D101V8, continuous
                 vv
clus               M0  M1  MX
  FBXL7 MUTATED    16   0   1
  FBXL7 WILD-TYPE 122   9  22
D101V9, multiclass
    clus
vv   FBXL7 MUTATED FBXL7 WILD-TYPE
  M0            16             122
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  FBXL7 MUTATED   11  3  3  0  0
  FBXL7 WILD-TYPE 84 34 31  1  4
D101V10, multiclass
                 vv
clus              R0 R1 R2 RX
  FBXL7 MUTATED   15  0  0  0
  FBXL7 WILD-TYPE 90  5  4 10
D101V11, multiclass
    clus
vv   FBXL7 MUTATED FBXL7 WILD-TYPE
  R0            15              90
  R1             0               5
  R2             0               4
  RX             0              10
D101V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FBXL7 MUTATED          7        5         0         2          1          2
  FBXL7 WILD-TYPE       30       47        10        22         32          4
                 vv
clus              STAGE IV
  FBXL7 MUTATED          0
  FBXL7 WILD-TYPE        9
D101V13, multiclass

Clustering(102) Variable = TARS2 MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2              0  1
  TARS2 MUTATED    5  2
  TARS2 WILD-TYPE 98 48
  TARS2 MUTATED TARS2 WILD-TYPE 
              7             146 
  TARS2 MUTATED TARS2 WILD-TYPE 
              2              48 
$`TARS2 MUTATED`
TCGA-05-4250 TCGA-05-4389 TCGA-44-4112 TCGA-50-6594 TCGA-55-6642 TCGA-67-3771 
        3.98        45.01         4.60        12.16        32.61        20.02 
TCGA-91-6836 
        0.36 

$`TARS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  TARS2 MUTATED TARS2 WILD-TYPE 
           0.36            0.07 
  TARS2 MUTATED TARS2 WILD-TYPE 
          45.01          120.79 
  TARS2 MUTATED TARS2 WILD-TYPE 
         12.160          14.945 
[1] "0.4 - 45.0 (12.2)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6836 
  "TARS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6836 
  "TARS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6836 
  "TARS2 MUTATED" 
[1] "hr=" "1.1"
D102V2, continuous
D102V3, binary
                 cls
clus               0  1
  TARS2 MUTATED    5  3
  TARS2 WILD-TYPE 88 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TARS2 MUTATED      5    3
  TARS2 WILD-TYPE   88   76
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D102V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TARS2 MUTATED                            0                                 2
  TARS2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TARS2 MUTATED                                                    6
  TARS2 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TARS2 MUTATED                                            0
  TARS2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TARS2 MUTATED                                               0
  TARS2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TARS2 MUTATED                                0
  TARS2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TARS2 MUTATED                                    0
  TARS2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TARS2 MUTATED                              0                             0
  TARS2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TARS2 MUTATED                                               0
  TARS2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TARS2 MUTATED                              0
  TARS2 WILD-TYPE                            2
D102V5, multiclass
D102V6, binary
                 cls
clus                0   1
  TARS2 MUTATED     0   8
  TARS2 WILD-TYPE  12 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TARS2 MUTATED      0    8
  TARS2 WILD-TYPE   12  152
     clus
vv    TARS2 MUTATED TARS2 WILD-TYPE
  NO              0              12
  YES             8             152
D102V7, continuous
D102V8, continuous
                 vv
clus               M0  M1  MX
  TARS2 MUTATED     6   0   2
  TARS2 WILD-TYPE 132   9  21
D102V9, multiclass
    clus
vv   TARS2 MUTATED TARS2 WILD-TYPE
  M0             6             132
  M1             0               9
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  TARS2 MUTATED    6  1  1  0  0
  TARS2 WILD-TYPE 89 36 33  1  4
D102V10, multiclass
                 vv
clus               R0  R1  R2  RX
  TARS2 MUTATED     4   0   1   1
  TARS2 WILD-TYPE 101   5   3   9
D102V11, multiclass
    clus
vv   TARS2 MUTATED TARS2 WILD-TYPE
  R0             4             101
  R1             0               5
  R2             1               3
  RX             1               9
D102V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TARS2 MUTATED          2        4         0         0          2          0
  TARS2 WILD-TYPE       35       48        10        24         31          6
                 vv
clus              STAGE IV
  TARS2 MUTATED          0
  TARS2 WILD-TYPE        9
D102V13, multiclass

Clustering(103) Variable = GPR174 MUTATION ANALYSIS
D103V1, survival
                  sevent
clus2               0  1
  GPR174 MUTATED    4  2
  GPR174 WILD-TYPE 99 48
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              147 
  GPR174 MUTATED GPR174 WILD-TYPE 
               2               48 
$`GPR174 MUTATED`
TCGA-05-4405 TCGA-38-4626 TCGA-49-6743 TCGA-50-5931 TCGA-50-6597 TCGA-91-6829 
       20.05       120.79        12.13         8.78        33.37        41.33 

$`GPR174 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
        9.96        24.03        47.05         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 
        3.88        25.51        11.05        12.16         6.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GPR174 MUTATED GPR174 WILD-TYPE 
            8.78             0.07 
  GPR174 MUTATED GPR174 WILD-TYPE 
          120.79            97.74 
  GPR174 MUTATED GPR174 WILD-TYPE 
           26.71            14.07 
[1] "8.8 - 120.8 (26.7)" "0.1 - 97.7 (14.1)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
[1] "hr=" "1.8"
D103V2, continuous
D103V3, binary
                  cls
clus                0  1
  GPR174 MUTATED    5  1
  GPR174 WILD-TYPE 88 78
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      5    1
  GPR174 WILD-TYPE   88   78
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  FEMALE              5               88
  MALE                1               78
D103V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR174 MUTATED                            0                                 1
  GPR174 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR174 MUTATED                                                    3
  GPR174 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR174 MUTATED                                            0
  GPR174 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR174 MUTATED                                               1
  GPR174 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR174 MUTATED                                1
  GPR174 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR174 MUTATED                                    0
  GPR174 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR174 MUTATED                              0                             0
  GPR174 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR174 MUTATED                                               0
  GPR174 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  GPR174 MUTATED                              0
  GPR174 WILD-TYPE                            2
D103V5, multiclass
D103V6, binary
                  cls
clus                 0   1
  GPR174 MUTATED     0   6
  GPR174 WILD-TYPE  12 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      0    6
  GPR174 WILD-TYPE   12  154
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  NO               0               12
  YES              6              154
D103V7, continuous
D103V8, continuous
                  vv
clus                M0  M1  MX
  GPR174 MUTATED     4   0   2
  GPR174 WILD-TYPE 134   9  21
D103V9, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  M0              4              134
  M1              0                9
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  GPR174 MUTATED    5  0  1  0  0
  GPR174 WILD-TYPE 90 37 33  1  4
D103V10, multiclass
                  vv
clus                R0  R1  R2  RX
  GPR174 MUTATED     3   0   0   0
  GPR174 WILD-TYPE 102   5   4  10
D103V11, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  R0              3              102
  R1              0                5
  R2              0                4
  RX              0               10
D103V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GPR174 MUTATED          0        4         1         0          1          0
  GPR174 WILD-TYPE       37       48         9        24         32          6
                  vv
clus               STAGE IV
  GPR174 MUTATED          0
  GPR174 WILD-TYPE        9
D103V13, multiclass

Clustering(104) Variable = HOXA5 MUTATION ANALYSIS
D104V1, survival
                 sevent
clus2              0  1
  HOXA5 MUTATED    5  1
  HOXA5 WILD-TYPE 98 49
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             147 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              1              49 
$`HOXA5 MUTATED`
TCGA-38-4625 TCGA-38-4629 TCGA-44-6144 TCGA-55-5899 TCGA-55-6642 TCGA-64-1676 
       97.74        28.37         0.30         2.86        32.61        56.81 

$`HOXA5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68       120.79        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  HOXA5 MUTATED HOXA5 WILD-TYPE 
           0.30            0.07 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
          97.74          120.79 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
          30.49           14.07 
[1] "0.3 - 97.7 (30.5)"  "0.1 - 120.8 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6836 
"HOXA5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6836 
"HOXA5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6836 
"HOXA5 WILD-TYPE" 
[1] "hr=" "4.3"
D104V2, continuous
D104V3, binary
                 cls
clus               0  1
  HOXA5 MUTATED    1  5
  HOXA5 WILD-TYPE 92 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA5 MUTATED      1    5
  HOXA5 WILD-TYPE   92   74
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  FEMALE             1              92
  MALE               5              74
D104V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HOXA5 MUTATED                            0                                 0
  HOXA5 WILD-TYPE                          2                                39
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HOXA5 MUTATED                                                    6
  HOXA5 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HOXA5 MUTATED                                            0
  HOXA5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HOXA5 MUTATED                                               0
  HOXA5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  HOXA5 MUTATED                                0
  HOXA5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  HOXA5 MUTATED                                    0
  HOXA5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HOXA5 MUTATED                              0                             0
  HOXA5 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HOXA5 MUTATED                                               0
  HOXA5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  HOXA5 MUTATED                              0
  HOXA5 WILD-TYPE                            2
D104V5, multiclass
D104V6, binary
                 cls
clus                0   1
  HOXA5 MUTATED     0   6
  HOXA5 WILD-TYPE  12 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA5 MUTATED      0    6
  HOXA5 WILD-TYPE   12  154
     clus
vv    HOXA5 MUTATED HOXA5 WILD-TYPE
  NO              0              12
  YES             6             154
D104V7, continuous
D104V8, continuous
                 vv
clus               M0  M1  MX
  HOXA5 MUTATED     5   0   1
  HOXA5 WILD-TYPE 133   9  22
D104V9, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  HOXA5 MUTATED    5  1  0  0  0
  HOXA5 WILD-TYPE 90 36 34  1  4
D104V10, multiclass
                 vv
clus               R0  R1  R2  RX
  HOXA5 MUTATED     5   0   0   1
  HOXA5 WILD-TYPE 100   5   4   9
D104V11, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  R0             5             100
  R1             0               5
  R2             0               4
  RX             1               9
D104V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HOXA5 MUTATED          3        2         0         1          0          0
  HOXA5 WILD-TYPE       34       50        10        23         33          6
                 vv
clus              STAGE IV
  HOXA5 MUTATED          0
  HOXA5 WILD-TYPE        9
D104V13, multiclass

Clustering(105) Variable = SH2D2A MUTATION ANALYSIS
D105V1, survival
                  sevent
clus2               0  1
  SH2D2A MUTATED    4  1
  SH2D2A WILD-TYPE 99 49
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               5              148 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               1               49 
$`SH2D2A MUTATED`
TCGA-05-4396 TCGA-35-3615 TCGA-44-6147 TCGA-50-5051 TCGA-67-3771 
        9.96         0.46         7.76        14.96        20.02 

$`SH2D2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
        1.02         4.96         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SH2D2A MUTATED SH2D2A WILD-TYPE 
            0.46             0.07 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
           20.02           120.79 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
           9.960           14.975 
[1] "0.5 - 20.0 (10.0)"  "0.1 - 120.8 (15.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6836 
"SH2D2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6836 
"SH2D2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6836 
"SH2D2A WILD-TYPE" 
[1] "hr=" "1.7"
D105V2, continuous
D105V3, binary
                  cls
clus                0  1
  SH2D2A MUTATED    4  2
  SH2D2A WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH2D2A MUTATED      4    2
  SH2D2A WILD-TYPE   89   77
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D105V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SH2D2A MUTATED                            0                                 1
  SH2D2A WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SH2D2A MUTATED                                                    4
  SH2D2A WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SH2D2A MUTATED                                            0
  SH2D2A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SH2D2A MUTATED                                               0
  SH2D2A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  SH2D2A MUTATED                                0
  SH2D2A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  SH2D2A MUTATED                                    0
  SH2D2A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SH2D2A MUTATED                              0                             1
  SH2D2A WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SH2D2A MUTATED                                               0
  SH2D2A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  SH2D2A MUTATED                              0
  SH2D2A WILD-TYPE                            2
D105V5, multiclass
D105V6, binary
                  cls
clus                 0   1
  SH2D2A MUTATED     0   6
  SH2D2A WILD-TYPE  12 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH2D2A MUTATED      0    6
  SH2D2A WILD-TYPE   12  154
     clus
vv    SH2D2A MUTATED SH2D2A WILD-TYPE
  NO               0               12
  YES              6              154
D105V7, continuous
D105V8, continuous
[1] "Remove cluster labels:" "SH2D2A MUTATED"        
clus
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
                  vv
clus                M0  M1  MX
  SH2D2A MUTATED     6   0   0
  SH2D2A WILD-TYPE 132   9  23
D105V9, multiclass
    clus
vv   SH2D2A MUTATED SH2D2A WILD-TYPE
  M0              6              132
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  SH2D2A MUTATED    2  1  2  0  1
  SH2D2A WILD-TYPE 93 36 32  1  3
D105V10, multiclass
                  vv
clus                R0  R1  R2  RX
  SH2D2A MUTATED     4   0   1   0
  SH2D2A WILD-TYPE 101   5   3  10
D105V11, multiclass
    clus
vv   SH2D2A MUTATED SH2D2A WILD-TYPE
  R0              4              101
  R1              0                5
  R2              1                3
  RX              0               10
D105V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SH2D2A MUTATED          2        1         0         0          2          1
  SH2D2A WILD-TYPE       35       51        10        24         31          5
                  vv
clus               STAGE IV
  SH2D2A MUTATED          0
  SH2D2A WILD-TYPE        9
D105V13, multiclass

Clustering(106) Variable = ABCB5 MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  ABCB5 MUTATED   11  7
  ABCB5 WILD-TYPE 92 43
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             18             135 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
              7              43 
$`ABCB5 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-38-4629 
        3.98        19.92         9.96        47.05        30.02        28.37 
TCGA-38-4632 TCGA-44-6145 TCGA-49-4494 TCGA-50-5049 TCGA-55-1596 TCGA-64-1678 
       44.61         3.35        35.54        48.82        45.17        39.09 
TCGA-64-5778 TCGA-64-5781 TCGA-73-4658 TCGA-73-4670 TCGA-91-6829 TCGA-91-6836 
       30.44        39.52        52.57         0.46        41.33         0.36 

$`ABCB5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       12.00        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
      120.79        37.71        49.02        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
       12.66         5.29         4.60        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.22         1.28         1.15 

  ABCB5 MUTATED ABCB5 WILD-TYPE 
           0.36            0.07 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
          52.57          120.79 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
          32.99           13.87 
[1] "0.4 - 52.6 (33.0)"  "0.1 - 120.8 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-91-6836 
  "ABCB5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-91-6836 
  "ABCB5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-91-6836 
  "ABCB5 MUTATED" 
[1] "hr=" "1.3"
D106V2, continuous
D106V3, binary
                 cls
clus               0  1
  ABCB5 MUTATED    8 11
  ABCB5 WILD-TYPE 85 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCB5 MUTATED      8   11
  ABCB5 WILD-TYPE   85   68
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  FEMALE             8              85
  MALE              11              68
D106V4, continuous
[1] "Remove cluster labels:" "ABCB5 MUTATED"         
clus
  ABCB5 MUTATED ABCB5 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ABCB5 MUTATED                            0                                 6
  ABCB5 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ABCB5 MUTATED                                                   11
  ABCB5 WILD-TYPE                                                103
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ABCB5 MUTATED                                            0
  ABCB5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ABCB5 MUTATED                                               2
  ABCB5 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ABCB5 MUTATED                                0
  ABCB5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ABCB5 MUTATED                                    0
  ABCB5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ABCB5 MUTATED                              0                             0
  ABCB5 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ABCB5 MUTATED                                               0
  ABCB5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ABCB5 MUTATED                              0
  ABCB5 WILD-TYPE                            2
D106V5, multiclass
D106V6, binary
                 cls
clus                0   1
  ABCB5 MUTATED     0  19
  ABCB5 WILD-TYPE  12 141
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCB5 MUTATED      0   19
  ABCB5 WILD-TYPE   12  141
     clus
vv    ABCB5 MUTATED ABCB5 WILD-TYPE
  NO              0              12
  YES            19             141
D106V7, continuous
D106V8, continuous
                 vv
clus               M0  M1  MX
  ABCB5 MUTATED    15   2   2
  ABCB5 WILD-TYPE 123   7  21
D106V9, multiclass
    clus
vv   ABCB5 MUTATED ABCB5 WILD-TYPE
  M0            15             123
  M1             2               7
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  ABCB5 MUTATED   13  4  1  1  0
  ABCB5 WILD-TYPE 82 33 33  0  4
D106V10, multiclass
                 vv
clus              R0 R1 R2 RX
  ABCB5 MUTATED   12  1  1  1
  ABCB5 WILD-TYPE 93  4  3  9
D106V11, multiclass
    clus
vv   ABCB5 MUTATED ABCB5 WILD-TYPE
  R0            12              93
  R1             1               4
  R2             1               3
  RX             1               9
D106V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ABCB5 MUTATED          2        7         1         3          2          2
  ABCB5 WILD-TYPE       35       45         9        21         31          4
                 vv
clus              STAGE IV
  ABCB5 MUTATED          2
  ABCB5 WILD-TYPE        7
D106V13, multiclass

Clustering(107) Variable = ANKRD56 MUTATION ANALYSIS
D107V1, survival
                   sevent
clus2                0  1
  ANKRD56 MUTATED    8  2
  ANKRD56 WILD-TYPE 95 48
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               10               143 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
                2                48 
$`ANKRD56 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-5420 TCGA-05-5423 TCGA-38-4631 
       19.92         9.96        47.05         1.02         4.96        11.64 
TCGA-55-1595 TCGA-55-6642 TCGA-64-5779 TCGA-64-5781 
       48.62        32.61        16.67        39.52 

$`ANKRD56 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 
       25.02        25.02        24.00        15.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         2.86         0.07         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 
       39.09        37.02        83.84         0.10        30.44         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
             1.02              0.07 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
            48.62            120.79 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
           18.295            14.070 
[1] "1.0 - 48.6 (18.3)"  "0.1 - 120.8 (14.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
[1] "hr=" "1.9"
D107V2, continuous
D107V3, binary
                   cls
clus                 0  1
  ANKRD56 MUTATED    5  6
  ANKRD56 WILD-TYPE 88 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      5    6
  ANKRD56 WILD-TYPE   88   73
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  FEMALE               5                88
  MALE                 6                73
D107V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ANKRD56 MUTATED                            1
  ANKRD56 WILD-TYPE                          1
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANKRD56 MUTATED                                   5
  ANKRD56 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANKRD56 MUTATED                                                    3
  ANKRD56 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANKRD56 MUTATED                                            0
  ANKRD56 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANKRD56 MUTATED                                               0
  ANKRD56 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ANKRD56 MUTATED                                1
  ANKRD56 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ANKRD56 MUTATED                                    0
  ANKRD56 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANKRD56 MUTATED                              0                             1
  ANKRD56 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANKRD56 MUTATED                                               0
  ANKRD56 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ANKRD56 MUTATED                              0
  ANKRD56 WILD-TYPE                            2
D107V5, multiclass
D107V6, binary
                   cls
clus                  0   1
  ANKRD56 MUTATED     1  10
  ANKRD56 WILD-TYPE  11 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      1   10
  ANKRD56 WILD-TYPE   11  150
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  NO                1                11
  YES              10               150
D107V7, continuous
D107V8, continuous
                   vv
clus                 M0  M1  MX
  ANKRD56 MUTATED    10   0   1
  ANKRD56 WILD-TYPE 128   9  22
D107V9, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  M0              10               128
  M1               0                 9
  MX               1                22
                   vv
clus                N0 N1 N2 N3 NX
  ANKRD56 MUTATED    5  2  3  1  0
  ANKRD56 WILD-TYPE 90 35 31  0  4
D107V10, multiclass
                   vv
clus                R0 R1 R2 RX
  ANKRD56 MUTATED    9  0  1  0
  ANKRD56 WILD-TYPE 96  5  3 10
D107V11, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  R0               9                96
  R1               0                 5
  R2               1                 3
  RX               0                10
D107V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ANKRD56 MUTATED          1        4         0         1          3          2
  ANKRD56 WILD-TYPE       36       48        10        23         30          4
                   vv
clus                STAGE IV
  ANKRD56 MUTATED          0
  ANKRD56 WILD-TYPE        9
D107V13, multiclass

Clustering(108) Variable = GTF2I MUTATION ANALYSIS
D108V1, survival
                 sevent
clus2               0   1
  GTF2I MUTATED     1   1
  GTF2I WILD-TYPE 102  49
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             151 
  GTF2I MUTATED GTF2I WILD-TYPE 
              1              49 
$`GTF2I MUTATED`
TCGA-05-4396 TCGA-44-2662 
        9.96        15.78 

$`GTF2I WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
       18.87        19.10        13.15        17.39         3.39        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GTF2I MUTATED GTF2I WILD-TYPE 
           9.96            0.07 
  GTF2I MUTATED GTF2I WILD-TYPE 
          15.78          120.79 
  GTF2I MUTATED GTF2I WILD-TYPE 
          12.87           14.93 
[1] "10.0 - 15.8 (12.9)" "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             151 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4397      TCGA-05-4398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4403      TCGA-05-4405      TCGA-05-4415 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4417      TCGA-05-4418      TCGA-05-4420      TCGA-05-4422 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4425      TCGA-05-4426      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5429 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-5643 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6543 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3774      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D108V2, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             153 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-4434      TCGA-05-5420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-5643 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-6642      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3774      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-86-6562 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
D108V3, binary
                 cls
clus               0  1
  GTF2I MUTATED    1  2
  GTF2I WILD-TYPE 92 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      1    2
  GTF2I WILD-TYPE   92   77
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  FEMALE             1              92
  MALE               2              77
D108V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GTF2I MUTATED                            0                                 1
  GTF2I WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GTF2I MUTATED                                                    1
  GTF2I WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GTF2I MUTATED                                            0
  GTF2I WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GTF2I MUTATED                                               0
  GTF2I WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  GTF2I MUTATED                                0
  GTF2I WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  GTF2I MUTATED                                    1
  GTF2I WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GTF2I MUTATED                              0                             0
  GTF2I WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GTF2I MUTATED                                               0
  GTF2I WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  GTF2I MUTATED                              0
  GTF2I WILD-TYPE                            2
D108V5, multiclass
D108V6, binary
                 cls
clus                0   1
  GTF2I MUTATED     0   3
  GTF2I WILD-TYPE  12 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      0    3
  GTF2I WILD-TYPE   12  157
     clus
vv    GTF2I MUTATED GTF2I WILD-TYPE
  NO              0              12
  YES             3             157
D108V7, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             110 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4405      TCGA-05-4410      TCGA-05-4415 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4417      TCGA-05-4418      TCGA-05-4420      TCGA-05-4422 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4425      TCGA-05-4426      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5428 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4629      TCGA-38-4631      TCGA-38-4632 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4494      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4514      TCGA-49-6742 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5931      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-6590      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6543      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-75-5122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-6203      TCGA-75-6206 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-80-5611      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D108V8, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2666      TCGA-44-2668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
                 vv
clus               M0  M1  MX
  GTF2I MUTATED     3   0   0
  GTF2I WILD-TYPE 135   9  23
D108V9, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  M0             3             135
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  GTF2I MUTATED    1  2  0  0  0
  GTF2I WILD-TYPE 94 35 34  1  4
D108V10, multiclass
                 vv
clus               R0  R1  R2  RX
  GTF2I MUTATED     3   0   0   0
  GTF2I WILD-TYPE 102   5   4  10
D108V11, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  R0             3             102
  R1             0               5
  R2             0               4
  RX             0              10
D108V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GTF2I MUTATED          0        1         1         0          0          1
  GTF2I WILD-TYPE       37       51         9        24         33          5
                 vv
clus              STAGE IV
  GTF2I MUTATED          0
  GTF2I WILD-TYPE        9
D108V13, multiclass

Clustering(109) Variable = MUC16 MUTATION ANALYSIS
D109V1, survival
                 sevent
clus2              0  1
  MUC16 MUTATED   48 23
  MUC16 WILD-TYPE 55 27
  MUC16 MUTATED MUC16 WILD-TYPE 
             71              82 
  MUC16 MUTATED MUC16 WILD-TYPE 
             23              27 
$`MUC16 MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
       30.02        26.01        25.02         5.95        97.74       120.79 
TCGA-38-4631 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2666 
       11.64        18.87        19.10        17.39        15.78         3.19 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 
        8.09         8.32         6.44         4.60         3.48         0.30 
TCGA-44-6145 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-49-4487 
        3.35         5.42         2.70        63.72        32.45        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4507 TCGA-49-4514 TCGA-49-6743 TCGA-49-6745 
       28.57        35.54         8.81        43.20        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5931 TCGA-50-5932 TCGA-50-6590 TCGA-50-6593 
       20.48        71.47         8.78        35.87        42.31        11.05 
TCGA-50-6594 TCGA-55-1595 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       12.16        48.62         0.79        56.81        20.65        39.09 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67        39.52         0.99        20.02 
TCGA-67-6216 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        4.60        52.57        29.95        15.35         0.46         1.32 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

$`MUC16 WILD-TYPE`
TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4415 TCGA-05-4422 TCGA-05-4425 
       14.01        45.01        37.02         2.96        12.00        21.99 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-3396 TCGA-44-3919 TCGA-44-5645 
       13.15         3.39        13.15        10.22         6.21         6.84 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        9.93         7.76         3.12        36.49        16.41        76.21 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       12.66        46.72        14.07        32.84        29.46        29.75 
TCGA-49-6742 TCGA-49-6744 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       15.02        12.99        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         9.27        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       25.51         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1680 TCGA-64-5774 TCGA-64-5815 
        2.86         0.07        32.61        37.02        83.84         7.33 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-71-6725 
       18.84        14.04        12.66         5.29        13.87         2.01 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4676 TCGA-73-4677 
       23.38        20.28         4.01         1.25 

  MUC16 MUTATED MUC16 WILD-TYPE 
           0.10            0.07 
  MUC16 MUTATED MUC16 WILD-TYPE 
         120.79           83.84 
  MUC16 MUTATED MUC16 WILD-TYPE 
          16.67           13.94 
[1] "0.1 - 120.8 (16.7)" "0.1 - 83.8 (13.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-91-6836 
  "MUC16 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-91-6836 
  "MUC16 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-91-6836 
  "MUC16 MUTATED" 
[1] "hr=" "1.1"
D109V2, continuous
D109V3, binary
                 cls
clus               0  1
  MUC16 MUTATED   46 33
  MUC16 WILD-TYPE 47 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC16 MUTATED     46   33
  MUC16 WILD-TYPE   47   46
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  FEMALE            46              47
  MALE              33              46
D109V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MUC16 MUTATED                            1                                18
  MUC16 WILD-TYPE                          1                                21
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MUC16 MUTATED                                                   52
  MUC16 WILD-TYPE                                                 62
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MUC16 MUTATED                                            0
  MUC16 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MUC16 MUTATED                                               2
  MUC16 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MUC16 MUTATED                                2
  MUC16 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MUC16 MUTATED                                    1
  MUC16 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MUC16 MUTATED                              0                             3
  MUC16 WILD-TYPE                            2                             2
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MUC16 MUTATED                                               0
  MUC16 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  MUC16 MUTATED                              0
  MUC16 WILD-TYPE                            2
D109V5, multiclass
D109V6, binary
                 cls
clus               0  1
  MUC16 MUTATED    5 74
  MUC16 WILD-TYPE  7 86
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC16 MUTATED      5   74
  MUC16 WILD-TYPE    7   86
     clus
vv    MUC16 MUTATED MUC16 WILD-TYPE
  NO              5               7
  YES            74              86
D109V7, continuous
D109V8, continuous
                 vv
clus              M0 M1 MX
  MUC16 MUTATED   64  3 12
  MUC16 WILD-TYPE 74  6 11
D109V9, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  M0            64              74
  M1             3               6
  MX            12              11
                 vv
clus              N0 N1 N2 N3 NX
  MUC16 MUTATED   49 14 13  1  2
  MUC16 WILD-TYPE 46 23 21  0  2
D109V10, multiclass
                 vv
clus              R0 R1 R2 RX
  MUC16 MUTATED   48  1  3  6
  MUC16 WILD-TYPE 57  4  1  4
D109V11, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  R0            48              57
  R1             1               4
  R2             3               1
  RX             6               4
D109V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MUC16 MUTATED         19       27         4         7         15          4
  MUC16 WILD-TYPE       18       25         6        17         18          2
                 vv
clus              STAGE IV
  MUC16 MUTATED          3
  MUC16 WILD-TYPE        6
D109V13, multiclass

Clustering(110) Variable = VPS13C MUTATION ANALYSIS
D110V1, survival
                  sevent
clus2               0  1
  VPS13C MUTATED   13  4
  VPS13C WILD-TYPE 90 46
  VPS13C MUTATED VPS13C WILD-TYPE 
              17              136 
  VPS13C MUTATED VPS13C WILD-TYPE 
               4               46 
$`VPS13C MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4427 
       19.92        37.02         9.96        24.03        19.00        26.01 
TCGA-35-4123 TCGA-44-2656 TCGA-44-6775 TCGA-49-6743 TCGA-50-5066 TCGA-55-1592 
        5.95        19.10         2.70        12.13         9.76        23.05 
TCGA-55-1594 TCGA-64-1676 TCGA-67-3771 TCGA-67-6217 TCGA-73-4677 
       38.73        56.81        20.02        13.87         1.25 

$`VPS13C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        45.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       20.05         2.96        14.93         8.98        29.95        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1595 
       25.51        11.05        12.16         6.21        33.37        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        5.29         4.60         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  VPS13C MUTATED VPS13C WILD-TYPE 
            1.25             0.07 
  VPS13C MUTATED VPS13C WILD-TYPE 
           56.81           120.79 
  VPS13C MUTATED VPS13C WILD-TYPE 
          19.100           14.055 
[1] "1.2 - 56.8 (19.1)"  "0.1 - 120.8 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED"   "VPS13C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "VPS13C MUTATED"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-91-6836 
"VPS13C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED"   "VPS13C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "VPS13C MUTATED"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-91-6836 
"VPS13C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED"   "VPS13C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "VPS13C MUTATED"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-91-6836 
"VPS13C WILD-TYPE" 
[1] "hr=" "1.3"
D110V2, continuous
D110V3, binary
                  cls
clus                0  1
  VPS13C MUTATED    7 12
  VPS13C WILD-TYPE 86 67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  VPS13C MUTATED      7   12
  VPS13C WILD-TYPE   86   67
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  FEMALE              7               86
  MALE               12               67
D110V4, continuous
[1] "Remove cluster labels:" "VPS13C MUTATED"        
clus
  VPS13C MUTATED VPS13C WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  VPS13C MUTATED                            0                                 8
  VPS13C WILD-TYPE                          2                                31
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  VPS13C MUTATED                                                    9
  VPS13C WILD-TYPE                                                105
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  VPS13C MUTATED                                            0
  VPS13C WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  VPS13C MUTATED                                               0
  VPS13C WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  VPS13C MUTATED                                1
  VPS13C WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  VPS13C MUTATED                                    0
  VPS13C WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  VPS13C MUTATED                              0                             1
  VPS13C WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  VPS13C MUTATED                                               0
  VPS13C WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  VPS13C MUTATED                              0
  VPS13C WILD-TYPE                            2
D110V5, multiclass
D110V6, binary
                  cls
clus                 0   1
  VPS13C MUTATED     0  19
  VPS13C WILD-TYPE  12 141
[1] "tbl2"
                  cls
clus               [,1] [,2]
  VPS13C MUTATED      0   19
  VPS13C WILD-TYPE   12  141
     clus
vv    VPS13C MUTATED VPS13C WILD-TYPE
  NO               0               12
  YES             19              141
D110V7, continuous
D110V8, continuous
                  vv
clus                M0  M1  MX
  VPS13C MUTATED    17   0   2
  VPS13C WILD-TYPE 121   9  21
D110V9, multiclass
    clus
vv   VPS13C MUTATED VPS13C WILD-TYPE
  M0             17              121
  M1              0                9
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  VPS13C MUTATED   12  4  3  0  0
  VPS13C WILD-TYPE 83 33 31  1  4
D110V10, multiclass
                  vv
clus               R0 R1 R2 RX
  VPS13C MUTATED   14  0  1  2
  VPS13C WILD-TYPE 91  5  3  8
D110V11, multiclass
    clus
vv   VPS13C MUTATED VPS13C WILD-TYPE
  R0             14               91
  R1              0                5
  R2              1                3
  RX              2                8
D110V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  VPS13C MUTATED          5        7         0         3          3          1
  VPS13C WILD-TYPE       32       45        10        21         30          5
                  vv
clus               STAGE IV
  VPS13C MUTATED          0
  VPS13C WILD-TYPE        9
D110V13, multiclass

Clustering(111) Variable = OR2T27 MUTATION ANALYSIS
D111V1, survival
                  sevent
clus2               0  1
  OR2T27 MUTATED    5  2
  OR2T27 WILD-TYPE 98 48
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               7              146 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               48 
$`OR2T27 MUTATED`
TCGA-35-5375 TCGA-44-2659 TCGA-44-6778 TCGA-50-6590 TCGA-64-5781 TCGA-67-3771 
        8.68        17.39        36.49        42.31        39.52        20.02 
TCGA-73-4658 
       52.57 

$`OR2T27 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2T27 MUTATED OR2T27 WILD-TYPE 
            8.68             0.07 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           52.57           120.79 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
          36.490           14.025 
[1] "8.7 - 52.6 (36.5)"  "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
[1] "hr=" "1.9"
D111V2, continuous
D111V3, binary
                  cls
clus                0  1
  OR2T27 MUTATED    5  3
  OR2T27 WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      5    3
  OR2T27 WILD-TYPE   88   76
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D111V4, continuous
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2T27 MUTATED                            0                                 1
  OR2T27 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T27 MUTATED                                                    7
  OR2T27 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2T27 MUTATED                                            0
  OR2T27 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2T27 MUTATED                                               0
  OR2T27 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR2T27 MUTATED                                0
  OR2T27 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2T27 MUTATED                                    0
  OR2T27 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2T27 MUTATED                              0                             0
  OR2T27 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2T27 MUTATED                                               0
  OR2T27 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR2T27 MUTATED                              0
  OR2T27 WILD-TYPE                            2
D111V5, multiclass
D111V6, binary
                  cls
clus                 0   1
  OR2T27 MUTATED     0   8
  OR2T27 WILD-TYPE  12 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      0    8
  OR2T27 WILD-TYPE   12  152
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  NO               0               12
  YES              8              152
D111V7, continuous
D111V8, continuous
                  vv
clus                M0  M1  MX
  OR2T27 MUTATED     7   0   1
  OR2T27 WILD-TYPE 131   9  22
D111V9, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  M0              7              131
  M1              0                9
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  OR2T27 MUTATED    6  1  1  0  0
  OR2T27 WILD-TYPE 89 36 33  1  4
D111V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR2T27 MUTATED    6  0  0  0
  OR2T27 WILD-TYPE 99  5  4 10
D111V11, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  R0              6               99
  R1              0                5
  R2              0                4
  RX              0               10
D111V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2T27 MUTATED          2        4         0         1          1          0
  OR2T27 WILD-TYPE       35       48        10        23         32          6
                  vv
clus               STAGE IV
  OR2T27 MUTATED          0
  OR2T27 WILD-TYPE        9
D111V13, multiclass

Clustering(112) Variable = FERD3L MUTATION ANALYSIS
D112V1, survival
                  sevent
clus2               0  1
  FERD3L MUTATED    5  2
  FERD3L WILD-TYPE 98 48
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              146 
  FERD3L MUTATED FERD3L WILD-TYPE 
               2               48 
$`FERD3L MUTATED`
TCGA-05-4424 TCGA-38-4626 TCGA-44-5645 TCGA-50-5045 TCGA-50-5933 TCGA-64-1676 
       30.02       120.79         6.84        71.47        77.88        56.81 
TCGA-64-5781 
       39.52 

$`FERD3L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  FERD3L MUTATED FERD3L WILD-TYPE 
            6.84             0.07 
  FERD3L MUTATED FERD3L WILD-TYPE 
          120.79            97.74 
  FERD3L MUTATED FERD3L WILD-TYPE 
          56.810           14.025 
[1] "6.8 - 120.8 (56.8)" "0.1 - 97.7 (14.0)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
[1] "hr=" "4.6"
D112V2, continuous
D112V3, binary
                  cls
clus                0  1
  FERD3L MUTATED    4  3
  FERD3L WILD-TYPE 89 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      4    3
  FERD3L WILD-TYPE   89   76
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D112V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FERD3L MUTATED                            0                                 2
  FERD3L WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FERD3L MUTATED                                                    5
  FERD3L WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FERD3L MUTATED                                            0
  FERD3L WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FERD3L MUTATED                                               0
  FERD3L WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FERD3L MUTATED                                0
  FERD3L WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FERD3L MUTATED                                    0
  FERD3L WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FERD3L MUTATED                              0                             0
  FERD3L WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FERD3L MUTATED                                               0
  FERD3L WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  FERD3L MUTATED                              0
  FERD3L WILD-TYPE                            2
D112V5, multiclass
D112V6, binary
                  cls
clus                 0   1
  FERD3L MUTATED     1   6
  FERD3L WILD-TYPE  11 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      1    6
  FERD3L WILD-TYPE   11  154
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  NO               1               11
  YES              6              154
D112V7, continuous
D112V8, continuous
                  vv
clus                M0  M1  MX
  FERD3L MUTATED     6   0   0
  FERD3L WILD-TYPE 132   9  23
D112V9, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  M0              6              132
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  FERD3L MUTATED    4  1  1  0  0
  FERD3L WILD-TYPE 91 36 33  1  4
D112V10, multiclass
                  vv
clus                R0  R1  R2  RX
  FERD3L MUTATED     3   1   0   0
  FERD3L WILD-TYPE 102   4   4  10
D112V11, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  R0              3              102
  R1              1                4
  R2              0                4
  RX              0               10
D112V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FERD3L MUTATED          3        1         1         1          0          1
  FERD3L WILD-TYPE       34       51         9        23         33          5
                  vv
clus               STAGE IV
  FERD3L MUTATED          0
  FERD3L WILD-TYPE        9
D112V13, multiclass

Clustering(113) Variable = OR4C16 MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED   10  4
  OR4C16 WILD-TYPE 93 46
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              139 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               4               46 
$`OR4C16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-4112 TCGA-49-4487 TCGA-49-6743 TCGA-50-5049 
       19.92         9.96         4.60        28.11        12.13        48.82 
TCGA-50-5066 TCGA-50-5941 TCGA-50-6592 TCGA-50-6594 TCGA-55-1595 TCGA-64-5781 
        9.76         9.37        25.51        12.16        48.62        39.52 
TCGA-71-6725 TCGA-91-6831 
        2.01         1.28 

$`OR4C16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       15.02        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       11.47        42.31         3.88        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        1.32         4.01         1.25         1.22        41.33         1.15 
TCGA-91-6836 
        0.36 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            1.28             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           48.82           120.79 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
          12.145           14.960 
[1] "1.3 - 48.8 (12.1)"  "0.1 - 120.8 (15.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
[1] "hr=" "1"  
D113V2, continuous
D113V3, binary
                  cls
clus                0  1
  OR4C16 MUTATED    9  5
  OR4C16 WILD-TYPE 84 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      9    5
  OR4C16 WILD-TYPE   84   74
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              9               84
  MALE                5               74
D113V4, continuous
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5778       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4C16 MUTATED                            0                                 4
  OR4C16 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4C16 MUTATED                                                    7
  OR4C16 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4C16 MUTATED                                            0
  OR4C16 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4C16 MUTATED                                               0
  OR4C16 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4C16 MUTATED                                2
  OR4C16 WILD-TYPE                              0
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4C16 MUTATED                                    0
  OR4C16 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4C16 MUTATED                              0                             1
  OR4C16 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4C16 MUTATED                                               0
  OR4C16 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR4C16 MUTATED                              0
  OR4C16 WILD-TYPE                            2
D113V5, multiclass
D113V6, binary
                  cls
clus                 0   1
  OR4C16 MUTATED     0  14
  OR4C16 WILD-TYPE  12 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      0   14
  OR4C16 WILD-TYPE   12  146
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               0               12
  YES             14              146
D113V7, continuous
D113V8, continuous
                  vv
clus                M0  M1  MX
  OR4C16 MUTATED    12   0   2
  OR4C16 WILD-TYPE 126   9  21
D113V9, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0             12              126
  M1              0                9
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  OR4C16 MUTATED   10  1  3  0  0
  OR4C16 WILD-TYPE 85 36 31  1  4
D113V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR4C16 MUTATED    6  0  0  1
  OR4C16 WILD-TYPE 99  5  4  9
D113V11, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  R0              6               99
  R1              0                5
  R2              0                4
  RX              1                9
D113V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR4C16 MUTATED          4        6         0         0          3          1
  OR4C16 WILD-TYPE       33       46        10        24         30          5
                  vv
clus               STAGE IV
  OR4C16 MUTATED          0
  OR4C16 WILD-TYPE        9
D113V13, multiclass

Clustering(114) Variable = C1ORF173 MUTATION ANALYSIS
D114V1, survival
                    sevent
clus2                 0  1
  C1ORF173 MUTATED   13  9
  C1ORF173 WILD-TYPE 90 41
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                22                131 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                 9                 41 
$`C1ORF173 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4418 TCGA-05-4427 TCGA-05-4432 
       37.02         9.96        47.05         8.98        26.01        25.02 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4632 TCGA-44-2656 TCGA-44-2668 TCGA-44-3396 
        5.95         8.68        44.61        19.10         8.09        10.22 
TCGA-44-6776 TCGA-49-4501 TCGA-49-4506 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 
       63.72        46.72        32.84        77.88        42.31        11.05 
TCGA-64-5775 TCGA-64-5781 TCGA-67-3773 TCGA-91-6831 
        0.10        39.52        14.04         1.28 

$`C1ORF173 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
        8.02        19.00        20.05         2.96        14.93        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 
       12.00        30.02        21.99        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        11.64         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3398 
       17.39         3.39        15.78        13.15         3.19         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       12.66        35.54        14.07         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       16.67         7.33         0.99        20.02        18.84        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
              0.10               0.07 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
             77.88             120.79 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
             22.06              14.07 
[1] "0.1 - 77.9 (22.1)"  "0.1 - 120.8 (14.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "C1ORF173 MUTATED"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "C1ORF173 MUTATED"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "C1ORF173 MUTATED"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
[1] "hr=" "1.1"
D114V2, continuous
D114V3, binary
                    cls
clus                  0  1
  C1ORF173 MUTATED   11 14
  C1ORF173 WILD-TYPE 82 65
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED     11   14
  C1ORF173 WILD-TYPE   82   65
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  FEMALE               11                 82
  MALE                 14                 65
D114V4, continuous
[1] "Remove cluster labels:" "C1ORF173 MUTATED"      
clus
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                 2                 10 
        TCGA-35-4122         TCGA-64-1677         TCGA-64-5778 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4662 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4676 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-75-5122 
"C1ORF173 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  C1ORF173 MUTATED                            0
  C1ORF173 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  C1ORF173 MUTATED                                   9
  C1ORF173 WILD-TYPE                                30
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C1ORF173 MUTATED                                                   16
  C1ORF173 WILD-TYPE                                                 98
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C1ORF173 MUTATED                                            0
  C1ORF173 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C1ORF173 MUTATED                                               0
  C1ORF173 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  C1ORF173 MUTATED                                0
  C1ORF173 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  C1ORF173 MUTATED                                    0
  C1ORF173 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C1ORF173 MUTATED                              0                             0
  C1ORF173 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C1ORF173 MUTATED                                               0
  C1ORF173 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  C1ORF173 MUTATED                              0
  C1ORF173 WILD-TYPE                            2
D114V5, multiclass
D114V6, binary
                    cls
clus                   0   1
  C1ORF173 MUTATED     0  25
  C1ORF173 WILD-TYPE  12 135
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED      0   25
  C1ORF173 WILD-TYPE   12  135
     clus
vv    C1ORF173 MUTATED C1ORF173 WILD-TYPE
  NO                 0                 12
  YES               25                135
D114V7, continuous
D114V8, continuous
                    vv
clus                  M0  M1  MX
  C1ORF173 MUTATED    22   1   2
  C1ORF173 WILD-TYPE 116   8  21
D114V9, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  M0               22                116
  M1                1                  8
  MX                2                 21
                    vv
clus                 N0 N1 N2 N3 NX
  C1ORF173 MUTATED   14  5  5  1  0
  C1ORF173 WILD-TYPE 81 32 29  0  4
D114V10, multiclass
                    vv
clus                 R0 R1 R2 RX
  C1ORF173 MUTATED   17  1  0  1
  C1ORF173 WILD-TYPE 88  4  4  9
D114V11, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  R0               17                 88
  R1                1                  4
  R2                0                  4
  RX                1                  9
D114V12, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  C1ORF173 MUTATED          2       11         0         3          5
  C1ORF173 WILD-TYPE       35       41        10        21         28
                    vv
clus                 STAGE IIIB STAGE IV
  C1ORF173 MUTATED            3        1
  C1ORF173 WILD-TYPE          3        8
D114V13, multiclass

Clustering(115) Variable = HCK MUTATION ANALYSIS
D115V1, survival
               sevent
clus2            0  1
  HCK MUTATED    6  0
  HCK WILD-TYPE 97 50
  HCK MUTATED HCK WILD-TYPE 
            6           147 
  HCK MUTATED HCK WILD-TYPE 
            0            50 
$`HCK MUTATED`
TCGA-05-4398 TCGA-44-6144 TCGA-50-5941 TCGA-55-5899 TCGA-67-3771 TCGA-67-3772 
       47.05         0.30         9.37         2.86        20.02        18.84 

$`HCK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.99        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  HCK MUTATED HCK WILD-TYPE 
         0.30          0.07 
  HCK MUTATED HCK WILD-TYPE 
        47.05        120.79 
  HCK MUTATED HCK WILD-TYPE 
       14.105        14.930 
[1] "0.3 - 47.0 (14.1)"  "0.1 - 120.8 (14.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"HCK WILD-TYPE"   "HCK MUTATED"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"HCK WILD-TYPE"   "HCK MUTATED"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"HCK WILD-TYPE"   "HCK MUTATED"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
[1] "hr="     "2.6e+07"
D115V2, continuous
D115V3, binary
               cls
clus             0  1
  HCK MUTATED    4  2
  HCK WILD-TYPE 89 77
[1] "tbl2"
               cls
clus            [,1] [,2]
  HCK MUTATED      4    2
  HCK WILD-TYPE   89   77
        clus
vv       HCK MUTATED HCK WILD-TYPE
  FEMALE           4            89
  MALE             2            77
D115V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HCK MUTATED                            0                                 1
  HCK WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HCK MUTATED                                                    5
  HCK WILD-TYPE                                                109
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HCK MUTATED                                            0
  HCK WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HCK MUTATED                                               0
  HCK WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  HCK MUTATED                                0
  HCK WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  HCK MUTATED                                    0                            0
  HCK WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  HCK MUTATED                               0
  HCK WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HCK MUTATED                                               0
  HCK WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  HCK MUTATED                              0
  HCK WILD-TYPE                            2
D115V5, multiclass
D115V6, binary
               cls
clus              0   1
  HCK MUTATED     0   6
  HCK WILD-TYPE  12 154
[1] "tbl2"
               cls
clus            [,1] [,2]
  HCK MUTATED      0    6
  HCK WILD-TYPE   12  154
     clus
vv    HCK MUTATED HCK WILD-TYPE
  NO            0            12
  YES           6           154
D115V7, continuous
D115V8, continuous
[1] "Remove cluster labels:" "HCK MUTATED"           
clus
  HCK MUTATED HCK WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4427    TCGA-05-4433 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-35-4122 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-44-2655 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-5645    TCGA-44-6145    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4494    TCGA-49-4505    TCGA-55-1592    TCGA-55-1594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-6642    TCGA-55-6712    TCGA-64-1677 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-91-6829 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6836 
"HCK WILD-TYPE" 
               vv
clus             M0  M1  MX
  HCK MUTATED     6   0   0
  HCK WILD-TYPE 132   9  23
D115V9, multiclass
    clus
vv   HCK MUTATED HCK WILD-TYPE
  M0           6           132
  M1           0             9
  MX           0            23
               vv
clus            N0 N1 N2 N3 NX
  HCK MUTATED    3  1  1  1  0
  HCK WILD-TYPE 92 36 33  0  4
D115V10, multiclass
               vv
clus             R0  R1  R2  RX
  HCK MUTATED     3   0   0   1
  HCK WILD-TYPE 102   5   4   9
D115V11, multiclass
    clus
vv   HCK MUTATED HCK WILD-TYPE
  R0           3           102
  R1           0             5
  R2           0             4
  RX           1             9
D115V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HCK MUTATED          3        1         0         0          1          1
  HCK WILD-TYPE       34       51        10        24         32          5
               vv
clus            STAGE IV
  HCK MUTATED          0
  HCK WILD-TYPE        9
D115V13, multiclass

Clustering(116) Variable = KDM5C MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2               0   1
  KDM5C MUTATED     3   4
  KDM5C WILD-TYPE 100  46
  KDM5C MUTATED KDM5C WILD-TYPE 
              7             146 
  KDM5C MUTATED KDM5C WILD-TYPE 
              4              46 
$`KDM5C MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-4434 TCGA-49-4486 
       37.02         9.96        14.93        29.95        15.02        76.21 
TCGA-64-1677 
       20.65 

$`KDM5C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       47.05         8.02        19.00        20.05         2.96         8.98 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 
        2.70        63.72        32.45        36.49        16.41        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KDM5C MUTATED KDM5C WILD-TYPE 
           9.96            0.07 
  KDM5C MUTATED KDM5C WILD-TYPE 
          76.21          120.79 
  KDM5C MUTATED KDM5C WILD-TYPE 
         20.650          14.025 
[1] "10.0 - 76.2 (20.6)" "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KDM5C WILD-TYPE"   "KDM5C MUTATED"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6836 
"KDM5C WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KDM5C WILD-TYPE"   "KDM5C MUTATED"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6836 
"KDM5C WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KDM5C WILD-TYPE"   "KDM5C MUTATED"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6836 
"KDM5C WILD-TYPE" 
[1] "hr=" "1.2"
D116V2, continuous
D116V3, binary
                 cls
clus               0  1
  KDM5C MUTATED    4  4
  KDM5C WILD-TYPE 89 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM5C MUTATED      4    4
  KDM5C WILD-TYPE   89   75
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  FEMALE             4              89
  MALE               4              75
D116V4, continuous
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KDM5C MUTATED                            0                                 5
  KDM5C WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KDM5C MUTATED                                                    3
  KDM5C WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KDM5C MUTATED                                            0
  KDM5C WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KDM5C MUTATED                                               0
  KDM5C WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KDM5C MUTATED                                0
  KDM5C WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KDM5C MUTATED                                    0
  KDM5C WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KDM5C MUTATED                              0                             0
  KDM5C WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KDM5C MUTATED                                               0
  KDM5C WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  KDM5C MUTATED                              0
  KDM5C WILD-TYPE                            2
D116V5, multiclass
D116V6, binary
                 cls
clus                0   1
  KDM5C MUTATED     0   8
  KDM5C WILD-TYPE  12 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM5C MUTATED      0    8
  KDM5C WILD-TYPE   12  152
     clus
vv    KDM5C MUTATED KDM5C WILD-TYPE
  NO              0              12
  YES             8             152
D116V7, continuous
D116V8, continuous
                 vv
clus               M0  M1  MX
  KDM5C MUTATED     6   2   0
  KDM5C WILD-TYPE 132   7  23
D116V9, multiclass
    clus
vv   KDM5C MUTATED KDM5C WILD-TYPE
  M0             6             132
  M1             2               7
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  KDM5C MUTATED    4  2  2  0  0
  KDM5C WILD-TYPE 91 35 32  1  4
D116V10, multiclass
                 vv
clus              R0 R1 R2 RX
  KDM5C MUTATED    6  0  1  1
  KDM5C WILD-TYPE 99  5  3  9
D116V11, multiclass
    clus
vv   KDM5C MUTATED KDM5C WILD-TYPE
  R0             6              99
  R1             0               5
  R2             1               3
  RX             1               9
D116V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KDM5C MUTATED          1        3         0         0          1          1
  KDM5C WILD-TYPE       36       49        10        24         32          5
                 vv
clus              STAGE IV
  KDM5C MUTATED          2
  KDM5C WILD-TYPE        7
D116V13, multiclass

Clustering(117) Variable = KIF9 MUTATION ANALYSIS
D117V1, survival
                sevent
clus2             0  1
  KIF9 MUTATED    5  1
  KIF9 WILD-TYPE 98 49
  KIF9 MUTATED KIF9 WILD-TYPE 
             6            147 
  KIF9 MUTATED KIF9 WILD-TYPE 
             1             49 
$`KIF9 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-50-5051 TCGA-64-1678 TCGA-91-6836 
        9.96        29.95       120.79        14.96        39.09         0.36 

$`KIF9 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  KIF9 MUTATED KIF9 WILD-TYPE 
          0.36           0.07 
  KIF9 MUTATED KIF9 WILD-TYPE 
        120.79          97.74 
  KIF9 MUTATED KIF9 WILD-TYPE 
        22.455         14.070 
[1] "0.4 - 120.8 (22.5)" "0.1 - 97.7 (14.1)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6836 
  "KIF9 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6836 
  "KIF9 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6836 
  "KIF9 MUTATED" 
[1] "hr=" "3.5"
D117V2, continuous
D117V3, binary
                cls
clus              0  1
  KIF9 MUTATED    5  2
  KIF9 WILD-TYPE 88 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  KIF9 MUTATED      5    2
  KIF9 WILD-TYPE   88   77
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  FEMALE            5             88
  MALE              2             77
D117V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KIF9 MUTATED                            0                                 2
  KIF9 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KIF9 MUTATED                                                    4
  KIF9 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KIF9 MUTATED                                            0
  KIF9 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KIF9 MUTATED                                               0
  KIF9 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  KIF9 MUTATED                                0
  KIF9 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  KIF9 MUTATED                                    1
  KIF9 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KIF9 MUTATED                              0                             0
  KIF9 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KIF9 MUTATED                                               0
  KIF9 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  KIF9 MUTATED                              0
  KIF9 WILD-TYPE                            2
D117V5, multiclass
D117V6, binary
                cls
clus               0   1
  KIF9 MUTATED     0   7
  KIF9 WILD-TYPE  12 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  KIF9 MUTATED      0    7
  KIF9 WILD-TYPE   12  153
     clus
vv    KIF9 MUTATED KIF9 WILD-TYPE
  NO             0             12
  YES            7            153
D117V7, continuous
D117V8, continuous
                vv
clus              M0  M1  MX
  KIF9 MUTATED     6   0   1
  KIF9 WILD-TYPE 132   9  22
D117V9, multiclass
    clus
vv   KIF9 MUTATED KIF9 WILD-TYPE
  M0            6            132
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  KIF9 MUTATED    4  2  1  0  0
  KIF9 WILD-TYPE 91 35 33  1  4
D117V10, multiclass
                vv
clus             R0 R1 R2 RX
  KIF9 MUTATED    6  0  0  0
  KIF9 WILD-TYPE 99  5  4 10
D117V11, multiclass
    clus
vv   KIF9 MUTATED KIF9 WILD-TYPE
  R0            6             99
  R1            0              5
  R2            0              4
  RX            0             10
D117V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KIF9 MUTATED          0        2         3         0          1          1
  KIF9 WILD-TYPE       37       50         7        24         32          5
                vv
clus             STAGE IV
  KIF9 MUTATED          0
  KIF9 WILD-TYPE        9
D117V13, multiclass

Clustering(118) Variable = BRS3 MUTATION ANALYSIS
D118V1, survival
                sevent
clus2             0  1
  BRS3 MUTATED    6  1
  BRS3 WILD-TYPE 97 49
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            146 
  BRS3 MUTATED BRS3 WILD-TYPE 
             1             49 
$`BRS3 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-55-5899 TCGA-67-3771 TCGA-67-6217 
       37.02         9.96        30.02         2.86        20.02        13.87 
TCGA-73-4662 
       29.95 

$`BRS3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.29         4.60 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  BRS3 MUTATED BRS3 WILD-TYPE 
          2.86           0.07 
  BRS3 MUTATED BRS3 WILD-TYPE 
         37.02         120.79 
  BRS3 MUTATED BRS3 WILD-TYPE 
         20.02          14.50 
[1] "2.9 - 37.0 (20.0)"  "0.1 - 120.8 (14.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BRS3 WILD-TYPE"   "BRS3 MUTATED"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6836 
"BRS3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BRS3 WILD-TYPE"   "BRS3 MUTATED"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6836 
"BRS3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BRS3 WILD-TYPE"   "BRS3 MUTATED"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6836 
"BRS3 WILD-TYPE" 
[1] "hr=" "2.1"
D118V2, continuous
D118V3, binary
                cls
clus              0  1
  BRS3 MUTATED    4  3
  BRS3 WILD-TYPE 89 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRS3 MUTATED      4    3
  BRS3 WILD-TYPE   89   76
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D118V4, continuous
[1] "Remove cluster labels:" "BRS3 MUTATED"          
clus
  BRS3 MUTATED BRS3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRS3 MUTATED                            0                                 3
  BRS3 WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRS3 MUTATED                                                    4
  BRS3 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRS3 MUTATED                                            0
  BRS3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRS3 MUTATED                                               0
  BRS3 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BRS3 MUTATED                                0
  BRS3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BRS3 MUTATED                                    0
  BRS3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BRS3 MUTATED                              0                             0
  BRS3 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRS3 MUTATED                                               0
  BRS3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  BRS3 MUTATED                              0
  BRS3 WILD-TYPE                            2
D118V5, multiclass
D118V6, binary
                cls
clus               0   1
  BRS3 MUTATED     0   7
  BRS3 WILD-TYPE  12 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRS3 MUTATED      0    7
  BRS3 WILD-TYPE   12  153
     clus
vv    BRS3 MUTATED BRS3 WILD-TYPE
  NO             0             12
  YES            7            153
D118V7, continuous
D118V8, continuous
                vv
clus              M0  M1  MX
  BRS3 MUTATED     7   0   0
  BRS3 WILD-TYPE 131   9  23
D118V9, multiclass
    clus
vv   BRS3 MUTATED BRS3 WILD-TYPE
  M0            7            131
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  BRS3 MUTATED    4  3  0  0  0
  BRS3 WILD-TYPE 91 34 34  1  4
D118V10, multiclass
                vv
clus             R0 R1 R2 RX
  BRS3 MUTATED    6  1  0  0
  BRS3 WILD-TYPE 99  4  4 10
D118V11, multiclass
    clus
vv   BRS3 MUTATED BRS3 WILD-TYPE
  R0            6             99
  R1            1              4
  R2            0              4
  RX            0             10
D118V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BRS3 MUTATED          3        1         0         2          0          1
  BRS3 WILD-TYPE       34       51        10        22         33          5
                vv
clus             STAGE IV
  BRS3 MUTATED          0
  BRS3 WILD-TYPE        9
D118V13, multiclass

Clustering(119) Variable = SIRPB1 MUTATION ANALYSIS
D119V1, survival
                  sevent
clus2                0   1
  SIRPB1 MUTATED     3   3
  SIRPB1 WILD-TYPE 100  47
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              147 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               3               47 
$`SIRPB1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-49-6743 TCGA-50-6593 TCGA-73-4659 TCGA-91-6836 
        9.96        26.01        12.13        11.05        23.38         0.36 

$`SIRPB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87         2.01        52.57        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
            0.36             0.07 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
           26.01           120.79 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
           11.59            14.96 
[1] "0.4 - 26.0 (11.6)"  "0.1 - 120.8 (15.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6836 
  "SIRPB1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6836 
  "SIRPB1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6836 
  "SIRPB1 MUTATED" 
[1] "hr=" "3"  
D119V2, continuous
D119V3, binary
                  cls
clus                0  1
  SIRPB1 MUTATED    4  2
  SIRPB1 WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SIRPB1 MUTATED      4    2
  SIRPB1 WILD-TYPE   89   77
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D119V4, continuous
[1] "Remove cluster labels:" "SIRPB1 MUTATED"        
clus
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SIRPB1 MUTATED                            0                                 3
  SIRPB1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SIRPB1 MUTATED                                                    2
  SIRPB1 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SIRPB1 MUTATED                                            0
  SIRPB1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SIRPB1 MUTATED                                               0
  SIRPB1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  SIRPB1 MUTATED                                1
  SIRPB1 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  SIRPB1 MUTATED                                    0
  SIRPB1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SIRPB1 MUTATED                              0                             0
  SIRPB1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SIRPB1 MUTATED                                               0
  SIRPB1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  SIRPB1 MUTATED                              0
  SIRPB1 WILD-TYPE                            2
D119V5, multiclass
D119V6, binary
                  cls
clus                 0   1
  SIRPB1 MUTATED     0   6
  SIRPB1 WILD-TYPE  12 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SIRPB1 MUTATED      0    6
  SIRPB1 WILD-TYPE   12  154
     clus
vv    SIRPB1 MUTATED SIRPB1 WILD-TYPE
  NO               0               12
  YES              6              154
D119V7, continuous
D119V8, continuous
                  vv
clus                M0  M1  MX
  SIRPB1 MUTATED     4   0   2
  SIRPB1 WILD-TYPE 134   9  21
D119V9, multiclass
    clus
vv   SIRPB1 MUTATED SIRPB1 WILD-TYPE
  M0              4              134
  M1              0                9
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  SIRPB1 MUTATED    1  2  3  0  0
  SIRPB1 WILD-TYPE 94 35 31  1  4
D119V10, multiclass
                  vv
clus                R0  R1  R2  RX
  SIRPB1 MUTATED     3   0   0   0
  SIRPB1 WILD-TYPE 102   5   4  10
D119V11, multiclass
    clus
vv   SIRPB1 MUTATED SIRPB1 WILD-TYPE
  R0              3              102
  R1              0                5
  R2              0                4
  RX              0               10
D119V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SIRPB1 MUTATED          0        1         0         1          3          1
  SIRPB1 WILD-TYPE       37       51        10        23         30          5
                  vv
clus               STAGE IV
  SIRPB1 MUTATED          0
  SIRPB1 WILD-TYPE        9
D119V13, multiclass

Clustering(120) Variable = RP1L1 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  RP1L1 MUTATED   20 11
  RP1L1 WILD-TYPE 83 39
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             31             122 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             11              39 
$`RP1L1 MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 
       38.07         3.98        19.92         9.96        47.05         2.96 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-38-4631 TCGA-38-4632 
       30.02        26.01        25.02        97.74        11.64        44.61 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4514 TCGA-49-6744 TCGA-50-5045 
       36.49        16.41        28.11        43.20        12.99        71.47 
TCGA-50-5049 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-50-6590 TCGA-55-5899 
       48.82        77.88         8.45         9.37        42.31         2.86 
TCGA-55-6712 TCGA-64-5779 TCGA-64-5781 TCGA-67-3773 TCGA-73-4666 TCGA-73-4668 
        0.79        16.67        39.52        14.04        20.28        15.35 
TCGA-91-6828 
        1.22 

$`RP1L1 WILD-TYPE`
TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 
       14.01        45.01        37.02        24.03         8.02        19.00 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
       20.05        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68       120.79        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       63.72        32.45        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 
       15.02        12.13         4.93        20.48        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       21.47        15.12         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       38.73        48.62        45.17         0.07        32.61        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99        20.02        18.84        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.25        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  RP1L1 MUTATED RP1L1 WILD-TYPE 
           0.79            0.07 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
          97.74          120.79 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
          20.28           13.15 
[1] "0.8 - 97.7 (20.3)"  "0.1 - 120.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RP1L1 MUTATED"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-91-6836 
"RP1L1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RP1L1 MUTATED"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-91-6836 
"RP1L1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RP1L1 MUTATED"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-91-6836 
"RP1L1 WILD-TYPE" 
[1] "hr=" "1.5"
D120V2, continuous
D120V3, binary
                 cls
clus               0  1
  RP1L1 MUTATED   17 15
  RP1L1 WILD-TYPE 76 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RP1L1 MUTATED     17   15
  RP1L1 WILD-TYPE   76   64
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D120V4, continuous
[1] "Remove cluster labels:" "RP1L1 MUTATED"         
clus
  RP1L1 MUTATED RP1L1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RP1L1 MUTATED                            1                                10
  RP1L1 WILD-TYPE                          1                                29
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RP1L1 MUTATED                                                   18
  RP1L1 WILD-TYPE                                                 96
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RP1L1 MUTATED                                            0
  RP1L1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RP1L1 MUTATED                                               0
  RP1L1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RP1L1 MUTATED                                0
  RP1L1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RP1L1 MUTATED                                    1
  RP1L1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RP1L1 MUTATED                              0                             1
  RP1L1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RP1L1 MUTATED                                               0
  RP1L1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RP1L1 MUTATED                              1
  RP1L1 WILD-TYPE                            1
D120V5, multiclass
D120V6, binary
                 cls
clus                0   1
  RP1L1 MUTATED     3  29
  RP1L1 WILD-TYPE   9 131
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RP1L1 MUTATED      3   29
  RP1L1 WILD-TYPE    9  131
     clus
vv    RP1L1 MUTATED RP1L1 WILD-TYPE
  NO              3               9
  YES            29             131
D120V7, continuous
D120V8, continuous
                 vv
clus               M0  M1  MX
  RP1L1 MUTATED    25   2   5
  RP1L1 WILD-TYPE 113   7  18
D120V9, multiclass
    clus
vv   RP1L1 MUTATED RP1L1 WILD-TYPE
  M0            25             113
  M1             2               7
  MX             5              18
                 vv
clus              N0 N1 N2 N3 NX
  RP1L1 MUTATED   16 10  5  1  0
  RP1L1 WILD-TYPE 79 27 29  0  4
D120V10, multiclass
                 vv
clus              R0 R1 R2 RX
  RP1L1 MUTATED   17  1  1  3
  RP1L1 WILD-TYPE 88  4  3  7
D120V11, multiclass
    clus
vv   RP1L1 MUTATED RP1L1 WILD-TYPE
  R0            17              88
  R1             1               4
  R2             1               3
  RX             3               7
D120V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RP1L1 MUTATED          7        9         2         4          4          4
  RP1L1 WILD-TYPE       30       43         8        20         29          2
                 vv
clus              STAGE IV
  RP1L1 MUTATED          2
  RP1L1 WILD-TYPE        7
D120V13, multiclass

Clustering(121) Variable = COL3A1 MUTATION ANALYSIS
D121V1, survival
                  sevent
clus2               0  1
  COL3A1 MUTATED   15  5
  COL3A1 WILD-TYPE 88 45
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              20              133 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
               5               45 
$`COL3A1 MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4427 TCGA-38-4631 TCGA-44-2656 TCGA-44-2659 
       24.03        47.05        26.01        11.64        19.10        17.39 
TCGA-44-4112 TCGA-44-6774 TCGA-49-4506 TCGA-49-4514 TCGA-49-6744 TCGA-50-5049 
        4.60         5.42        32.84        43.20        12.99        48.82 
TCGA-50-5941 TCGA-50-6593 TCGA-64-1676 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 
        9.37        11.05        56.81        39.52        20.02        14.04 
TCGA-73-4658 TCGA-73-4662 
       52.57        29.95 

$`COL3A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
        9.96         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 
       35.28        44.61         5.19        18.87        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       15.02        12.13         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       12.26        11.47        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.99        18.84        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        23.38        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  COL3A1 MUTATED COL3A1 WILD-TYPE 
            4.60             0.07 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
           56.81           120.79 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
          22.025           13.870 
[1] "4.6 - 56.8 (22.0)"  "0.1 - 120.8 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6836 
"COL3A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6836 
"COL3A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6836 
"COL3A1 WILD-TYPE" 
[1] "hr=" "1.9"
D121V2, continuous
D121V3, binary
                  cls
clus                0  1
  COL3A1 MUTATED   18  4
  COL3A1 WILD-TYPE 75 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL3A1 MUTATED     18    4
  COL3A1 WILD-TYPE   75   75
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  FEMALE             18               75
  MALE                4               75
D121V4, continuous
[1] "Remove cluster labels:" "COL3A1 MUTATED"        
clus
  COL3A1 MUTATED COL3A1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL3A1 MUTATED                            0                                 6
  COL3A1 WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL3A1 MUTATED                                                   15
  COL3A1 WILD-TYPE                                                 99
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL3A1 MUTATED                                            0
  COL3A1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL3A1 MUTATED                                               0
  COL3A1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  COL3A1 MUTATED                                0
  COL3A1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  COL3A1 MUTATED                                    0
  COL3A1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL3A1 MUTATED                              0                             1
  COL3A1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL3A1 MUTATED                                               0
  COL3A1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  COL3A1 MUTATED                              0
  COL3A1 WILD-TYPE                            2
D121V5, multiclass
D121V6, binary
                  cls
clus                 0   1
  COL3A1 MUTATED     0  22
  COL3A1 WILD-TYPE  12 138
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL3A1 MUTATED      0   22
  COL3A1 WILD-TYPE   12  138
     clus
vv    COL3A1 MUTATED COL3A1 WILD-TYPE
  NO               0               12
  YES             22              138
D121V7, continuous
D121V8, continuous
                  vv
clus                M0  M1  MX
  COL3A1 MUTATED    20   0   2
  COL3A1 WILD-TYPE 118   9  21
D121V9, multiclass
    clus
vv   COL3A1 MUTATED COL3A1 WILD-TYPE
  M0             20              118
  M1              0                9
  MX              2               21
                  vv
clus               N0 N1 N2 N3 NX
  COL3A1 MUTATED   13  5  3  1  0
  COL3A1 WILD-TYPE 82 32 31  0  4
D121V10, multiclass
                  vv
clus               R0 R1 R2 RX
  COL3A1 MUTATED   14  1  0  2
  COL3A1 WILD-TYPE 91  4  4  8
D121V11, multiclass
    clus
vv   COL3A1 MUTATED COL3A1 WILD-TYPE
  R0             14               91
  R1              1                4
  R2              0                4
  RX              2                8
D121V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL3A1 MUTATED          5        7         1         5          3          1
  COL3A1 WILD-TYPE       32       45         9        19         30          5
                  vv
clus               STAGE IV
  COL3A1 MUTATED          0
  COL3A1 WILD-TYPE        9
D121V13, multiclass

Clustering(122) Variable = LPPR4 MUTATION ANALYSIS
D122V1, survival
                 sevent
clus2              0  1
  LPPR4 MUTATED    8  5
  LPPR4 WILD-TYPE 95 45
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             140 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              5              45 
$`LPPR4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4631 TCGA-44-2656 TCGA-44-4112 TCGA-44-6145 
       19.92         9.96        11.64        19.10         4.60         3.35 
TCGA-44-6147 TCGA-50-5045 TCGA-50-5936 TCGA-50-6590 TCGA-64-1676 TCGA-67-3773 
        7.76        71.47         8.45        42.31        56.81        14.04 
TCGA-73-4668 
       15.35 

$`LPPR4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.44         6.21         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        0.30         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       20.02        18.84        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LPPR4 MUTATED LPPR4 WILD-TYPE 
           3.35            0.07 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
          71.47          120.79 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
         14.040          14.945 
[1] "3.4 - 71.5 (14.0)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6836 
"LPPR4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6836 
"LPPR4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6836 
"LPPR4 WILD-TYPE" 
[1] "hr=" "1.1"
D122V2, continuous
D122V3, binary
                 cls
clus               0  1
  LPPR4 MUTATED    9  5
  LPPR4 WILD-TYPE 84 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      9    5
  LPPR4 WILD-TYPE   84   74
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             9              84
  MALE               5              74
D122V4, continuous
[1] "Remove cluster labels:" "LPPR4 MUTATED"         
clus
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LPPR4 MUTATED                            0                                 2
  LPPR4 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LPPR4 MUTATED                                                   10
  LPPR4 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LPPR4 MUTATED                                            0
  LPPR4 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LPPR4 MUTATED                                               0
  LPPR4 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LPPR4 MUTATED                                0
  LPPR4 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LPPR4 MUTATED                                    1
  LPPR4 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LPPR4 MUTATED                              0                             0
  LPPR4 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LPPR4 MUTATED                                               0
  LPPR4 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LPPR4 MUTATED                              1
  LPPR4 WILD-TYPE                            1
D122V5, multiclass
D122V6, binary
                 cls
clus                0   1
  LPPR4 MUTATED     1  13
  LPPR4 WILD-TYPE  11 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      1   13
  LPPR4 WILD-TYPE   11  147
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  NO              1              11
  YES            13             147
D122V7, continuous
D122V8, continuous
                 vv
clus               M0  M1  MX
  LPPR4 MUTATED    13   0   1
  LPPR4 WILD-TYPE 125   9  22
D122V9, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  M0            13             125
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  LPPR4 MUTATED    9  3  1  0  1
  LPPR4 WILD-TYPE 86 34 33  1  3
D122V10, multiclass
                 vv
clus              R0 R1 R2 RX
  LPPR4 MUTATED    8  0  0  0
  LPPR4 WILD-TYPE 97  5  4 10
D122V11, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  R0             8              97
  R1             0               5
  R2             0               4
  RX             0              10
D122V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LPPR4 MUTATED          4        6         0         2          1          1
  LPPR4 WILD-TYPE       33       46        10        22         32          5
                 vv
clus              STAGE IV
  LPPR4 MUTATED          0
  LPPR4 WILD-TYPE        9
D122V13, multiclass

Clustering(123) Variable = HOXA3 MUTATION ANALYSIS
D123V1, survival
                 sevent
clus2               0   1
  HOXA3 MUTATED     2   2
  HOXA3 WILD-TYPE 101  48
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              4             149 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              2              48 
$`HOXA3 MUTATED`
TCGA-05-4396 TCGA-38-4629 TCGA-49-6743 TCGA-64-5778 
        9.96        28.37        12.13        30.44 

$`HOXA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84         0.10        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  HOXA3 MUTATED HOXA3 WILD-TYPE 
           9.96            0.07 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
          30.44          120.79 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
          20.25           14.93 
[1] "10.0 - 30.4 (20.2)" "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6836 
"HOXA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6836 
"HOXA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6836 
"HOXA3 WILD-TYPE" 
[1] "hr=" "1.8"
D123V2, continuous
D123V3, binary
                 cls
clus               0  1
  HOXA3 MUTATED    2  4
  HOXA3 WILD-TYPE 91 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA3 MUTATED      2    4
  HOXA3 WILD-TYPE   91   75
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  FEMALE             2              91
  MALE               4              75
D123V4, continuous
[1] "Remove cluster labels:" "HOXA3 MUTATED"         
clus
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HOXA3 MUTATED                            0                                 2
  HOXA3 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HOXA3 MUTATED                                                    2
  HOXA3 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HOXA3 MUTATED                                            0
  HOXA3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HOXA3 MUTATED                                               1
  HOXA3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  HOXA3 MUTATED                                1
  HOXA3 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  HOXA3 MUTATED                                    0
  HOXA3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HOXA3 MUTATED                              0                             0
  HOXA3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HOXA3 MUTATED                                               0
  HOXA3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  HOXA3 MUTATED                              0
  HOXA3 WILD-TYPE                            2
D123V5, multiclass
D123V6, binary
                 cls
clus                0   1
  HOXA3 MUTATED     0   6
  HOXA3 WILD-TYPE  12 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA3 MUTATED      0    6
  HOXA3 WILD-TYPE   12  154
     clus
vv    HOXA3 MUTATED HOXA3 WILD-TYPE
  NO              0              12
  YES             6             154
D123V7, continuous
D123V8, continuous
                 vv
clus               M0  M1  MX
  HOXA3 MUTATED     4   0   2
  HOXA3 WILD-TYPE 134   9  21
D123V9, multiclass
    clus
vv   HOXA3 MUTATED HOXA3 WILD-TYPE
  M0             4             134
  M1             0               9
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  HOXA3 MUTATED    3  2  1  0  0
  HOXA3 WILD-TYPE 92 35 33  1  4
D123V10, multiclass
                 vv
clus               R0  R1  R2  RX
  HOXA3 MUTATED     5   0   0   0
  HOXA3 WILD-TYPE 100   5   4  10
D123V11, multiclass
    clus
vv   HOXA3 MUTATED HOXA3 WILD-TYPE
  R0             5             100
  R1             0               5
  R2             0               4
  RX             0              10
D123V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HOXA3 MUTATED          0        1         1         2          1          1
  HOXA3 WILD-TYPE       37       51         9        22         32          5
                 vv
clus              STAGE IV
  HOXA3 MUTATED          0
  HOXA3 WILD-TYPE        9
D123V13, multiclass

Clustering(124) Variable = OR56A4 MUTATION ANALYSIS
D124V1, survival
                  sevent
clus2               0  1
  OR56A4 MUTATED    4  2
  OR56A4 WILD-TYPE 99 48
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              147 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2               48 
$`OR56A4 MUTATED`
TCGA-05-4382 TCGA-44-6778 TCGA-50-6590 TCGA-55-1592 TCGA-64-1676 TCGA-73-4662 
       19.92        36.49        42.31        23.05        56.81        29.95 

$`OR56A4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR56A4 MUTATED OR56A4 WILD-TYPE 
           19.92             0.07 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
           56.81           120.79 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
           33.22            14.01 
[1] "19.9 - 56.8 (33.2)" "0.1 - 120.8 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6836 
"OR56A4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6836 
"OR56A4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6836 
"OR56A4 WILD-TYPE" 
[1] "hr=" "1.8"
D124V2, continuous
D124V3, binary
                  cls
clus                0  1
  OR56A4 MUTATED    2  4
  OR56A4 WILD-TYPE 91 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR56A4 MUTATED      2    4
  OR56A4 WILD-TYPE   91   75
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  FEMALE              2               91
  MALE                4               75
D124V4, continuous
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR56A4 MUTATED                            0                                 1
  OR56A4 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR56A4 MUTATED                                                    5
  OR56A4 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR56A4 MUTATED                                            0
  OR56A4 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR56A4 MUTATED                                               0
  OR56A4 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR56A4 MUTATED                                0
  OR56A4 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR56A4 MUTATED                                    0
  OR56A4 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR56A4 MUTATED                              0                             0
  OR56A4 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR56A4 MUTATED                                               0
  OR56A4 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR56A4 MUTATED                              0
  OR56A4 WILD-TYPE                            2
D124V5, multiclass
D124V6, binary
                  cls
clus                 0   1
  OR56A4 MUTATED     0   6
  OR56A4 WILD-TYPE  12 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR56A4 MUTATED      0    6
  OR56A4 WILD-TYPE   12  154
     clus
vv    OR56A4 MUTATED OR56A4 WILD-TYPE
  NO               0               12
  YES              6              154
D124V7, continuous
D124V8, continuous
                  vv
clus                M0  M1  MX
  OR56A4 MUTATED     5   0   1
  OR56A4 WILD-TYPE 133   9  22
D124V9, multiclass
    clus
vv   OR56A4 MUTATED OR56A4 WILD-TYPE
  M0              5              133
  M1              0                9
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  OR56A4 MUTATED    6  0  0  0  0
  OR56A4 WILD-TYPE 89 37 34  1  4
D124V10, multiclass
                  vv
clus                R0  R1  R2  RX
  OR56A4 MUTATED     4   0   0   0
  OR56A4 WILD-TYPE 101   5   4  10
D124V11, multiclass
    clus
vv   OR56A4 MUTATED OR56A4 WILD-TYPE
  R0              4              101
  R1              0                5
  R2              0                4
  RX              0               10
D124V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR56A4 MUTATED          4        2         0         0          0          0
  OR56A4 WILD-TYPE       33       50        10        24         33          6
                  vv
clus               STAGE IV
  OR56A4 MUTATED          0
  OR56A4 WILD-TYPE        9
D124V13, multiclass

Clustering(125) Variable = KDR MUTATION ANALYSIS
D125V1, survival
               sevent
clus2            0  1
  KDR MUTATED   15  5
  KDR WILD-TYPE 88 45
  KDR MUTATED KDR WILD-TYPE 
           20           133 
  KDR MUTATED KDR WILD-TYPE 
            5            45 
$`KDR MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4424 TCGA-05-4430 TCGA-38-4626 
       19.92        14.01         9.96        30.02        25.02       120.79 
TCGA-38-4631 TCGA-44-2659 TCGA-44-4112 TCGA-44-6776 TCGA-50-5049 TCGA-50-5066 
       11.64        17.39         4.60        63.72        48.82         9.76 
TCGA-50-6590 TCGA-50-6594 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-67-3773 
       42.31        12.16         0.10        30.44        39.52        14.04 
TCGA-73-4666 TCGA-73-4668 
       20.28        15.35 

$`KDR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        45.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
       29.95        12.00        21.99        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       39.09        37.02        83.84        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       20.02        18.84        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        23.38        29.95         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KDR MUTATED KDR WILD-TYPE 
         0.10          0.07 
  KDR MUTATED KDR WILD-TYPE 
       120.79         97.74 
  KDR MUTATED KDR WILD-TYPE 
       18.655        13.870 
[1] "0.1 - 120.8 (18.7)" "0.1 - 97.7 (13.9)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
[1] "hr=" "1.8"
D125V2, continuous
D125V3, binary
               cls
clus             0  1
  KDR MUTATED   12  8
  KDR WILD-TYPE 81 71
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED     12    8
  KDR WILD-TYPE   81   71
        clus
vv       KDR MUTATED KDR WILD-TYPE
  FEMALE          12            81
  MALE             8            71
D125V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KDR MUTATED                            0                                 7
  KDR WILD-TYPE                          2                                32
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KDR MUTATED                                                   11
  KDR WILD-TYPE                                                103
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KDR MUTATED                                            0
  KDR WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KDR MUTATED                                               1
  KDR WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  KDR MUTATED                                0
  KDR WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  KDR MUTATED                                    1                            0
  KDR WILD-TYPE                                  1                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  KDR MUTATED                               0
  KDR WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KDR MUTATED                                               0
  KDR WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  KDR MUTATED                              0
  KDR WILD-TYPE                            2
D125V5, multiclass
D125V6, binary
               cls
clus              0   1
  KDR MUTATED     1  19
  KDR WILD-TYPE  11 141
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED      1   19
  KDR WILD-TYPE   11  141
     clus
vv    KDR MUTATED KDR WILD-TYPE
  NO            1            11
  YES          19           141
D125V7, continuous
D125V8, continuous
               vv
clus             M0  M1  MX
  KDR MUTATED    18   1   1
  KDR WILD-TYPE 120   8  22
D125V9, multiclass
    clus
vv   KDR MUTATED KDR WILD-TYPE
  M0          18           120
  M1           1             8
  MX           1            22
               vv
clus            N0 N1 N2 N3 NX
  KDR MUTATED   15  3  2  0  0
  KDR WILD-TYPE 80 34 32  1  4
D125V10, multiclass
               vv
clus            R0 R1 R2 RX
  KDR MUTATED   14  1  0  1
  KDR WILD-TYPE 91  4  4  9
D125V11, multiclass
    clus
vv   KDR MUTATED KDR WILD-TYPE
  R0          14            91
  R1           1             4
  R2           0             4
  RX           1             9
D125V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KDR MUTATED          2        9         1         3          3          1
  KDR WILD-TYPE       35       43         9        21         30          5
               vv
clus            STAGE IV
  KDR MUTATED          1
  KDR WILD-TYPE        8
D125V13, multiclass

Clustering(126) Variable = ANKRD44 MUTATION ANALYSIS
D126V1, survival
                   sevent
clus2                 0   1
  ANKRD44 MUTATED     3   4
  ANKRD44 WILD-TYPE 100  46
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                7               146 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                4                46 
$`ANKRD44 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-38-4632 TCGA-44-6144 TCGA-49-6745 TCGA-50-6590 
        9.96        11.64        44.61         0.30         4.93        42.31 
TCGA-67-3771 
       20.02 

$`ANKRD44 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        35.28         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        12.99        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
             0.30              0.07 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
            44.61            120.79 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
           11.640            14.945 
[1] "0.3 - 44.6 (11.6)"  "0.1 - 120.8 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD44 MUTATED"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD44 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD44 MUTATED"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD44 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD44 MUTATED"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD44 WILD-TYPE" 
[1] "hr=" "2"  
D126V2, continuous
D126V3, binary
                   cls
clus                 0  1
  ANKRD44 MUTATED    4  5
  ANKRD44 WILD-TYPE 89 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD44 MUTATED      4    5
  ANKRD44 WILD-TYPE   89   74
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  FEMALE               4                89
  MALE                 5                74
D126V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ANKRD44 MUTATED                            0
  ANKRD44 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANKRD44 MUTATED                                   1
  ANKRD44 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANKRD44 MUTATED                                                    6
  ANKRD44 WILD-TYPE                                                108
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANKRD44 MUTATED                                            0
  ANKRD44 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANKRD44 MUTATED                                               0
  ANKRD44 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ANKRD44 MUTATED                                0
  ANKRD44 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ANKRD44 MUTATED                                    0
  ANKRD44 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANKRD44 MUTATED                              0                             2
  ANKRD44 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANKRD44 MUTATED                                               0
  ANKRD44 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ANKRD44 MUTATED                              0
  ANKRD44 WILD-TYPE                            2
D126V5, multiclass
D126V6, binary
                   cls
clus                  0   1
  ANKRD44 MUTATED     0   9
  ANKRD44 WILD-TYPE  12 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD44 MUTATED      0    9
  ANKRD44 WILD-TYPE   12  151
     clus
vv    ANKRD44 MUTATED ANKRD44 WILD-TYPE
  NO                0                12
  YES               9               151
D126V7, continuous
D126V8, continuous
[1] "Remove cluster labels:" "ANKRD44 MUTATED"       
clus
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4405        TCGA-05-4410 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4424        TCGA-05-4427 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4433        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5428        TCGA-35-4122        TCGA-35-4123        TCGA-35-5375 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4625        TCGA-38-4626        TCGA-44-2655        TCGA-44-2656 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5645        TCGA-44-6145        TCGA-44-6147 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-55-1592        TCGA-55-1594 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5781        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6836 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
                   vv
clus                 M0  M1  MX
  ANKRD44 MUTATED     7   1   1
  ANKRD44 WILD-TYPE 131   8  22
D126V9, multiclass
    clus
vv   ANKRD44 MUTATED ANKRD44 WILD-TYPE
  M0               7               131
  M1               1                 8
  MX               1                22
                   vv
clus                N0 N1 N2 N3 NX
  ANKRD44 MUTATED    5  2  2  0  0
  ANKRD44 WILD-TYPE 90 35 32  1  4
D126V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  ANKRD44 MUTATED     5   0   1   1
  ANKRD44 WILD-TYPE 100   5   3   9
D126V11, multiclass
    clus
vv   ANKRD44 MUTATED ANKRD44 WILD-TYPE
  R0               5               100
  R1               0                 5
  R2               1                 3
  RX               1                 9
D126V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ANKRD44 MUTATED          2        3         0         0          2          1
  ANKRD44 WILD-TYPE       35       49        10        24         31          5
                   vv
clus                STAGE IV
  ANKRD44 MUTATED          1
  ANKRD44 WILD-TYPE        8
D126V13, multiclass

Clustering(127) Variable = MFSD8 MUTATION ANALYSIS
D127V1, survival
                 sevent
clus2               0   1
  MFSD8 MUTATED     3   2
  MFSD8 WILD-TYPE 100  48
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             148 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              2              48 
$`MFSD8 MUTATED`
TCGA-05-4396 TCGA-44-2662 TCGA-55-1592 TCGA-64-1678 TCGA-67-3771 
        9.96        15.78        23.05        39.09        20.02 

$`MFSD8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
       18.87        19.10        13.15        17.39         3.39        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 
        0.07        32.61         0.79        56.81        20.65        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MFSD8 MUTATED MFSD8 WILD-TYPE 
           9.96            0.07 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
          39.09          120.79 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
         20.020          14.055 
[1] "10.0 - 39.1 (20.0)" "0.1 - 120.8 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6836 
"MFSD8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6836 
"MFSD8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6836 
"MFSD8 WILD-TYPE" 
[1] "hr=" "1.4"
D127V2, continuous
D127V3, binary
                 cls
clus               0  1
  MFSD8 MUTATED    2  3
  MFSD8 WILD-TYPE 91 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFSD8 MUTATED      2    3
  MFSD8 WILD-TYPE   91   76
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  FEMALE             2              91
  MALE               3              76
D127V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MFSD8 MUTATED                            0                                 1
  MFSD8 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MFSD8 MUTATED                                                    4
  MFSD8 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MFSD8 MUTATED                                            0
  MFSD8 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MFSD8 MUTATED                                               0
  MFSD8 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MFSD8 MUTATED                                0
  MFSD8 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MFSD8 MUTATED                                    0
  MFSD8 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MFSD8 MUTATED                              0                             0
  MFSD8 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MFSD8 MUTATED                                               0
  MFSD8 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  MFSD8 MUTATED                              0
  MFSD8 WILD-TYPE                            2
D127V5, multiclass
D127V6, binary
                 cls
clus                0   1
  MFSD8 MUTATED     0   5
  MFSD8 WILD-TYPE  12 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFSD8 MUTATED      0    5
  MFSD8 WILD-TYPE   12  155
     clus
vv    MFSD8 MUTATED MFSD8 WILD-TYPE
  NO              0              12
  YES             5             155
D127V7, continuous
D127V8, continuous
                 vv
clus               M0  M1  MX
  MFSD8 MUTATED     5   0   0
  MFSD8 WILD-TYPE 133   9  23
D127V9, multiclass
    clus
vv   MFSD8 MUTATED MFSD8 WILD-TYPE
  M0             5             133
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  MFSD8 MUTATED    4  1  0  0  0
  MFSD8 WILD-TYPE 91 36 34  1  4
D127V10, multiclass
                 vv
clus               R0  R1  R2  RX
  MFSD8 MUTATED     5   0   0   0
  MFSD8 WILD-TYPE 100   5   4  10
D127V11, multiclass
    clus
vv   MFSD8 MUTATED MFSD8 WILD-TYPE
  R0             5             100
  R1             0               5
  R2             0               4
  RX             0              10
D127V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MFSD8 MUTATED          2        1         1         0          0          1
  MFSD8 WILD-TYPE       35       51         9        24         33          5
                 vv
clus              STAGE IV
  MFSD8 MUTATED          0
  MFSD8 WILD-TYPE        9
D127V13, multiclass

Clustering(128) Variable = ZNF260 MUTATION ANALYSIS
D128V1, survival
                  sevent
clus2                0   1
  ZNF260 MUTATED     2   1
  ZNF260 WILD-TYPE 101  49
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               3              150 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               1               49 
$`ZNF260 MUTATED`
TCGA-05-4424 TCGA-44-6774 TCGA-49-4487 
       30.02         5.42        28.11 

$`ZNF260 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  ZNF260 MUTATED ZNF260 WILD-TYPE 
            5.42             0.07 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
           30.02           120.79 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
           28.11            14.50 
[1] "5.4 - 30.0 (28.1)"  "0.1 - 120.8 (14.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE"   "ZNF260 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6836 
"ZNF260 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE"   "ZNF260 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6836 
"ZNF260 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE"   "ZNF260 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6836 
"ZNF260 WILD-TYPE" 
[1] "hr=" "1.1"
D128V2, continuous
D128V3, binary
                  cls
clus                0  1
  ZNF260 MUTATED    2  2
  ZNF260 WILD-TYPE 91 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF260 MUTATED      2    2
  ZNF260 WILD-TYPE   91   77
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D128V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF260 MUTATED                            0                                 2
  ZNF260 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF260 MUTATED                                                    2
  ZNF260 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF260 MUTATED                                            0
  ZNF260 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF260 MUTATED                                               0
  ZNF260 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF260 MUTATED                                0
  ZNF260 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF260 MUTATED                                    0
  ZNF260 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF260 MUTATED                              0                             0
  ZNF260 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF260 MUTATED                                               0
  ZNF260 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ZNF260 MUTATED                              0
  ZNF260 WILD-TYPE                            2
D128V5, multiclass
D128V6, binary
                  cls
clus                 0   1
  ZNF260 MUTATED     0   4
  ZNF260 WILD-TYPE  12 156
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF260 MUTATED      0    4
  ZNF260 WILD-TYPE   12  156
     clus
vv    ZNF260 MUTATED ZNF260 WILD-TYPE
  NO               0               12
  YES              4              156
D128V7, continuous
D128V8, continuous
                  vv
clus                M0  M1  MX
  ZNF260 MUTATED     4   0   0
  ZNF260 WILD-TYPE 134   9  23
D128V9, multiclass
    clus
vv   ZNF260 MUTATED ZNF260 WILD-TYPE
  M0              4              134
  M1              0                9
  MX              0               23
                  vv
clus               N0 N1 N2 N3 NX
  ZNF260 MUTATED    3  0  1  0  0
  ZNF260 WILD-TYPE 92 37 33  1  4
D128V10, multiclass
                  vv
clus                R0  R1  R2  RX
  ZNF260 MUTATED     1   1   0   1
  ZNF260 WILD-TYPE 104   4   4   9
D128V11, multiclass
    clus
vv   ZNF260 MUTATED ZNF260 WILD-TYPE
  R0              1              104
  R1              1                4
  R2              0                4
  RX              1                9
D128V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZNF260 MUTATED          1        1         0         1          1          0
  ZNF260 WILD-TYPE       36       51        10        23         32          6
                  vv
clus               STAGE IV
  ZNF260 MUTATED          0
  ZNF260 WILD-TYPE        9
D128V13, multiclass

Clustering(129) Variable = C1ORF49 MUTATION ANALYSIS
D129V1, survival
                   sevent
clus2                0  1
  C1ORF49 MUTATED    5  1
  C1ORF49 WILD-TYPE 98 49
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               147 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                49 
$`C1ORF49 MUTATED`
TCGA-05-4424 TCGA-35-5375 TCGA-55-6712 TCGA-64-1677 TCGA-64-5778 TCGA-91-6836 
       30.02         8.68         0.79        20.65        30.44         0.36 

$`C1ORF49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 
        2.86         0.07        32.61        56.81        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
             0.36              0.07 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
            30.44            120.79 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
           14.665            14.930 
[1] "0.4 - 30.4 (14.7)"  "0.1 - 120.8 (14.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
[1] "hr=" "1.3"
D129V2, continuous
D129V3, binary
                   cls
clus                 0  1
  C1ORF49 MUTATED    2  4
  C1ORF49 WILD-TYPE 91 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      2    4
  C1ORF49 WILD-TYPE   91   75
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  FEMALE               2                91
  MALE                 4                75
D129V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C1ORF49 MUTATED                            0
  C1ORF49 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C1ORF49 MUTATED                                   1
  C1ORF49 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C1ORF49 MUTATED                                                    4
  C1ORF49 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C1ORF49 MUTATED                                            0
  C1ORF49 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C1ORF49 MUTATED                                               1
  C1ORF49 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C1ORF49 MUTATED                                0
  C1ORF49 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C1ORF49 MUTATED                                    0
  C1ORF49 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C1ORF49 MUTATED                              0                             0
  C1ORF49 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C1ORF49 MUTATED                                               0
  C1ORF49 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C1ORF49 MUTATED                              0
  C1ORF49 WILD-TYPE                            2
D129V5, multiclass
D129V6, binary
                   cls
clus                  0   1
  C1ORF49 MUTATED     0   6
  C1ORF49 WILD-TYPE  12 154
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      0    6
  C1ORF49 WILD-TYPE   12  154
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  NO                0                12
  YES               6               154
D129V7, continuous
D129V8, continuous
                   vv
clus                 M0  M1  MX
  C1ORF49 MUTATED     4   0   2
  C1ORF49 WILD-TYPE 134   9  21
D129V9, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  M0               4               134
  M1               0                 9
  MX               2                21
                   vv
clus                N0 N1 N2 N3 NX
  C1ORF49 MUTATED    3  1  2  0  0
  C1ORF49 WILD-TYPE 92 36 32  1  4
D129V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  C1ORF49 MUTATED     3   1   0   0
  C1ORF49 WILD-TYPE 102   4   4  10
D129V11, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  R0               3               102
  R1               1                 4
  R2               0                 4
  RX               0                10
D129V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C1ORF49 MUTATED          0        2         1         1          2          0
  C1ORF49 WILD-TYPE       37       50         9        23         31          6
                   vv
clus                STAGE IV
  C1ORF49 MUTATED          0
  C1ORF49 WILD-TYPE        9
D129V13, multiclass

Clustering(130) Variable = C9ORF64 MUTATION ANALYSIS
D130V1, survival
                   sevent
clus2                 0   1
  C9ORF64 MUTATED     3   0
  C9ORF64 WILD-TYPE 100  50
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               150 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                0                50 
$`C9ORF64 MUTATED`
TCGA-44-2656 TCGA-44-2668 TCGA-64-1676 
       19.10         8.09        56.81 

$`C9ORF64 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
             8.09              0.07 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
            56.81            120.79 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
             19.1              14.5 
[1] "8.1 - 56.8 (19.1)"  "0.1 - 120.8 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6836 
"C9ORF64 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6836 
"C9ORF64 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6836 
"C9ORF64 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D130V2, continuous
D130V3, binary
                   cls
clus                 0  1
  C9ORF64 MUTATED    0  3
  C9ORF64 WILD-TYPE 93 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF64 MUTATED      0    3
  C9ORF64 WILD-TYPE   93   76
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  FEMALE               0                93
  MALE                 3                76
D130V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C9ORF64 MUTATED                            0
  C9ORF64 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C9ORF64 MUTATED                                   0
  C9ORF64 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C9ORF64 MUTATED                                                    3
  C9ORF64 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C9ORF64 MUTATED                                            0
  C9ORF64 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C9ORF64 MUTATED                                               0
  C9ORF64 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C9ORF64 MUTATED                                0
  C9ORF64 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C9ORF64 MUTATED                                    0
  C9ORF64 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C9ORF64 MUTATED                              0                             0
  C9ORF64 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C9ORF64 MUTATED                                               0
  C9ORF64 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C9ORF64 MUTATED                              0
  C9ORF64 WILD-TYPE                            2
D130V5, multiclass
D130V6, binary
                   cls
clus                  0   1
  C9ORF64 MUTATED     0   3
  C9ORF64 WILD-TYPE  12 157
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF64 MUTATED      0    3
  C9ORF64 WILD-TYPE   12  157
     clus
vv    C9ORF64 MUTATED C9ORF64 WILD-TYPE
  NO                0                12
  YES               3               157
D130V7, continuous
D130V8, continuous
[1] "Remove cluster labels:" "C9ORF64 MUTATED"       
clus
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6147 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-55-1592        TCGA-55-1594 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5781        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6836 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
                   vv
clus                 M0  M1  MX
  C9ORF64 MUTATED     3   0   0
  C9ORF64 WILD-TYPE 135   9  23
D130V9, multiclass
    clus
vv   C9ORF64 MUTATED C9ORF64 WILD-TYPE
  M0               3               135
  M1               0                 9
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  C9ORF64 MUTATED    3  0  0  0  0
  C9ORF64 WILD-TYPE 92 37 34  1  4
D130V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  C9ORF64 MUTATED     2   0   0   0
  C9ORF64 WILD-TYPE 103   5   4  10
D130V11, multiclass
[1] "Remove cluster labels:" "C9ORF64 MUTATED"       
clus
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                2               122 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-3396        TCGA-44-3398 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-6144 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6775        TCGA-49-4486        TCGA-49-4487 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4514 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6767        TCGA-50-5051        TCGA-50-5055 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5931        TCGA-55-1592        TCGA-55-1594 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6642        TCGA-64-1677 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-5774        TCGA-64-5775 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3773        TCGA-67-4679 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4677        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6211        TCGA-75-6212 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
D130V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C9ORF64 MUTATED          1        2         0         0          0          0
  C9ORF64 WILD-TYPE       36       50        10        24         33          6
                   vv
clus                STAGE IV
  C9ORF64 MUTATED          0
  C9ORF64 WILD-TYPE        9
D130V13, multiclass

Clustering(131) Variable = LELP1 MUTATION ANALYSIS
D131V1, survival
                 sevent
clus2               0   1
  LELP1 MUTATED     1   1
  LELP1 WILD-TYPE 102  49
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             151 
  LELP1 MUTATED LELP1 WILD-TYPE 
              1              49 
$`LELP1 MUTATED`
TCGA-44-2656 TCGA-64-5775 
        19.1          0.1 

$`LELP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  LELP1 MUTATED LELP1 WILD-TYPE 
           0.10            0.07 
  LELP1 MUTATED LELP1 WILD-TYPE 
          19.10          120.79 
  LELP1 MUTATED LELP1 WILD-TYPE 
           9.60           14.93 
[1] "0.1 - 19.1 (9.6)"   "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6836 
"LELP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6836 
"LELP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6836 
"LELP1 WILD-TYPE" 
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             151 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3396 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4494      TCGA-49-4501      TCGA-49-4505 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4506      TCGA-49-4507      TCGA-49-4510      TCGA-49-4512 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6743      TCGA-49-6744 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6745      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-1592 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-1676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3774      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-91-6828      TCGA-91-6829 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
D131V2, continuous
D131V3, binary
                 cls
clus               0  1
  LELP1 MUTATED    0  3
  LELP1 WILD-TYPE 93 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LELP1 MUTATED      0    3
  LELP1 WILD-TYPE   93   76
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  FEMALE             0              93
  MALE               3              76
D131V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LELP1 MUTATED                            0                                 1
  LELP1 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LELP1 MUTATED                                                    2
  LELP1 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LELP1 MUTATED                                            0
  LELP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LELP1 MUTATED                                               0
  LELP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LELP1 MUTATED                                0
  LELP1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LELP1 MUTATED                                    0
  LELP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LELP1 MUTATED                              0                             0
  LELP1 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LELP1 MUTATED                                               0
  LELP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LELP1 MUTATED                              0
  LELP1 WILD-TYPE                            2
D131V5, multiclass
D131V6, binary
                 cls
clus                0   1
  LELP1 MUTATED     0   3
  LELP1 WILD-TYPE  12 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LELP1 MUTATED      0    3
  LELP1 WILD-TYPE   12  157
     clus
vv    LELP1 MUTATED LELP1 WILD-TYPE
  NO              0              12
  YES             3             157
D131V7, continuous
D131V8, continuous
                 vv
clus               M0  M1  MX
  LELP1 MUTATED     3   0   0
  LELP1 WILD-TYPE 135   9  23
D131V9, multiclass
    clus
vv   LELP1 MUTATED LELP1 WILD-TYPE
  M0             3             135
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  LELP1 MUTATED    3  0  0  0  0
  LELP1 WILD-TYPE 92 37 34  1  4
D131V10, multiclass
                 vv
clus               R0  R1  R2  RX
  LELP1 MUTATED     1   0   0   1
  LELP1 WILD-TYPE 104   5   4   9
D131V11, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             122 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4403      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-4434      TCGA-05-5420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2657 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-6144 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6775      TCGA-49-4486      TCGA-49-4487 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4501      TCGA-49-4505 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4506      TCGA-49-4507      TCGA-49-4510      TCGA-49-4514 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6767      TCGA-50-5051      TCGA-50-5055 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5931      TCGA-55-1592      TCGA-55-1594 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6642      TCGA-64-1676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3773      TCGA-67-4679 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6206      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
D131V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LELP1 MUTATED          0        2         0         0          1          0
  LELP1 WILD-TYPE       37       50        10        24         32          6
                 vv
clus              STAGE IV
  LELP1 MUTATED          0
  LELP1 WILD-TYPE        9
D131V13, multiclass

Clustering(132) Variable = TBX15 MUTATION ANALYSIS
D132V1, survival
                 sevent
clus2              0  1
  TBX15 MUTATED    4  6
  TBX15 WILD-TYPE 99 44
  TBX15 MUTATED TBX15 WILD-TYPE 
             10             143 
  TBX15 MUTATED TBX15 WILD-TYPE 
              6              44 
$`TBX15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4630 TCGA-38-4632 TCGA-44-2666 
        9.96        47.05        26.01        35.28        44.61         3.19 
TCGA-49-4488 TCGA-64-5779 TCGA-73-4662 TCGA-91-6829 
       28.57        16.67        29.95        41.33 

$`TBX15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  TBX15 MUTATED TBX15 WILD-TYPE 
           3.19            0.07 
  TBX15 MUTATED TBX15 WILD-TYPE 
          47.05          120.79 
  TBX15 MUTATED TBX15 WILD-TYPE 
          29.26           14.01 
[1] "3.2 - 47.0 (29.3)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
[1] "hr=" "1.4"
D132V2, continuous
D132V3, binary
                 cls
clus               0  1
  TBX15 MUTATED    5  6
  TBX15 WILD-TYPE 88 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      5    6
  TBX15 WILD-TYPE   88   73
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  FEMALE             5              88
  MALE               6              73
D132V4, continuous
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX15 MUTATED                            1                                 4
  TBX15 WILD-TYPE                          1                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX15 MUTATED                                                    4
  TBX15 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX15 MUTATED                                            0
  TBX15 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX15 MUTATED                                               1
  TBX15 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TBX15 MUTATED                                0
  TBX15 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX15 MUTATED                                    0
  TBX15 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX15 MUTATED                              0                             1
  TBX15 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX15 MUTATED                                               0
  TBX15 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TBX15 MUTATED                              0
  TBX15 WILD-TYPE                            2
D132V5, multiclass
D132V6, binary
                 cls
clus                0   1
  TBX15 MUTATED     1  10
  TBX15 WILD-TYPE  11 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      1   10
  TBX15 WILD-TYPE   11  150
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  NO              1              11
  YES            10             150
D132V7, continuous
D132V8, continuous
                 vv
clus               M0  M1  MX
  TBX15 MUTATED     8   1   2
  TBX15 WILD-TYPE 130   8  21
D132V9, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  M0             8             130
  M1             1               8
  MX             2              21
                 vv
clus              N0 N1 N2 N3 NX
  TBX15 MUTATED    5  3  2  1  0
  TBX15 WILD-TYPE 90 34 32  0  4
D132V10, multiclass
                 vv
clus              R0 R1 R2 RX
  TBX15 MUTATED    9  1  0  0
  TBX15 WILD-TYPE 96  4  4 10
D132V11, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  R0             9              96
  R1             1               4
  R2             0               4
  RX             0              10
D132V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TBX15 MUTATED          2        3         0         1          1          3
  TBX15 WILD-TYPE       35       49        10        23         32          3
                 vv
clus              STAGE IV
  TBX15 MUTATED          1
  TBX15 WILD-TYPE        8
D132V13, multiclass

Clustering(133) Variable = AOAH MUTATION ANALYSIS
D133V1, survival
                sevent
clus2             0  1
  AOAH MUTATED    4  3
  AOAH WILD-TYPE 99 47
  AOAH MUTATED AOAH WILD-TYPE 
             7            146 
  AOAH MUTATED AOAH WILD-TYPE 
             3             47 
$`AOAH MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4417 TCGA-49-4486 TCGA-49-6743 TCGA-50-6590 
        9.96        47.05        14.93        76.21        12.13        42.31 
TCGA-67-6217 
       13.87 

$`AOAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03         8.02        19.00        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 
       18.84        14.04        12.66         5.29         4.60         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  AOAH MUTATED AOAH WILD-TYPE 
          9.96           0.07 
  AOAH MUTATED AOAH WILD-TYPE 
         76.21         120.79 
  AOAH MUTATED AOAH WILD-TYPE 
        14.930         14.515 
[1] "10.0 - 76.2 (14.9)" "0.1 - 120.8 (14.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6836 
"AOAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6836 
"AOAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6836 
"AOAH WILD-TYPE" 
[1] "hr=" "1.3"
D133V2, continuous
D133V3, binary
                cls
clus              0  1
  AOAH MUTATED    6  2
  AOAH WILD-TYPE 87 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOAH MUTATED      6    2
  AOAH WILD-TYPE   87   77
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  FEMALE            6             87
  MALE              2             77
D133V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  AOAH MUTATED                            0                                 3
  AOAH WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  AOAH MUTATED                                                    3
  AOAH WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  AOAH MUTATED                                            0
  AOAH WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  AOAH MUTATED                                               0
  AOAH WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  AOAH MUTATED                                1
  AOAH WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  AOAH MUTATED                                    0
  AOAH WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  AOAH MUTATED                              0                             1
  AOAH WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  AOAH MUTATED                                               0
  AOAH WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  AOAH MUTATED                              0
  AOAH WILD-TYPE                            2
D133V5, multiclass
D133V6, binary
                cls
clus               0   1
  AOAH MUTATED     0   8
  AOAH WILD-TYPE  12 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOAH MUTATED      0    8
  AOAH WILD-TYPE   12  152
     clus
vv    AOAH MUTATED AOAH WILD-TYPE
  NO             0             12
  YES            8            152
D133V7, continuous
D133V8, continuous
                vv
clus              M0  M1  MX
  AOAH MUTATED     7   0   1
  AOAH WILD-TYPE 131   9  22
D133V9, multiclass
    clus
vv   AOAH MUTATED AOAH WILD-TYPE
  M0            7            131
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  AOAH MUTATED    3  2  2  1  0
  AOAH WILD-TYPE 92 35 32  0  4
D133V10, multiclass
                vv
clus              R0  R1  R2  RX
  AOAH MUTATED     5   0   1   0
  AOAH WILD-TYPE 100   5   3  10
D133V11, multiclass
    clus
vv   AOAH MUTATED AOAH WILD-TYPE
  R0            5            100
  R1            0              5
  R2            1              3
  RX            0             10
D133V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  AOAH MUTATED          1        2         0         1          2          2
  AOAH WILD-TYPE       36       50        10        23         31          4
                vv
clus             STAGE IV
  AOAH MUTATED          0
  AOAH WILD-TYPE        9
D133V13, multiclass

Clustering(134) Variable = STAC3 MUTATION ANALYSIS
D134V1, survival
                 sevent
clus2               0   1
  STAC3 MUTATED     1   2
  STAC3 WILD-TYPE 102  48
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             150 
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              48 
$`STAC3 MUTATED`
TCGA-05-4396 TCGA-05-4434 TCGA-91-6836 
        9.96        15.02         0.36 

$`STAC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       26.01        26.01        25.02        25.02        24.00         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  STAC3 MUTATED STAC3 WILD-TYPE 
           0.36            0.07 
  STAC3 MUTATED STAC3 WILD-TYPE 
          15.02          120.79 
  STAC3 MUTATED STAC3 WILD-TYPE 
          9.960          14.945 
[1] "0.4 - 15.0 (10.0)"  "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
[1] "hr=" "6.8"
D134V2, continuous
D134V3, binary
                 cls
clus               0  1
  STAC3 MUTATED    2  1
  STAC3 WILD-TYPE 91 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      2    1
  STAC3 WILD-TYPE   91   78
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  FEMALE             2              91
  MALE               1              78
D134V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STAC3 MUTATED                            0                                 2
  STAC3 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STAC3 MUTATED                                                    1
  STAC3 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STAC3 MUTATED                                            0
  STAC3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STAC3 MUTATED                                               0
  STAC3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  STAC3 MUTATED                                0
  STAC3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  STAC3 MUTATED                                    0
  STAC3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STAC3 MUTATED                              0                             0
  STAC3 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STAC3 MUTATED                                               0
  STAC3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  STAC3 MUTATED                              0
  STAC3 WILD-TYPE                            2
D134V5, multiclass
D134V6, binary
                 cls
clus                0   1
  STAC3 MUTATED     0   3
  STAC3 WILD-TYPE  12 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      0    3
  STAC3 WILD-TYPE   12  157
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  NO              0              12
  YES             3             157
D134V7, continuous
D134V8, continuous
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
                 vv
clus               M0  M1  MX
  STAC3 MUTATED     1   1   1
  STAC3 WILD-TYPE 137   8  22
D134V9, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  M0             1             137
  M1             1               8
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  STAC3 MUTATED    1  2  0  0  0
  STAC3 WILD-TYPE 94 35 34  1  4
D134V10, multiclass
                 vv
clus               R0  R1  R2  RX
  STAC3 MUTATED     1   0   1   0
  STAC3 WILD-TYPE 104   5   3  10
D134V11, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             122 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-3615      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-38-4627      TCGA-38-4628 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4629      TCGA-38-4630      TCGA-38-4631      TCGA-38-4632 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2655      TCGA-44-2657      TCGA-44-2659 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-6144      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6775      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4514      TCGA-49-6744 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-55-1592      TCGA-55-1594      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-64-1676      TCGA-64-1677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3773      TCGA-67-4679 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4677      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6206      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
D134V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STAC3 MUTATED          0        1         0         0          0          1
  STAC3 WILD-TYPE       37       51        10        24         33          5
                 vv
clus              STAGE IV
  STAC3 MUTATED          1
  STAC3 WILD-TYPE        8
D134V13, multiclass

Clustering(135) Variable = CD5L MUTATION ANALYSIS
D135V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    6  4
  CD5L WILD-TYPE 97 46
  CD5L MUTATED CD5L WILD-TYPE 
            10            143 
  CD5L MUTATED CD5L WILD-TYPE 
             4             46 
$`CD5L MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-49-4488 TCGA-50-5072 
       19.92         9.96        24.03        19.10        28.57         8.05 
TCGA-50-5933 TCGA-50-5941 TCGA-64-5778 TCGA-67-6215 
       77.88         9.37        30.44         5.29 

$`CD5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76        49.28         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       35.87        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CD5L MUTATED CD5L WILD-TYPE 
          5.29           0.07 
  CD5L MUTATED CD5L WILD-TYPE 
         77.88         120.79 
  CD5L MUTATED CD5L WILD-TYPE 
         19.51          14.07 
[1] "5.3 - 77.9 (19.5)"  "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
[1] "hr=" "1.1"
D135V2, continuous
D135V3, binary
                cls
clus              0  1
  CD5L MUTATED    4  8
  CD5L WILD-TYPE 89 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      4    8
  CD5L WILD-TYPE   89   71
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            4             89
  MALE              8             71
D135V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CD5L MUTATED                            0                                 4
  CD5L WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CD5L MUTATED                                                    7
  CD5L WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CD5L MUTATED                                            0
  CD5L WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CD5L MUTATED                                               1
  CD5L WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CD5L MUTATED                                0
  CD5L WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CD5L MUTATED                                    0
  CD5L WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CD5L MUTATED                              0                             0
  CD5L WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CD5L MUTATED                                               0
  CD5L WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CD5L MUTATED                              0
  CD5L WILD-TYPE                            2
D135V5, multiclass
D135V6, binary
                cls
clus               0   1
  CD5L MUTATED     1  11
  CD5L WILD-TYPE  11 149
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      1   11
  CD5L WILD-TYPE   11  149
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             1             11
  YES           11            149
D135V7, continuous
D135V8, continuous
                vv
clus              M0  M1  MX
  CD5L MUTATED    11   0   1
  CD5L WILD-TYPE 127   9  22
D135V9, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0           11            127
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  CD5L MUTATED    7  2  3  0  0
  CD5L WILD-TYPE 88 35 31  1  4
D135V10, multiclass
                vv
clus             R0 R1 R2 RX
  CD5L MUTATED    7  0  0  1
  CD5L WILD-TYPE 98  5  4  9
D135V11, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  R0            7             98
  R1            0              5
  R2            0              4
  RX            1              9
D135V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CD5L MUTATED          1        6         0         1          2          2
  CD5L WILD-TYPE       36       46        10        23         31          4
                vv
clus             STAGE IV
  CD5L MUTATED          0
  CD5L WILD-TYPE        9
D135V13, multiclass

Clustering(136) Variable = GRK5 MUTATION ANALYSIS
D136V1, survival
                sevent
clus2             0  1
  GRK5 MUTATED    4  2
  GRK5 WILD-TYPE 99 48
  GRK5 MUTATED GRK5 WILD-TYPE 
             6            147 
  GRK5 MUTATED GRK5 WILD-TYPE 
             2             48 
$`GRK5 MUTATED`
TCGA-05-4417 TCGA-38-4631 TCGA-44-2668 TCGA-44-4112 TCGA-50-5932 TCGA-64-5778 
       14.93        11.64         8.09         4.60        35.87        30.44 

$`GRK5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
        2.96         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19        10.22         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GRK5 MUTATED GRK5 WILD-TYPE 
          4.60           0.07 
  GRK5 MUTATED GRK5 WILD-TYPE 
         35.87         120.79 
  GRK5 MUTATED GRK5 WILD-TYPE 
        13.285         14.960 
[1] "4.6 - 35.9 (13.3)"  "0.1 - 120.8 (15.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6836 
"GRK5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6836 
"GRK5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6836 
"GRK5 WILD-TYPE" 
[1] "hr=" "1.3"
D136V2, continuous
D136V3, binary
                cls
clus              0  1
  GRK5 MUTATED    3  4
  GRK5 WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRK5 MUTATED      3    4
  GRK5 WILD-TYPE   90   75
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D136V4, continuous
[1] "Remove cluster labels:" "GRK5 MUTATED"          
clus
  GRK5 MUTATED GRK5 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GRK5 MUTATED                            0                                 2
  GRK5 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GRK5 MUTATED                                                    4
  GRK5 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GRK5 MUTATED                                            0
  GRK5 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GRK5 MUTATED                                               1
  GRK5 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GRK5 MUTATED                                0
  GRK5 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GRK5 MUTATED                                    0
  GRK5 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GRK5 MUTATED                              0                             0
  GRK5 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GRK5 MUTATED                                               0
  GRK5 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  GRK5 MUTATED                              0
  GRK5 WILD-TYPE                            2
D136V5, multiclass
D136V6, binary
                cls
clus               0   1
  GRK5 MUTATED     0   7
  GRK5 WILD-TYPE  12 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRK5 MUTATED      0    7
  GRK5 WILD-TYPE   12  153
     clus
vv    GRK5 MUTATED GRK5 WILD-TYPE
  NO             0             12
  YES            7            153
D136V7, continuous
D136V8, continuous
                vv
clus              M0  M1  MX
  GRK5 MUTATED     7   0   0
  GRK5 WILD-TYPE 131   9  23
D136V9, multiclass
    clus
vv   GRK5 MUTATED GRK5 WILD-TYPE
  M0            7            131
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  GRK5 MUTATED    6  1  0  0  0
  GRK5 WILD-TYPE 89 36 34  1  4
D136V10, multiclass
                vv
clus              R0  R1  R2  RX
  GRK5 MUTATED     5   0   0   1
  GRK5 WILD-TYPE 100   5   4   9
D136V11, multiclass
    clus
vv   GRK5 MUTATED GRK5 WILD-TYPE
  R0            5            100
  R1            0              5
  R2            0              4
  RX            1              9
D136V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GRK5 MUTATED          0        6         0         1          0          0
  GRK5 WILD-TYPE       37       46        10        23         33          6
                vv
clus             STAGE IV
  GRK5 MUTATED          0
  GRK5 WILD-TYPE        9
D136V13, multiclass

Clustering(137) Variable = C8ORF37 MUTATION ANALYSIS
D137V1, survival
                   sevent
clus2                 0   1
  C8ORF37 MUTATED     3   2
  C8ORF37 WILD-TYPE 100  48
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                5               148 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                2                48 
$`C8ORF37 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-50-5049 TCGA-50-6597 
        9.96        26.01        11.64        48.82        33.37 

$`C8ORF37 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 
        3.88        25.51        11.05        12.16         6.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
             9.96              0.07 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
            48.82            120.79 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
            26.01             14.50 
[1] "10.0 - 48.8 (26.0)" "0.1 - 120.8 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6836 
"C8ORF37 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6836 
"C8ORF37 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6836 
"C8ORF37 WILD-TYPE" 
[1] "hr=" "1"  
D137V2, continuous
D137V3, binary
                   cls
clus                 0  1
  C8ORF37 MUTATED    3  3
  C8ORF37 WILD-TYPE 90 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF37 MUTATED      3    3
  C8ORF37 WILD-TYPE   90   76
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  FEMALE               3                90
  MALE                 3                76
D137V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C8ORF37 MUTATED                            0
  C8ORF37 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C8ORF37 MUTATED                                   3
  C8ORF37 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C8ORF37 MUTATED                                                    3
  C8ORF37 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C8ORF37 MUTATED                                            0
  C8ORF37 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C8ORF37 MUTATED                                               0
  C8ORF37 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C8ORF37 MUTATED                                0
  C8ORF37 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C8ORF37 MUTATED                                    0
  C8ORF37 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C8ORF37 MUTATED                              0                             0
  C8ORF37 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C8ORF37 MUTATED                                               0
  C8ORF37 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C8ORF37 MUTATED                              0
  C8ORF37 WILD-TYPE                            2
D137V5, multiclass
D137V6, binary
                   cls
clus                  0   1
  C8ORF37 MUTATED     0   6
  C8ORF37 WILD-TYPE  12 154
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF37 MUTATED      0    6
  C8ORF37 WILD-TYPE   12  154
     clus
vv    C8ORF37 MUTATED C8ORF37 WILD-TYPE
  NO                0                12
  YES               6               154
D137V7, continuous
D137V8, continuous
                   vv
clus                 M0  M1  MX
  C8ORF37 MUTATED     6   0   0
  C8ORF37 WILD-TYPE 132   9  23
D137V9, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  M0               6               132
  M1               0                 9
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  C8ORF37 MUTATED    4  2  0  0  0
  C8ORF37 WILD-TYPE 91 35 34  1  4
D137V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  C8ORF37 MUTATED     3   0   0   1
  C8ORF37 WILD-TYPE 102   5   4   9
D137V11, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  R0               3               102
  R1               0                 5
  R2               0                 4
  RX               1                 9
D137V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C8ORF37 MUTATED          1        3         0         1          0          1
  C8ORF37 WILD-TYPE       36       49        10        23         33          5
                   vv
clus                STAGE IV
  C8ORF37 MUTATED          0
  C8ORF37 WILD-TYPE        9
D137V13, multiclass

Clustering(138) Variable = PTH MUTATION ANALYSIS
D138V1, survival
               sevent
clus2             0   1
  PTH MUTATED     1   2
  PTH WILD-TYPE 102  48
  PTH MUTATED PTH WILD-TYPE 
            3           150 
  PTH MUTATED PTH WILD-TYPE 
            2            48 
$`PTH MUTATED`
TCGA-05-4415 TCGA-44-2657 TCGA-49-4505 
        2.96        13.15        14.07 

$`PTH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  PTH MUTATED PTH WILD-TYPE 
         2.96          0.07 
  PTH MUTATED PTH WILD-TYPE 
        14.07        120.79 
  PTH MUTATED PTH WILD-TYPE 
        13.15         14.99 
[1] "3.0 - 14.1 (13.2)"  "0.1 - 120.8 (15.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
[1] "hr=" "6"  
D138V2, continuous
D138V3, binary
               cls
clus             0  1
  PTH MUTATED    2  1
  PTH WILD-TYPE 91 78
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      2    1
  PTH WILD-TYPE   91   78
        clus
vv       PTH MUTATED PTH WILD-TYPE
  FEMALE           2            91
  MALE             1            78
D138V4, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PTH MUTATED                            0                                 1
  PTH WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTH MUTATED                                                    2
  PTH WILD-TYPE                                                112
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PTH MUTATED                                            0
  PTH WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PTH MUTATED                                               0
  PTH WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  PTH MUTATED                                0
  PTH WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  PTH MUTATED                                    0                            0
  PTH WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  PTH MUTATED                               0
  PTH WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PTH MUTATED                                               0
  PTH WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  PTH MUTATED                              0
  PTH WILD-TYPE                            2
D138V5, multiclass
D138V6, binary
               cls
clus              0   1
  PTH MUTATED     0   3
  PTH WILD-TYPE  12 157
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      0    3
  PTH WILD-TYPE   12  157
     clus
vv    PTH MUTATED PTH WILD-TYPE
  NO            0            12
  YES           3           157
D138V7, continuous
D138V8, continuous
               vv
clus             M0  M1  MX
  PTH MUTATED     3   0   0
  PTH WILD-TYPE 135   9  23
D138V9, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  M0           3           135
  M1           0             9
  MX           0            23
               vv
clus            N0 N1 N2 N3 NX
  PTH MUTATED    0  1  1  0  1
  PTH WILD-TYPE 95 36 33  1  3
D138V10, multiclass
               vv
clus             R0  R1  R2  RX
  PTH MUTATED     3   0   0   0
  PTH WILD-TYPE 102   5   4  10
D138V11, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  R0           3           102
  R1           0             5
  R2           0             4
  RX           0            10
D138V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PTH MUTATED          0        1         0         1          0          1
  PTH WILD-TYPE       37       51        10        23         33          5
               vv
clus            STAGE IV
  PTH MUTATED          0
  PTH WILD-TYPE        9
D138V13, multiclass

Clustering(139) Variable = NAALAD2 MUTATION ANALYSIS
D139V1, survival
                   sevent
clus2                0  1
  NAALAD2 MUTATED    7  1
  NAALAD2 WILD-TYPE 96 49
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                8               145 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                49 
$`NAALAD2 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-44-2659 TCGA-44-5643 
       19.92        47.05        30.02        26.01        17.39         3.48 
TCGA-50-5066 TCGA-50-6595 
        9.76         6.21 

$`NAALAD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
        8.98        29.95        12.00        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
             3.48              0.07 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            47.05            120.79 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
           18.655            14.070 
[1] "3.5 - 47.0 (18.7)"  "0.1 - 120.8 (14.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6836 
"NAALAD2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6836 
"NAALAD2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6836 
"NAALAD2 WILD-TYPE" 
[1] "hr=" "2.4"
D139V2, continuous
D139V3, binary
                   cls
clus                 0  1
  NAALAD2 MUTATED    4  5
  NAALAD2 WILD-TYPE 89 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      4    5
  NAALAD2 WILD-TYPE   89   74
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  FEMALE               4                89
  MALE                 5                74
D139V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  NAALAD2 MUTATED                            0
  NAALAD2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  NAALAD2 MUTATED                                   6
  NAALAD2 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NAALAD2 MUTATED                                                    3
  NAALAD2 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NAALAD2 MUTATED                                            0
  NAALAD2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NAALAD2 MUTATED                                               0
  NAALAD2 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  NAALAD2 MUTATED                                0
  NAALAD2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  NAALAD2 MUTATED                                    0
  NAALAD2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NAALAD2 MUTATED                              0                             0
  NAALAD2 WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NAALAD2 MUTATED                                               0
  NAALAD2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  NAALAD2 MUTATED                              0
  NAALAD2 WILD-TYPE                            2
D139V5, multiclass
D139V6, binary
                   cls
clus                  0   1
  NAALAD2 MUTATED     1   8
  NAALAD2 WILD-TYPE  11 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      1    8
  NAALAD2 WILD-TYPE   11  152
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  NO                1                11
  YES               8               152
D139V7, continuous
D139V8, continuous
                   vv
clus                 M0  M1  MX
  NAALAD2 MUTATED     9   0   0
  NAALAD2 WILD-TYPE 129   9  23
D139V9, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  M0               9               129
  M1               0                 9
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  NAALAD2 MUTATED    3  3  2  1  0
  NAALAD2 WILD-TYPE 92 34 32  0  4
D139V10, multiclass
                   vv
clus                R0 R1 R2 RX
  NAALAD2 MUTATED    6  1  0  0
  NAALAD2 WILD-TYPE 99  4  4 10
D139V11, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  R0               6                99
  R1               1                 4
  R2               0                 4
  RX               0                10
D139V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NAALAD2 MUTATED          0        2         1         3          2          1
  NAALAD2 WILD-TYPE       37       50         9        21         31          5
                   vv
clus                STAGE IV
  NAALAD2 MUTATED          0
  NAALAD2 WILD-TYPE        9
D139V13, multiclass

Clustering(140) Variable = TAAR5 MUTATION ANALYSIS
D140V1, survival
                 sevent
clus2              0  1
  TAAR5 MUTATED    6  1
  TAAR5 WILD-TYPE 97 49
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             146 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              1              49 
$`TAAR5 MUTATED`
TCGA-05-4403 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-44-6774 TCGA-73-4658 
       19.00         5.95         8.68        97.74         5.42        52.57 
TCGA-73-4666 
       20.28 

$`TAAR5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05         8.02        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        7.36       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
       13.87         2.01        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  TAAR5 MUTATED TAAR5 WILD-TYPE 
           5.42            0.07 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
          97.74          120.79 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
           19.0            14.5 
[1] "5.4 - 97.7 (19.0)"  "0.1 - 120.8 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "TAAR5 MUTATED"   "TAAR5 MUTATED"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6836 
"TAAR5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "TAAR5 MUTATED"   "TAAR5 MUTATED"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6836 
"TAAR5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "TAAR5 MUTATED"   "TAAR5 MUTATED"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6836 
"TAAR5 WILD-TYPE" 
[1] "hr=" "3.9"
D140V2, continuous
D140V3, binary
                 cls
clus               0  1
  TAAR5 MUTATED    4  3
  TAAR5 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR5 MUTATED      4    3
  TAAR5 WILD-TYPE   89   76
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D140V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TAAR5 MUTATED                            0                                 1
  TAAR5 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TAAR5 MUTATED                                                    6
  TAAR5 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TAAR5 MUTATED                                            0
  TAAR5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TAAR5 MUTATED                                               0
  TAAR5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TAAR5 MUTATED                                0
  TAAR5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TAAR5 MUTATED                                    0
  TAAR5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TAAR5 MUTATED                              0                             0
  TAAR5 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TAAR5 MUTATED                                               0
  TAAR5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TAAR5 MUTATED                              0
  TAAR5 WILD-TYPE                            2
D140V5, multiclass
D140V6, binary
                 cls
clus                0   1
  TAAR5 MUTATED     1   6
  TAAR5 WILD-TYPE  11 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR5 MUTATED      1    6
  TAAR5 WILD-TYPE   11  154
     clus
vv    TAAR5 MUTATED TAAR5 WILD-TYPE
  NO              1              11
  YES             6             154
D140V7, continuous
D140V8, continuous
                 vv
clus               M0  M1  MX
  TAAR5 MUTATED     6   1   0
  TAAR5 WILD-TYPE 132   8  23
D140V9, multiclass
    clus
vv   TAAR5 MUTATED TAAR5 WILD-TYPE
  M0             6             132
  M1             1               8
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  TAAR5 MUTATED    5  0  2  0  0
  TAAR5 WILD-TYPE 90 37 32  1  4
D140V10, multiclass
                 vv
clus              R0 R1 R2 RX
  TAAR5 MUTATED    6  0  0  0
  TAAR5 WILD-TYPE 99  5  4 10
D140V11, multiclass
    clus
vv   TAAR5 MUTATED TAAR5 WILD-TYPE
  R0             6              99
  R1             0               5
  R2             0               4
  RX             0              10
D140V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TAAR5 MUTATED          1        3         0         0          2          0
  TAAR5 WILD-TYPE       36       49        10        24         31          6
                 vv
clus              STAGE IV
  TAAR5 MUTATED          1
  TAAR5 WILD-TYPE        8
D140V13, multiclass

Clustering(141) Variable = TRPC1 MUTATION ANALYSIS
D141V1, survival
                 sevent
clus2              0  1
  TRPC1 MUTATED    4  1
  TRPC1 WILD-TYPE 99 49
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              5             148 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              1              49 
$`TRPC1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-50-5049 TCGA-55-1596 TCGA-64-5781 
       14.01         9.96        48.82        45.17        39.52 

$`TRPC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TRPC1 MUTATED TRPC1 WILD-TYPE 
           9.96            0.07 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
          48.82          120.79 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
          39.52           14.50 
[1] "10.0 - 48.8 (39.5)" "0.1 - 120.8 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6836 
"TRPC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6836 
"TRPC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6836 
"TRPC1 WILD-TYPE" 
[1] "hr=" "2.8"
D141V2, continuous
D141V3, binary
                 cls
clus               0  1
  TRPC1 MUTATED    3  4
  TRPC1 WILD-TYPE 90 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC1 MUTATED      3    4
  TRPC1 WILD-TYPE   90   75
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D141V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TRPC1 MUTATED                            0                                 3
  TRPC1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRPC1 MUTATED                                                    3
  TRPC1 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TRPC1 MUTATED                                            0
  TRPC1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TRPC1 MUTATED                                               0
  TRPC1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TRPC1 MUTATED                                0
  TRPC1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TRPC1 MUTATED                                    0
  TRPC1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TRPC1 MUTATED                              0                             1
  TRPC1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TRPC1 MUTATED                                               0
  TRPC1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TRPC1 MUTATED                              0
  TRPC1 WILD-TYPE                            2
D141V5, multiclass
D141V6, binary
                 cls
clus                0   1
  TRPC1 MUTATED     0   7
  TRPC1 WILD-TYPE  12 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC1 MUTATED      0    7
  TRPC1 WILD-TYPE   12  153
     clus
vv    TRPC1 MUTATED TRPC1 WILD-TYPE
  NO              0              12
  YES             7             153
D141V7, continuous
D141V8, continuous
                 vv
clus               M0  M1  MX
  TRPC1 MUTATED     7   0   0
  TRPC1 WILD-TYPE 131   9  23
D141V9, multiclass
    clus
vv   TRPC1 MUTATED TRPC1 WILD-TYPE
  M0             7             131
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  TRPC1 MUTATED    3  2  2  0  0
  TRPC1 WILD-TYPE 92 35 32  1  4
D141V10, multiclass
                 vv
clus               R0  R1  R2  RX
  TRPC1 MUTATED     4   0   1   1
  TRPC1 WILD-TYPE 101   5   3   9
D141V11, multiclass
    clus
vv   TRPC1 MUTATED TRPC1 WILD-TYPE
  R0             4             101
  R1             0               5
  R2             1               3
  RX             1               9
D141V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TRPC1 MUTATED          1        2         0         1          2          1
  TRPC1 WILD-TYPE       36       50        10        23         31          5
                 vv
clus              STAGE IV
  TRPC1 MUTATED          0
  TRPC1 WILD-TYPE        9
D141V13, multiclass

Clustering(142) Variable = IL18RAP MUTATION ANALYSIS
D142V1, survival
                   sevent
clus2                 0   1
  IL18RAP MUTATED     1   4
  IL18RAP WILD-TYPE 102  46
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               148 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                4                46 
$`IL18RAP MUTATED`
TCGA-05-4397 TCGA-38-4632 TCGA-44-2668 TCGA-50-5068 TCGA-50-5931 
       24.03        44.61         8.09        49.28         8.78 

$`IL18RAP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       71.47        48.82        14.96        25.81         9.76         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  IL18RAP MUTATED IL18RAP WILD-TYPE 
             8.09              0.07 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
            49.28            120.79 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
            24.03             14.50 
[1] "8.1 - 49.3 (24.0)"  "0.1 - 120.8 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6836 
"IL18RAP WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6836 
"IL18RAP WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6836 
"IL18RAP WILD-TYPE" 
[1] "hr=" "1.8"
D142V2, continuous
D142V3, binary
                   cls
clus                 0  1
  IL18RAP MUTATED    2  3
  IL18RAP WILD-TYPE 91 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IL18RAP MUTATED      2    3
  IL18RAP WILD-TYPE   91   76
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  FEMALE               2                91
  MALE                 3                76
D142V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  IL18RAP MUTATED                            0
  IL18RAP WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  IL18RAP MUTATED                                   1
  IL18RAP WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IL18RAP MUTATED                                                    4
  IL18RAP WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IL18RAP MUTATED                                            0
  IL18RAP WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IL18RAP MUTATED                                               0
  IL18RAP WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  IL18RAP MUTATED                                0
  IL18RAP WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  IL18RAP MUTATED                                    0
  IL18RAP WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IL18RAP MUTATED                              0                             0
  IL18RAP WILD-TYPE                            2                             5
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IL18RAP MUTATED                                               0
  IL18RAP WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  IL18RAP MUTATED                              0
  IL18RAP WILD-TYPE                            2
D142V5, multiclass
D142V6, binary
                   cls
clus                  0   1
  IL18RAP MUTATED     0   5
  IL18RAP WILD-TYPE  12 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IL18RAP MUTATED      0    5
  IL18RAP WILD-TYPE   12  155
     clus
vv    IL18RAP MUTATED IL18RAP WILD-TYPE
  NO                0                12
  YES               5               155
D142V7, continuous
D142V8, continuous
[1] "Remove cluster labels:" "IL18RAP MUTATED"       
clus
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                1                67 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2662 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2666        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6829        TCGA-91-6836 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
                   vv
clus                 M0  M1  MX
  IL18RAP MUTATED     3   1   1
  IL18RAP WILD-TYPE 135   8  22
D142V9, multiclass
    clus
vv   IL18RAP MUTATED IL18RAP WILD-TYPE
  M0               3               135
  M1               1                 8
  MX               1                22
                   vv
clus                N0 N1 N2 N3 NX
  IL18RAP MUTATED    2  3  0  0  0
  IL18RAP WILD-TYPE 93 34 34  1  4
D142V10, multiclass
                   vv
clus                 R0  R1  R2  RX
  IL18RAP MUTATED     4   0   0   0
  IL18RAP WILD-TYPE 101   5   4  10
D142V11, multiclass
    clus
vv   IL18RAP MUTATED IL18RAP WILD-TYPE
  R0               4               101
  R1               0                 5
  R2               0                 4
  RX               0                10
D142V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  IL18RAP MUTATED          0        2         0         2          0          0
  IL18RAP WILD-TYPE       37       50        10        22         33          6
                   vv
clus                STAGE IV
  IL18RAP MUTATED          1
  IL18RAP WILD-TYPE        8
D142V13, multiclass

Clustering(143) Variable = C2ORF39 MUTATION ANALYSIS
D143V1, survival
                   sevent
clus2                0  1
  C2ORF39 MUTATED    4  2
  C2ORF39 WILD-TYPE 99 48
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                6               147 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                2                48 
$`C2ORF39 MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-44-2655 TCGA-44-3918 TCGA-55-1592 TCGA-64-1677 
       19.92        45.01        18.87         6.44        23.05        20.65 

$`C2ORF39 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
       28.37        35.28        11.64        44.61         5.19        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
             6.44              0.07 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
            45.01            120.79 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
           20.285            14.040 
[1] "6.4 - 45.0 (20.3)"  "0.1 - 120.8 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF39 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF39 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF39 WILD-TYPE" 
[1] "hr=" "1.1"
D143V2, continuous
D143V3, binary
                   cls
clus                 0  1
  C2ORF39 MUTATED    5  3
  C2ORF39 WILD-TYPE 88 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF39 MUTATED      5    3
  C2ORF39 WILD-TYPE   88   76
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D143V4, continuous
[1] "Remove cluster labels:" "C2ORF39 MUTATED"       
clus
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-5778 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C2ORF39 MUTATED                            0
  C2ORF39 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C2ORF39 MUTATED                                   2
  C2ORF39 WILD-TYPE                                37
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C2ORF39 MUTATED                                                    5
  C2ORF39 WILD-TYPE                                                109
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C2ORF39 MUTATED                                            0
  C2ORF39 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C2ORF39 MUTATED                                               0
  C2ORF39 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C2ORF39 MUTATED                                0
  C2ORF39 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C2ORF39 MUTATED                                    0
  C2ORF39 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C2ORF39 MUTATED                              0                             1
  C2ORF39 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C2ORF39 MUTATED                                               0
  C2ORF39 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C2ORF39 MUTATED                              0
  C2ORF39 WILD-TYPE                            2
D143V5, multiclass
D143V6, binary
                   cls
clus                  0   1
  C2ORF39 MUTATED     0   8
  C2ORF39 WILD-TYPE  12 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF39 MUTATED      0    8
  C2ORF39 WILD-TYPE   12  152
     clus
vv    C2ORF39 MUTATED C2ORF39 WILD-TYPE
  NO                0                12
  YES               8               152
D143V7, continuous
D143V8, continuous
                   vv
clus                 M0  M1  MX
  C2ORF39 MUTATED     8   0   0
  C2ORF39 WILD-TYPE 130   9  23
D143V9, multiclass
    clus
vv   C2ORF39 MUTATED C2ORF39 WILD-TYPE
  M0               8               130
  M1               0                 9
  MX               0                23
                   vv
clus                N0 N1 N2 N3 NX
  C2ORF39 MUTATED    6  0  2  0  0
  C2ORF39 WILD-TYPE 89 37 32  1  4
D143V10, multiclass
                   vv
clus                R0 R1 R2 RX
  C2ORF39 MUTATED    7  0  1  0
  C2ORF39 WILD-TYPE 98  5  3 10
D143V11, multiclass
    clus
vv   C2ORF39 MUTATED C2ORF39 WILD-TYPE
  R0               7                98
  R1               0                 5
  R2               1                 3
  RX               0                10
D143V12, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C2ORF39 MUTATED          4        2         0         0          2          0
  C2ORF39 WILD-TYPE       33       50        10        24         31          6
                   vv
clus                STAGE IV
  C2ORF39 MUTATED          0
  C2ORF39 WILD-TYPE        9
D143V13, multiclass

Clustering(144) Variable = ARID2 MUTATION ANALYSIS
D144V1, survival
                 sevent
clus2              0  1
  ARID2 MUTATED    6  6
  ARID2 WILD-TYPE 97 44
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             141 
  ARID2 MUTATED ARID2 WILD-TYPE 
              6              44 
$`ARID2 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-35-3615 TCGA-38-4631 TCGA-44-2657 TCGA-44-3398 
        9.96        24.03         0.46        11.64        13.15         8.32 
TCGA-50-5931 TCGA-50-6592 TCGA-64-1680 TCGA-67-6217 TCGA-73-4658 TCGA-73-4675 
        8.78        25.51        37.02        13.87        52.57         1.32 

$`ARID2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        4.96         2.96         0.99         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       35.28        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        5.29         4.60         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         0.46         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ARID2 MUTATED ARID2 WILD-TYPE 
           0.46            0.07 
  ARID2 MUTATED ARID2 WILD-TYPE 
          52.57          120.79 
  ARID2 MUTATED ARID2 WILD-TYPE 
         12.395          15.020 
[1] "0.5 - 52.6 (12.4)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6836 
"ARID2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6836 
"ARID2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6836 
"ARID2 WILD-TYPE" 
[1] "hr=" "2"  
D144V2, continuous
D144V3, binary
                 cls
clus               0  1
  ARID2 MUTATED    7  5
  ARID2 WILD-TYPE 86 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      7    5
  ARID2 WILD-TYPE   86   74
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D144V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ARID2 MUTATED                            0                                 3
  ARID2 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ARID2 MUTATED                                                    9
  ARID2 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ARID2 MUTATED                                            0
  ARID2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ARID2 MUTATED                                               0
  ARID2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ARID2 MUTATED                                0
  ARID2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ARID2 MUTATED                                    0
  ARID2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ARID2 MUTATED                              0                             0
  ARID2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ARID2 MUTATED                                               0
  ARID2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ARID2 MUTATED                              0
  ARID2 WILD-TYPE                            2
D144V5, multiclass
D144V6, binary
                 cls
clus                0   1
  ARID2 MUTATED     1  11
  ARID2 WILD-TYPE  11 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      1   11
  ARID2 WILD-TYPE   11  149
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  NO              1              11
  YES            11             149
D144V7, continuous
D144V8, continuous
                 vv
clus               M0  M1  MX
  ARID2 MUTATED    11   1   0
  ARID2 WILD-TYPE 127   8  23
D144V9, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  M0            11             127
  M1             1               8
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  ARID2 MUTATED    6  4  1  0  1
  ARID2 WILD-TYPE 89 33 33  1  3
D144V10, multiclass
                 vv
clus              R0 R1 R2 RX
  ARID2 MUTATED   10  0  0  1
  ARID2 WILD-TYPE 95  5  4  9
D144V11, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  R0            10              95
  R1             0               5
  R2             0               4
  RX             1               9
D144V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ARID2 MUTATED          1        6         0         2          1          1
  ARID2 WILD-TYPE       36       46        10        22         32          5
                 vv
clus              STAGE IV
  ARID2 MUTATED          1
  ARID2 WILD-TYPE        8
D144V13, multiclass

Clustering(145) Variable = SPEG MUTATION ANALYSIS
D145V1, survival
                sevent
clus2             0  1
  SPEG MUTATED   10  4
  SPEG WILD-TYPE 93 46
  SPEG MUTATED SPEG WILD-TYPE 
            14            139 
  SPEG MUTATED SPEG WILD-TYPE 
             4             46 
$`SPEG MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-35-4123 TCGA-38-4626 TCGA-44-2656 TCGA-49-4486 
       19.92        26.01         5.95       120.79        19.10        76.21 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5049 TCGA-55-1592 TCGA-64-5775 
       12.13        12.99         4.93        48.82        23.05         0.10 
TCGA-64-5781 TCGA-91-6829 
       39.52        41.33 

$`SPEG WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        97.74        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 
        2.70        63.72        32.45        36.49        16.41        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-50-5044 
        8.81        29.46        29.75        43.20        15.02        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  SPEG MUTATED SPEG WILD-TYPE 
          0.10           0.07 
  SPEG MUTATED SPEG WILD-TYPE 
        120.79          97.74 
  SPEG MUTATED SPEG WILD-TYPE 
        21.485         14.040 
[1] "0.1 - 120.8 (21.5)" "0.1 - 97.7 (14.0)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "SPEG MUTATED"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-91-6836 
"SPEG WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "SPEG MUTATED"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-91-6836 
"SPEG WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "SPEG MUTATED"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-91-6836 
"SPEG WILD-TYPE" 
[1] "hr=" "1.9"
D145V2, continuous
D145V3, binary
                cls
clus              0  1
  SPEG MUTATED    6 10
  SPEG WILD-TYPE 87 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEG MUTATED      6   10
  SPEG WILD-TYPE   87   69
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  FEMALE            6             87
  MALE             10             69
D145V4, continuous
[1] "Remove cluster labels:" "SPEG MUTATED"          
clus
  SPEG MUTATED SPEG WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPEG MUTATED                            0                                 5
  SPEG WILD-TYPE                          2                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPEG MUTATED                                                    7
  SPEG WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPEG MUTATED                                            0
  SPEG WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPEG MUTATED                                               1
  SPEG WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SPEG MUTATED                                1
  SPEG WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SPEG MUTATED                                    0
  SPEG WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPEG MUTATED                              0                             2
  SPEG WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPEG MUTATED                                               0
  SPEG WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SPEG MUTATED                              0
  SPEG WILD-TYPE                            2
D145V5, multiclass
D145V6, binary
                cls
clus               0   1
  SPEG MUTATED     0  16
  SPEG WILD-TYPE  12 144
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEG MUTATED      0   16
  SPEG WILD-TYPE   12  144
     clus
vv    SPEG MUTATED SPEG WILD-TYPE
  NO             0             12
  YES           16            144
D145V7, continuous
D145V8, continuous
                vv
clus              M0  M1  MX
  SPEG MUTATED    12   0   4
  SPEG WILD-TYPE 126   9  19
D145V9, multiclass
    clus
vv   SPEG MUTATED SPEG WILD-TYPE
  M0           12            126
  M1            0              9
  MX            4             19
                vv
clus             N0 N1 N2 N3 NX
  SPEG MUTATED   10  3  3  0  0
  SPEG WILD-TYPE 85 34 31  1  4
D145V10, multiclass
                vv
clus             R0 R1 R2 RX
  SPEG MUTATED    9  0  1  1
  SPEG WILD-TYPE 96  5  3  9
D145V11, multiclass
    clus
vv   SPEG MUTATED SPEG WILD-TYPE
  R0            9             96
  R1            0              5
  R2            1              3
  RX            1              9
D145V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SPEG MUTATED          4        4         3         1          4          0
  SPEG WILD-TYPE       33       48         7        23         29          6
                vv
clus             STAGE IV
  SPEG MUTATED          0
  SPEG WILD-TYPE        9
D145V13, multiclass

Clustering(146) Variable = OR13G1 MUTATION ANALYSIS
D146V1, survival
                  sevent
clus2               0  1
  OR13G1 MUTATED    7  2
  OR13G1 WILD-TYPE 96 48
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              144 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               2               48 
$`OR13G1 MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-38-4625 TCGA-49-4514 TCGA-64-5778 TCGA-64-5781 
       19.92        26.01        97.74        43.20        30.44        39.52 
TCGA-67-3771 TCGA-73-4677 TCGA-91-6829 
       20.02         1.25        41.33 

$`OR13G1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       83.84         0.10        16.67         7.33         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.29         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.32         4.01         1.22         1.28         1.15         0.36 

  OR13G1 MUTATED OR13G1 WILD-TYPE 
            1.25             0.07 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           97.74           120.79 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           30.44            13.94 
[1] "1.2 - 97.7 (30.4)"  "0.1 - 120.8 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
[1] "hr=" "2.8"
D146V2, continuous
D146V3, binary
                  cls
clus                0  1
  OR13G1 MUTATED    5  4
  OR13G1 WILD-TYPE 88 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      5    4
  OR13G1 WILD-TYPE   88   75
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  FEMALE              5               88
  MALE                4               75
D146V4, continuous
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR13G1 MUTATED                            0                                 3
  OR13G1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR13G1 MUTATED                                                    3
  OR13G1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR13G1 MUTATED                                            0
  OR13G1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR13G1 MUTATED                                               2
  OR13G1 WILD-TYPE                                             0
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR13G1 MUTATED                                0
  OR13G1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR13G1 MUTATED                                    0
  OR13G1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR13G1 MUTATED                              0                             1
  OR13G1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR13G1 MUTATED                                               0
  OR13G1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR13G1 MUTATED                              0
  OR13G1 WILD-TYPE                            2
D146V5, multiclass
D146V6, binary
                  cls
clus                 0   1
  OR13G1 MUTATED     0   9
  OR13G1 WILD-TYPE  12 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      0    9
  OR13G1 WILD-TYPE   12  151
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  NO               0               12
  YES              9              151
D146V7, continuous
D146V8, continuous
                  vv
clus                M0  M1  MX
  OR13G1 MUTATED     8   0   1
  OR13G1 WILD-TYPE 130   9  22
D146V9, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  M0              8              130
  M1              0                9
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  OR13G1 MUTATED    8  1  0  0  0
  OR13G1 WILD-TYPE 87 36 34  1  4
D146V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR13G1 MUTATED    7  0  0  1
  OR13G1 WILD-TYPE 98  5  4  9
D146V11, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  R0              7               98
  R1              0                5
  R2              0                4
  RX              1                9
D146V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR13G1 MUTATED          3        5         0         1          0          0
  OR13G1 WILD-TYPE       34       47        10        23         33          6
                  vv
clus               STAGE IV
  OR13G1 MUTATED          0
  OR13G1 WILD-TYPE        9
D146V13, multiclass

Clustering(147) Variable = NHEDC1 MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2               0  1
  NHEDC1 MUTATED    6  2
  NHEDC1 WILD-TYPE 97 48
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               8              145 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               2               48 
$`NHEDC1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-38-4632 TCGA-44-3918 
       37.02         9.96        29.95       120.79        44.61         6.44 
TCGA-49-6742 TCGA-64-5781 
       15.02        39.52 

$`NHEDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        97.74        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        43.20        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.29         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
            6.44             0.07 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          120.79            97.74 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          33.485           14.040 
[1] "6.4 - 120.8 (33.5)" "0.1 - 97.7 (14.0)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
[1] "hr=" "2.5"
D147V2, continuous
D147V3, binary
                  cls
clus                0  1
  NHEDC1 MUTATED    4  5
  NHEDC1 WILD-TYPE 89 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      4    5
  NHEDC1 WILD-TYPE   89   74
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D147V4, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NHEDC1 MUTATED                            0                                 4
  NHEDC1 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NHEDC1 MUTATED                                                    3
  NHEDC1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NHEDC1 MUTATED                                            0
  NHEDC1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NHEDC1 MUTATED                                               0
  NHEDC1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  NHEDC1 MUTATED                                0
  NHEDC1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  NHEDC1 MUTATED                                    0
  NHEDC1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NHEDC1 MUTATED                              0                             0
  NHEDC1 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NHEDC1 MUTATED                                               1
  NHEDC1 WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  NHEDC1 MUTATED                              1
  NHEDC1 WILD-TYPE                            1
D147V5, multiclass
D147V6, binary
                  cls
clus                 0   1
  NHEDC1 MUTATED     0   9
  NHEDC1 WILD-TYPE  12 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      0    9
  NHEDC1 WILD-TYPE   12  151
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  NO               0               12
  YES              9              151
D147V7, continuous
D147V8, continuous
                  vv
clus                M0  M1  MX
  NHEDC1 MUTATED     7   1   1
  NHEDC1 WILD-TYPE 131   8  22
D147V9, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  M0              7              131
  M1              1                8
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  NHEDC1 MUTATED    6  3  0  0  0
  NHEDC1 WILD-TYPE 89 34 34  1  4
D147V10, multiclass
                  vv
clus               R0 R1 R2 RX
  NHEDC1 MUTATED    8  0  0  0
  NHEDC1 WILD-TYPE 97  5  4 10
D147V11, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  R0              8               97
  R1              0                5
  R2              0                4
  RX              0               10
D147V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NHEDC1 MUTATED          1        4         1         1          0          1
  NHEDC1 WILD-TYPE       36       48         9        23         33          5
                  vv
clus               STAGE IV
  NHEDC1 MUTATED          1
  NHEDC1 WILD-TYPE        8
D147V13, multiclass

Clustering(148) Variable = HAX1 MUTATION ANALYSIS
D148V1, survival
                sevent
clus2              0   1
  HAX1 MUTATED     3   1
  HAX1 WILD-TYPE 100  49
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            149 
  HAX1 MUTATED HAX1 WILD-TYPE 
             1             49 
$`HAX1 MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-44-5645 TCGA-91-6836 
        9.96        97.74         6.84         0.36 

$`HAX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  HAX1 MUTATED HAX1 WILD-TYPE 
          0.36           0.07 
  HAX1 MUTATED HAX1 WILD-TYPE 
         97.74         120.79 
  HAX1 MUTATED HAX1 WILD-TYPE 
          8.40          14.96 
[1] "0.4 - 97.7 (8.4)"   "0.1 - 120.8 (15.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6836 
  "HAX1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6836 
  "HAX1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6836 
  "HAX1 MUTATED" 
[1] "hr=" "2.1"
D148V2, continuous
D148V3, binary
                cls
clus              0  1
  HAX1 MUTATED    3  1
  HAX1 WILD-TYPE 90 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      3    1
  HAX1 WILD-TYPE   90   78
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D148V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HAX1 MUTATED                            0                                 1
  HAX1 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HAX1 MUTATED                                                    3
  HAX1 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HAX1 MUTATED                                            0
  HAX1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HAX1 MUTATED                                               0
  HAX1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  HAX1 MUTATED                                0
  HAX1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  HAX1 MUTATED                                    0
  HAX1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HAX1 MUTATED                              0                             0
  HAX1 WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HAX1 MUTATED                                               0
  HAX1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  HAX1 MUTATED                              0
  HAX1 WILD-TYPE                            2
D148V5, multiclass
D148V6, binary
                cls
clus               0   1
  HAX1 MUTATED     0   4
  HAX1 WILD-TYPE  12 156
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      0    4
  HAX1 WILD-TYPE   12  156
     clus
vv    HAX1 MUTATED HAX1 WILD-TYPE
  NO             0             12
  YES            4            156
D148V7, continuous
D148V8, continuous
                vv
clus              M0  M1  MX
  HAX1 MUTATED     2   0   1
  HAX1 WILD-TYPE 136   9  22
D148V9, multiclass
    clus
vv   HAX1 MUTATED HAX1 WILD-TYPE
  M0            2            136
  M1            0              9
  MX            1             22
                vv
clus             N0 N1 N2 N3 NX
  HAX1 MUTATED    2  1  0  0  0
  HAX1 WILD-TYPE 93 36 34  1  4
D148V10, multiclass
                vv
clus              R0  R1  R2  RX
  HAX1 MUTATED     2   0   0   0
  HAX1 WILD-TYPE 103   5   4  10
D148V11, multiclass
[1] "Remove cluster labels:" "HAX1 MUTATED"          
clus
  HAX1 MUTATED HAX1 WILD-TYPE 
             2            122 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4395 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4403 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4417 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4422     TCGA-05-4424 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4426     TCGA-05-4427     TCGA-05-4430 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4432     TCGA-05-4433     TCGA-05-4434     TCGA-05-5420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-3615     TCGA-35-4122     TCGA-35-4123 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4626     TCGA-38-4627     TCGA-38-4628 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4629     TCGA-38-4630     TCGA-38-4631     TCGA-38-4632 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-2655     TCGA-44-2657     TCGA-44-2659 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-6144     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6775     TCGA-49-4486     TCGA-49-4487     TCGA-49-4488 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4501     TCGA-49-4505     TCGA-49-4506 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4507     TCGA-49-4510     TCGA-49-4514     TCGA-49-6744 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6767     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-55-1592     TCGA-55-1594     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6642     TCGA-64-1676     TCGA-64-1677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-64-5774     TCGA-64-5775 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3770     TCGA-67-3771     TCGA-67-3773     TCGA-67-4679 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
D148V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HAX1 MUTATED          1        2         0         0          0          1
  HAX1 WILD-TYPE       36       50        10        24         33          5
                vv
clus             STAGE IV
  HAX1 MUTATED          0
  HAX1 WILD-TYPE        9
D148V13, multiclass

Clustering(149) Variable = ATM MUTATION ANALYSIS
D149V1, survival
               sevent
clus2            0  1
  ATM MUTATED    8  6
  ATM WILD-TYPE 95 44
  ATM MUTATED ATM WILD-TYPE 
           14           139 
  ATM MUTATED ATM WILD-TYPE 
            6            44 
$`ATM MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-49-4486 TCGA-49-4507 
       19.92        37.02         9.96        14.93        76.21         8.81 
TCGA-49-4510 TCGA-55-1595 TCGA-55-6642 TCGA-64-5774 TCGA-64-5775 TCGA-67-6215 
       29.46        48.62        32.61        83.84         0.10         5.29 
TCGA-73-4659 TCGA-91-6836 
       23.38         0.36 

$`ATM WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        45.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05         2.96         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       32.84        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       12.16         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       37.02        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 
       20.02        18.84        14.04        12.66         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  ATM MUTATED ATM WILD-TYPE 
         0.10          0.07 
  ATM MUTATED ATM WILD-TYPE 
        83.84        120.79 
  ATM MUTATED ATM WILD-TYPE 
        21.65         14.04 
[1] "0.1 - 83.8 (21.6)"  "0.1 - 120.8 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED"   "ATM MUTATED" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED"   "ATM MUTATED" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED"   "ATM MUTATED" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
[1] "hr=" "1.2"
D149V2, continuous
D149V3, binary
               cls
clus             0  1
  ATM MUTATED    7  8
  ATM WILD-TYPE 86 71
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED      7    8
  ATM WILD-TYPE   86   71
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE           7            86
  MALE             8            71
D149V4, continuous
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-75-5122 
"ATM WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ATM MUTATED                            0                                 4
  ATM WILD-TYPE                          2                                35
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ATM MUTATED                                                   10
  ATM WILD-TYPE                                                104
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ATM MUTATED                                            0
  ATM WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ATM MUTATED                                               0
  ATM WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  ATM MUTATED                                1
  ATM WILD-TYPE                              1
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  ATM MUTATED                                    0                            0
  ATM WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  ATM MUTATED                               0
  ATM WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ATM MUTATED                                               0
  ATM WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  ATM MUTATED                              0
  ATM WILD-TYPE                            2
D149V5, multiclass
D149V6, binary
               cls
clus              0   1
  ATM MUTATED     1  14
  ATM WILD-TYPE  11 146
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED      1   14
  ATM WILD-TYPE   11  146
     clus
vv    ATM MUTATED ATM WILD-TYPE
  NO            1            11
  YES          14           146
D149V7, continuous
D149V8, continuous
               vv
clus             M0  M1  MX
  ATM MUTATED    12   1   2
  ATM WILD-TYPE 126   8  21
D149V9, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  M0          12           126
  M1           1             8
  MX           2            21
               vv
clus            N0 N1 N2 N3 NX
  ATM MUTATED   10  3  2  0  0
  ATM WILD-TYPE 85 34 32  1  4
D149V10, multiclass
               vv
clus            R0 R1 R2 RX
  ATM MUTATED   12  0  0  1
  ATM WILD-TYPE 93  5  4  9
D149V11, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  R0          12            93
  R1           0             5
  R2           0             4
  RX           1             9
D149V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ATM MUTATED          2        7         0         1          3          1
  ATM WILD-TYPE       35       45        10        23         30          5
               vv
clus            STAGE IV
  ATM MUTATED          1
  ATM WILD-TYPE        8
D149V13, multiclass

Clustering(150) Variable = IL1RAPL1 MUTATION ANALYSIS
D150V1, survival
                    sevent
clus2                 0  1
  IL1RAPL1 MUTATED    5  5
  IL1RAPL1 WILD-TYPE 98 45
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                10                143 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 5                 45 
$`IL1RAPL1 MUTATED`
TCGA-38-4626 TCGA-38-4632 TCGA-44-2662 TCGA-44-2665 TCGA-44-6774 TCGA-49-4488 
      120.79        44.61        15.78        13.15         5.42        28.57 
TCGA-49-4505 TCGA-50-5931 TCGA-64-1677 TCGA-67-3774 
       14.07         8.78        20.65        12.66 

$`IL1RAPL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 
       19.10        13.15        17.39         3.39         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
        7.33         0.99        20.02        18.84        14.04         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
              5.42               0.07 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            120.79              97.74 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            14.925             14.930 
[1] "5.4 - 120.8 (14.9)" "0.1 - 97.7 (14.9)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "IL1RAPL1 MUTATED"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "IL1RAPL1 MUTATED"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5429         TCGA-05-5715 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-38-4627         TCGA-38-4628         TCGA-38-4629 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4630         TCGA-38-4631         TCGA-38-4632 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-38-6178         TCGA-44-2655         TCGA-44-2656 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "IL1RAPL1 MUTATED"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4677         TCGA-91-6828         TCGA-91-6829 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
[1] "hr=" "1.2"
D150V2, continuous
D150V3, binary
                    cls
clus                  0  1
  IL1RAPL1 MUTATED    8  3
  IL1RAPL1 WILD-TYPE 85 76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      8    3
  IL1RAPL1 WILD-TYPE   85   76
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  FEMALE                8                 85
  MALE                  3                 76
D150V4, continuous
[1] "Remove cluster labels:" "IL1RAPL1 MUTATED"      
clus
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  IL1RAPL1 MUTATED                            0
  IL1RAPL1 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  IL1RAPL1 MUTATED                                   1
  IL1RAPL1 WILD-TYPE                                38
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IL1RAPL1 MUTATED                                                   10
  IL1RAPL1 WILD-TYPE                                                104
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IL1RAPL1 MUTATED                                            0
  IL1RAPL1 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IL1RAPL1 MUTATED                                               0
  IL1RAPL1 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  IL1RAPL1 MUTATED                                0
  IL1RAPL1 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  IL1RAPL1 MUTATED                                    0
  IL1RAPL1 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IL1RAPL1 MUTATED                              0                             0
  IL1RAPL1 WILD-TYPE                            2                             5
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IL1RAPL1 MUTATED                                               0
  IL1RAPL1 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  IL1RAPL1 MUTATED                              0
  IL1RAPL1 WILD-TYPE                            2
D150V5, multiclass
D150V6, binary
                    cls
clus                   0   1
  IL1RAPL1 MUTATED     0  11
  IL1RAPL1 WILD-TYPE  12 149
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      0   11
  IL1RAPL1 WILD-TYPE   12  149
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  NO                 0                 12
  YES               11                149
D150V7, continuous
D150V8, continuous
                    vv
clus                  M0  M1  MX
  IL1RAPL1 MUTATED     9   1   1
  IL1RAPL1 WILD-TYPE 129   8  22
D150V9, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  M0                9                129
  M1                1                  8
  MX                1                 22
                    vv
clus                 N0 N1 N2 N3 NX
  IL1RAPL1 MUTATED    5  4  2  0  0
  IL1RAPL1 WILD-TYPE 90 33 32  1  4
D150V10, multiclass
                    vv
clus                 R0 R1 R2 RX
  IL1RAPL1 MUTATED    9  0  0  0
  IL1RAPL1 WILD-TYPE 96  5  4 10
D150V11, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  R0                9                 96
  R1                0                  5
  R2                0                  4
  RX                0                 10
D150V12, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  IL1RAPL1 MUTATED          1        3         2         2          2
  IL1RAPL1 WILD-TYPE       36       49         8        22         31
                    vv
clus                 STAGE IIIB STAGE IV
  IL1RAPL1 MUTATED            0        1
  IL1RAPL1 WILD-TYPE          6        8
D150V13, multiclass

Clustering(151) Variable = AQP10 MUTATION ANALYSIS
D151V1, survival
                 sevent
clus2              0  1
  AQP10 MUTATED    5  0
  AQP10 WILD-TYPE 98 50
  AQP10 MUTATED AQP10 WILD-TYPE 
              5             148 
  AQP10 MUTATED AQP10 WILD-TYPE 
              0              50 
$`AQP10 MUTATED`
TCGA-38-4626 TCGA-44-2665 TCGA-44-2668 TCGA-64-5779 TCGA-64-5781 
      120.79        13.15         8.09        16.67        39.52 

$`AQP10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84         0.10        30.44         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  AQP10 MUTATED AQP10 WILD-TYPE 
           8.09            0.07 
  AQP10 MUTATED AQP10 WILD-TYPE 
         120.79           97.74 
  AQP10 MUTATED AQP10 WILD-TYPE 
          16.67           14.50 
[1] "8.1 - 120.8 (16.7)" "0.1 - 97.7 (14.5)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"AQP10 WILD-TYPE"   "AQP10 MUTATED" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6836 
"AQP10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"AQP10 WILD-TYPE"   "AQP10 MUTATED" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6836 
"AQP10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"AQP10 WILD-TYPE"   "AQP10 MUTATED" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6836 
"AQP10 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D151V2, continuous
D151V3, binary
                 cls
clus               0  1
  AQP10 MUTATED    4  2
  AQP10 WILD-TYPE 89 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AQP10 MUTATED      4    2
  AQP10 WILD-TYPE   89   77
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D151V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  AQP10 MUTATED                            1                                 1
  AQP10 WILD-TYPE                          1                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  AQP10 MUTATED                                                    3
  AQP10 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  AQP10 MUTATED                                            0
  AQP10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  AQP10 MUTATED                                               0
  AQP10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  AQP10 MUTATED                                0
  AQP10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  AQP10 MUTATED                                    0
  AQP10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  AQP10 MUTATED                              0                             1
  AQP10 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  AQP10 MUTATED                                               0
  AQP10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  AQP10 MUTATED                              0
  AQP10 WILD-TYPE                            2
D151V5, multiclass
D151V6, binary
                 cls
clus                0   1
  AQP10 MUTATED     1   5
  AQP10 WILD-TYPE  11 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AQP10 MUTATED      1    5
  AQP10 WILD-TYPE   11  155
     clus
vv    AQP10 MUTATED AQP10 WILD-TYPE
  NO              1              11
  YES             5             155
D151V7, continuous
D151V8, continuous
                 vv
clus               M0  M1  MX
  AQP10 MUTATED     6   0   0
  AQP10 WILD-TYPE 132   9  23
D151V9, multiclass
    clus
vv   AQP10 MUTATED AQP10 WILD-TYPE
  M0             6             132
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  AQP10 MUTATED    3  1  2  0  0
  AQP10 WILD-TYPE 92 36 32  1  4
D151V10, multiclass
                 vv
clus               R0  R1  R2  RX
  AQP10 MUTATED     5   0   1   0
  AQP10 WILD-TYPE 100   5   3  10
D151V11, multiclass
    clus
vv   AQP10 MUTATED AQP10 WILD-TYPE
  R0             5             100
  R1             0               5
  R2             1               3
  RX             0              10
D151V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  AQP10 MUTATED          0        2         1         1          2          0
  AQP10 WILD-TYPE       37       50         9        23         31          6
                 vv
clus              STAGE IV
  AQP10 MUTATED          0
  AQP10 WILD-TYPE        9
D151V13, multiclass

Clustering(152) Variable = OR4A15 MUTATION ANALYSIS
D152V1, survival
                  sevent
clus2               0  1
  OR4A15 MUTATED    7  7
  OR4A15 WILD-TYPE 96 43
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              139 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               7               43 
$`OR4A15 MUTATED`
TCGA-05-4389 TCGA-05-4398 TCGA-05-4427 TCGA-38-4625 TCGA-38-4631 TCGA-38-4632 
       45.01        47.05        26.01        97.74        11.64        44.61 
TCGA-44-2656 TCGA-49-4505 TCGA-50-5045 TCGA-55-5899 TCGA-64-1676 TCGA-64-5775 
       19.10        14.07        71.47         2.86        56.81         0.10 
TCGA-73-4659 TCGA-91-6829 
       23.38        41.33 

$`OR4A15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68       120.79        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR4A15 MUTATED OR4A15 WILD-TYPE 
            0.10             0.07 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           97.74           120.79 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           33.67            13.87 
[1] "0.1 - 97.7 (33.7)"  "0.1 - 120.8 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR4A15 MUTATED"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-91-6836 
"OR4A15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR4A15 MUTATED"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-91-6836 
"OR4A15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR4A15 MUTATED"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-91-6836 
"OR4A15 WILD-TYPE" 
[1] "hr=" "1.3"
D152V2, continuous
D152V3, binary
                  cls
clus                0  1
  OR4A15 MUTATED    6  8
  OR4A15 WILD-TYPE 87 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      6    8
  OR4A15 WILD-TYPE   87   71
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  FEMALE              6               87
  MALE                8               71
D152V4, continuous
[1] "Remove cluster labels:" "OR4A15 MUTATED"        
clus
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4A15 MUTATED                            0                                 3
  OR4A15 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4A15 MUTATED                                                   10
  OR4A15 WILD-TYPE                                                104
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4A15 MUTATED                                            0
  OR4A15 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4A15 MUTATED                                               1
  OR4A15 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4A15 MUTATED                                0
  OR4A15 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4A15 MUTATED                                    0
  OR4A15 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4A15 MUTATED                              0                             0
  OR4A15 WILD-TYPE                            2                             5
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4A15 MUTATED                                               0
  OR4A15 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR4A15 MUTATED                              0
  OR4A15 WILD-TYPE                            2
D152V5, multiclass
D152V6, binary
                  cls
clus                 0   1
  OR4A15 MUTATED     1  13
  OR4A15 WILD-TYPE  11 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      1   13
  OR4A15 WILD-TYPE   11  147
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  NO               1               11
  YES             13              147
D152V7, continuous
D152V8, continuous
                  vv
clus                M0  M1  MX
  OR4A15 MUTATED    12   1   1
  OR4A15 WILD-TYPE 126   8  22
D152V9, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  M0             12              126
  M1              1                8
  MX              1               22
                  vv
clus               N0 N1 N2 N3 NX
  OR4A15 MUTATED    7  5  1  1  0
  OR4A15 WILD-TYPE 88 32 33  0  4
D152V10, multiclass
                  vv
clus               R0 R1 R2 RX
  OR4A15 MUTATED   11  0  0  0
  OR4A15 WILD-TYPE 94  5  4 10
D152V11, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  R0             11               94
  R1              0                5
  R2              0                4
  RX              0               10
D152V12, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR4A15 MUTATED          4        4         0         2          2          1
  OR4A15 WILD-TYPE       33       48        10        22         31          5
                  vv
clus               STAGE IV
  OR4A15 MUTATED          1
  OR4A15 WILD-TYPE        8
D152V13, multiclass

Clustering(153) Variable = OR2G2 MUTATION ANALYSIS
D153V1, survival
                 sevent
clus2              0  1
  OR2G2 MUTATED    8  4
  OR2G2 WILD-TYPE 95 46
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             141 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
              4              46 
$`OR2G2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4432 TCGA-44-2656 TCGA-44-2657 TCGA-44-3918 
       19.92         9.96        25.02        19.10        13.15         6.44 
TCGA-50-5045 TCGA-50-5051 TCGA-55-1592 TCGA-64-5781 TCGA-73-4666 TCGA-91-6829 
       71.47        14.96        23.05        39.52        20.28        41.33 

$`OR2G2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 
       35.28        11.64        44.61         5.19        18.87        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
       12.99         4.93        20.48        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2G2 MUTATED OR2G2 WILD-TYPE 
           6.44            0.07 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
          71.47          120.79 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
          20.10           14.01 
[1] "6.4 - 71.5 (20.1)"  "0.1 - 120.8 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2G2 MUTATED"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-91-6836 
"OR2G2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2G2 MUTATED"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-91-6836 
"OR2G2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2G2 MUTATED"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-91-6836 
"OR2G2 WILD-TYPE" 
[1] "hr=" "1.1"
D153V2, continuous
D153V3, binary
                 cls
clus               0  1
  OR2G2 MUTATED    6  6
  OR2G2 WILD-TYPE 87 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G2 MUTATED      6    6
  OR2G2 WILD-TYPE   87   73
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  FEMALE             6              87
  MALE               6              73
D153V4, continuous
[1] "Remove cluster labels:" "OR2G2 MUTATED"         
clus
  OR2G2 MUTATED OR2G2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2G2 MUTATED                            0                                 4
  OR2G2 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2G2 MUTATED                                                    7
  OR2G2 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2G2 MUTATED                                            0
  OR2G2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2G2 MUTATED                                               1
  OR2G2 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2G2 MUTATED                                0
  OR2G2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2G2 MUTATED                                    0
  OR2G2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2G2 MUTATED                              0                             0
  OR2G2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2G2 MUTATED                                               0
  OR2G2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR2G2 MUTATED                              0
  OR2G2 WILD-TYPE                            2
D153V5, multiclass
D153V6, binary
                 cls
clus                0   1
  OR2G2 MUTATED     2  10
  OR2G2 WILD-TYPE  10 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G2 MUTATED      2   10
  OR2G2 WILD-TYPE   10  150
     clus
vv    OR2G2 MUTATED OR2G2 WILD-TYPE
  NO              2              10
  YES            10             150
D153V7, continuous
D153V8, continuous
                 vv
clus               M0  M1  MX
  OR2G2 MUTATED    10   1   1
  OR2G2 WILD-TYPE 128   8  22
D153V9, multiclass
    clus
vv   OR2G2 MUTATED OR2G2 WILD-TYPE
  M0            10             128
  M1             1               8
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  OR2G2 MUTATED    7  3  1  0  1
  OR2G2 WILD-TYPE 88 34 33  1  3
D153V10, multiclass
                 vv
clus              R0 R1 R2 RX
  OR2G2 MUTATED    9  0  0  0
  OR2G2 WILD-TYPE 96  5  4 10
D153V11, multiclass
    clus
vv   OR2G2 MUTATED OR2G2 WILD-TYPE
  R0             9              96
  R1             0               5
  R2             0               4
  RX             0              10
D153V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2G2 MUTATED          3        5         0         1          1          1
  OR2G2 WILD-TYPE       34       47        10        23         32          5
                 vv
clus              STAGE IV
  OR2G2 MUTATED          1
  OR2G2 WILD-TYPE        8
D153V13, multiclass

Clustering(154) Variable = CXCL6 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2               0   1
  CXCL6 MUTATED     2   2
  CXCL6 WILD-TYPE 101  48
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             149 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              2              48 
$`CXCL6 MUTATED`
TCGA-05-4396 TCGA-50-5931 TCGA-64-1676 TCGA-91-6836 
        9.96         8.78        56.81         0.36 

$`CXCL6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  CXCL6 MUTATED CXCL6 WILD-TYPE 
           0.36            0.07 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
          56.81          120.79 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
           9.37           14.96 
[1] "0.4 - 56.8 (9.4)"   "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6836 
  "CXCL6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6836 
  "CXCL6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6836 
  "CXCL6 MUTATED" 
[1] "hr=" "1.5"
D154V2, continuous
D154V3, binary
                 cls
clus               0  1
  CXCL6 MUTATED    2  2
  CXCL6 WILD-TYPE 91 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCL6 MUTATED      2    2
  CXCL6 WILD-TYPE   91   77
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  FEMALE             2              91
  MALE               2              77
D154V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CXCL6 MUTATED                            0                                 1
  CXCL6 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CXCL6 MUTATED                                                    3
  CXCL6 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CXCL6 MUTATED                                            0
  CXCL6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CXCL6 MUTATED                                               0
  CXCL6 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CXCL6 MUTATED                                0
  CXCL6 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CXCL6 MUTATED                                    0
  CXCL6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CXCL6 MUTATED                              0                             0
  CXCL6 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CXCL6 MUTATED                                               0
  CXCL6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CXCL6 MUTATED                              0
  CXCL6 WILD-TYPE                            2
D154V5, multiclass
D154V6, binary
                 cls
clus                0   1
  CXCL6 MUTATED     0   4
  CXCL6 WILD-TYPE  12 156
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCL6 MUTATED      0    4
  CXCL6 WILD-TYPE   12  156
     clus
vv    CXCL6 MUTATED CXCL6 WILD-TYPE
  NO              0              12
  YES             4             156
D154V7, continuous
D154V8, continuous
[1] "Remove cluster labels:" "CXCL6 MUTATED"         
clus
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
                 vv
clus               M0  M1  MX
  CXCL6 MUTATED     3   0   1
  CXCL6 WILD-TYPE 135   9  22
D154V9, multiclass
    clus
vv   CXCL6 MUTATED CXCL6 WILD-TYPE
  M0             3             135
  M1             0               9
  MX             1              22
                 vv
clus              N0 N1 N2 N3 NX
  CXCL6 MUTATED    3  1  0  0  0
  CXCL6 WILD-TYPE 92 36 34  1  4
D154V10, multiclass
                 vv
clus               R0  R1  R2  RX
  CXCL6 MUTATED     3   0   0   0
  CXCL6 WILD-TYPE 102   5   4  10
D154V11, multiclass
    clus
vv   CXCL6 MUTATED CXCL6 WILD-TYPE
  R0             3             102
  R1             0               5
  R2             0               4
  RX             0              10
D154V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CXCL6 MUTATED          1        2         0         0          0          1
  CXCL6 WILD-TYPE       36       50        10        24         33          5
                 vv
clus              STAGE IV
  CXCL6 MUTATED          0
  CXCL6 WILD-TYPE        9
D154V13, multiclass

Clustering(155) Variable = BTK MUTATION ANALYSIS
D155V1, survival
               sevent
clus2            0  1
  BTK MUTATED    6  0
  BTK WILD-TYPE 97 50
  BTK MUTATED BTK WILD-TYPE 
            6           147 
  BTK MUTATED BTK WILD-TYPE 
            0            50 
$`BTK MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4432 TCGA-44-3398 TCGA-67-3770 TCGA-73-4662 
       19.92        37.02        25.02         8.32         0.99        29.95 

$`BTK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        45.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.29         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        23.38        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  BTK MUTATED BTK WILD-TYPE 
         0.99          0.07 
  BTK MUTATED BTK WILD-TYPE 
        37.02        120.79 
  BTK MUTATED BTK WILD-TYPE 
        22.47         14.07 
[1] "1.0 - 37.0 (22.5)"  "0.1 - 120.8 (14.1)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429    TCGA-05-5715 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629    TCGA-38-4630 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655    TCGA-44-2656 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662    TCGA-44-2665 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490    TCGA-49-4494 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743    TCGA-49-6744 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072    TCGA-50-5930 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935    TCGA-50-5936 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944    TCGA-50-5946 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593    TCGA-50-6594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
[1] "hr="     "2.6e+07"
D155V2, continuous
D155V3, binary
               cls
clus             0  1
  BTK MUTATED    5  2
  BTK WILD-TYPE 88 77
[1] "tbl2"
               cls
clus            [,1] [,2]
  BTK MUTATED      5    2
  BTK WILD-TYPE   88   77
        clus
vv       BTK MUTATED BTK WILD-TYPE
  FEMALE           5            88
  MALE             2            77
D155V4, continuous
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4659    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5122 
"BTK WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BTK MUTATED                            0                                 3
  BTK WILD-TYPE                          2                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BTK MUTATED                                                    4
  BTK WILD-TYPE                                                110
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BTK MUTATED                                            0
  BTK WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BTK MUTATED                                               0
  BTK WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  BTK MUTATED                                0
  BTK WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  BTK MUTATED                                    0                            0
  BTK WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  BTK MUTATED                               0
  BTK WILD-TYPE                             5
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BTK MUTATED                                               0
  BTK WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  BTK MUTATED                              0
  BTK WILD-TYPE                            2
D155V5, multiclass
D155V6, binary
               cls
clus              0   1
  BTK MUTATED     0   7
  BTK WILD-TYPE  12 153
[1] "tbl2"
               cls
clus            [,1] [,2]
  BTK MUTATED      0    7
  BTK WILD-TYPE   12  153
     clus
vv    BTK MUTATED BTK WILD-TYPE
  NO            0            12
  YES           7           153
D155V7, continuous
D155V8, continuous
               vv
clus             M0  M1  MX
  BTK MUTATED     7   0   0
  BTK WILD-TYPE 131   9  23
D155V9, multiclass
    clus
vv   BTK MUTATED BTK WILD-TYPE
  M0           7           131
  M1           0             9
  MX           0            23
               vv
clus            N0 N1 N2 N3 NX
  BTK MUTATED    6  1  0  0  0
  BTK WILD-TYPE 89 36 34  1  4
D155V10, multiclass
               vv
clus            R0 R1 R2 RX
  BTK MUTATED    7  0  0  0
  BTK WILD-TYPE 98  5  4 10
D155V11, multiclass
    clus
vv   BTK MUTATED BTK WILD-TYPE
  R0           7            98
  R1           0             5
  R2           0             4
  RX           0            10
D155V12, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BTK MUTATED          3        3         0         1          0          0
  BTK WILD-TYPE       34       49        10        23         33          6
               vv
clus            STAGE IV
  BTK MUTATED          0
  BTK WILD-TYPE        9
D155V13, multiclass

Clustering(156) Variable = OLAH MUTATION ANALYSIS
D156V1, survival
                sevent
clus2             0  1
  OLAH MUTATED    5  1
  OLAH WILD-TYPE 98 49
  OLAH MUTATED OLAH WILD-TYPE 
             6            147 
  OLAH MUTATED OLAH WILD-TYPE 
             1             49 
$`OLAH MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-55-5899 TCGA-64-1678 TCGA-64-5779 TCGA-67-3771 
       37.02         9.96         2.86        39.09        16.67        20.02 

$`OLAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       38.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 
        0.07        32.61         0.79        56.81        20.65        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.29         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OLAH MUTATED OLAH WILD-TYPE 
          2.86           0.07 
  OLAH MUTATED OLAH WILD-TYPE 
         39.09         120.79 
  OLAH MUTATED OLAH WILD-TYPE 
        18.345         14.070 
[1] "2.9 - 39.1 (18.3)"  "0.1 - 120.8 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"OLAH WILD-TYPE"   "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"OLAH WILD-TYPE"   "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"OLAH WILD-TYPE"   "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
[1] "hr=" "1.9"
D156V2, continuous
D156V3, binary
                cls
clus              0  1
  OLAH MUTATED    3  4
  OLAH WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      3    4
  OLAH WILD-TYPE   90   75
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D156V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OLAH MUTATED                            1                                 3
  OLAH WILD-TYPE                          1                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OLAH MUTATED                                                    3
  OLAH WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OLAH MUTATED                                            0
  OLAH WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OLAH MUTATED                                               0
  OLAH WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  OLAH MUTATED                                0
  OLAH WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  OLAH MUTATED                                    0
  OLAH WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OLAH MUTATED                              0                             0
  OLAH WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OLAH MUTATED                                               0
  OLAH WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  OLAH MUTATED                              0
  OLAH WILD-TYPE                            2
D156V5, multiclass
D156V6, binary
                cls
clus               0   1
  OLAH MUTATED     1   6
  OLAH WILD-TYPE  11 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      1    6
  OLAH WILD-TYPE   11  154
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  NO             1             11
  YES            6            154
D156V7, continuous
D156V8, continuous
                vv
clus              M0  M1  MX
  OLAH MUTATED     7   0   0
  OLAH WILD-TYPE 131   9  23
D156V9, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  M0            7            131
  M1            0              9
  MX            0             23
                vv
clus             N0 N1 N2 N3 NX
  OLAH MUTATED    3  2  2  0  0
  OLAH WILD-TYPE 92 35 32  1  4
D156V10, multiclass
                vv
clus             R0 R1 R2 RX
  OLAH MUTATED    7  0  0  0
  OLAH WILD-TYPE 98  5  4 10
D156V11, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  R0            7             98
  R1            0              5
  R2            0              4
  RX            0             10
D156V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OLAH MUTATED          2        1         1         0          1          2
  OLAH WILD-TYPE       35       51         9        24         32          4
                vv
clus             STAGE IV
  OLAH MUTATED          0
  OLAH WILD-TYPE        9
D156V13, multiclass

Clustering(157) Variable = DYDC2 MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2               0   1
  DYDC2 MUTATED     3   0
  DYDC2 WILD-TYPE 100  50
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             150 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              0              50 
$`DYDC2 MUTATED`
TCGA-05-4389 TCGA-35-3615 TCGA-44-2668 
       45.01         0.46         8.09 

$`DYDC2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
        1.02         4.96         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.29         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  DYDC2 MUTATED DYDC2 WILD-TYPE 
           0.46            0.07 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
          45.01          120.79 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
          8.090          14.945 
[1] "0.5 - 45.0 (8.1)"   "0.1 - 120.8 (14.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6836 
"DYDC2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6836 
"DYDC2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6836 
"DYDC2 WILD-TYPE" 
[1] "hr="     "9300000"
D157V2, continuous
D157V3, binary
                 cls
clus               0  1
  DYDC2 MUTATED    0  3
  DYDC2 WILD-TYPE 93 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYDC2 MUTATED      0    3
  DYDC2 WILD-TYPE   93   76
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  FEMALE             0              93
  MALE               3              76
D157V4, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DYDC2 MUTATED                            0                                 1
  DYDC2 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DYDC2 MUTATED                                                    2
  DYDC2 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DYDC2 MUTATED                                            0
  DYDC2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DYDC2 MUTATED                                               0
  DYDC2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  DYDC2 MUTATED                                0
  DYDC2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  DYDC2 MUTATED                                    0
  DYDC2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DYDC2 MUTATED                              0                             0
  DYDC2 WILD-TYPE                            2                             5
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DYDC2 MUTATED                                               0
  DYDC2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  DYDC2 MUTATED                              0
  DYDC2 WILD-TYPE                            2
D157V5, multiclass
D157V6, binary
                 cls
clus                0   1
  DYDC2 MUTATED     0   3
  DYDC2 WILD-TYPE  12 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYDC2 MUTATED      0    3
  DYDC2 WILD-TYPE   12  157
     clus
vv    DYDC2 MUTATED DYDC2 WILD-TYPE
  NO              0              12
  YES             3             157
D157V7, continuous
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              2             110 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4405      TCGA-05-4410      TCGA-05-4415 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4417      TCGA-05-4418      TCGA-05-4420      TCGA-05-4422 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4425      TCGA-05-4426      TCGA-05-4427 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5428 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4629      TCGA-38-4631      TCGA-38-4632 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2666      TCGA-44-3396      TCGA-44-3398 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6148 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4494      TCGA-49-4505      TCGA-49-4506 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4514      TCGA-49-6742 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5931      TCGA-50-5939 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-6590      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6543      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-73-4658 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-75-5122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-6203      TCGA-75-6206 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-80-5611      TCGA-91-6829 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6835      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
D157V8, continuous
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
                 vv
clus               M0  M1  MX
  DYDC2 MUTATED     3   0   0
  DYDC2 WILD-TYPE 135   9  23
D157V9, multiclass
    clus
vv   DYDC2 MUTATED DYDC2 WILD-TYPE
  M0             3             135
  M1             0               9
  MX             0              23
                 vv
clus              N0 N1 N2 N3 NX
  DYDC2 MUTATED    3  0  0  0  0
  DYDC2 WILD-TYPE 92 37 34  1  4
D157V10, multiclass
                 vv
clus               R0  R1  R2  RX
  DYDC2 MUTATED     3   0   0   0
  DYDC2 WILD-TYPE 102   5   4  10
D157V11, multiclass
    clus
vv   DYDC2 MUTATED DYDC2 WILD-TYPE
  R0             3             102
  R1             0               5
  R2             0               4
  RX             0              10
D157V12, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DYDC2 MUTATED          1        2         0         0          0          0
  DYDC2 WILD-TYPE       36       50        10        24         33          6
                 vv
clus              STAGE IV
  DYDC2 MUTATED          0
  DYDC2 WILD-TYPE        9
D157V13, multiclass

Clustering(158) Variable = DGKB MUTATION ANALYSIS
D158V1, survival
                sevent
clus2             0  1
  DGKB MUTATED    5  6
  DGKB WILD-TYPE 98 44
  DGKB MUTATED DGKB WILD-TYPE 
            11            142 
  DGKB MUTATED DGKB WILD-TYPE 
             6             44 
$`DGKB MUTATED`
TCGA-05-4397 TCGA-05-4405 TCGA-44-2656 TCGA-44-6144 TCGA-44-6777 TCGA-50-5049 
       24.03        20.05        19.10         0.30        32.45        48.82 
TCGA-50-5931 TCGA-50-5941 TCGA-50-6590 TCGA-55-1592 TCGA-91-6829 
        8.78         9.37        42.31        23.05        41.33 

$`DGKB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       38.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
        9.96        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.29 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  DGKB MUTATED DGKB WILD-TYPE 
          0.30           0.07 
  DGKB MUTATED DGKB WILD-TYPE 
         48.82         120.79 
  DGKB MUTATED DGKB WILD-TYPE 
        23.050         14.025 
[1] "0.3 - 48.8 (23.1)"  "0.1 - 120.8 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-91-6836 
"DGKB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-91-6836 
"DGKB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-91-6836 
"DGKB WILD-TYPE" 
[1] "hr=" "1.5"
D158V2, continuous
D158V3, binary
                cls
clus              0  1
  DGKB MUTATED    5  6
  DGKB WILD-TYPE 88 73
[1] "tbl2"
                cls
clus             [,1] [,2]
  DGKB MUTATED      5    6
  DGKB WILD-TYPE   88   73
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  FEMALE            5             88
  MALE              6             73
D158V4, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DGKB MUTATED                            0                                 2
  DGKB WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DGKB MUTATED                                                    8
  DGKB WILD-TYPE                                                106
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DGKB MUTATED                                            0
  DGKB WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DGKB MUTATED                                               1
  DGKB WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  DGKB MUTATED                                0
  DGKB WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  DGKB MUTATED                                    0
  DGKB WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DGKB MUTATED                              0                             0
  DGKB WILD-TYPE                            2                             5
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DGKB MUTATED                                               0
  DGKB WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  DGKB MUTATED                              0
  DGKB WILD-TYPE                            2
D158V5, multiclass
D158V6, binary
                cls
clus               0   1
  DGKB MUTATED     1  10
  DGKB WILD-TYPE  11 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  DGKB MUTATED      1   10
  DGKB WILD-TYPE   11  150
     clus
vv    DGKB MUTATED DGKB WILD-TYPE
  NO             1             11
  YES           10            150
D158V7, continuous
D158V8, continuous
                vv
clus              M0  M1  MX
  DGKB MUTATED     9   0   2
  DGKB WILD-TYPE 129   9  21
D158V9, multiclass
    clus
vv   DGKB MUTATED DGKB WILD-TYPE
  M0            9            129
  M1            0              9
  MX            2             21
                vv
clus             N0 N1 N2 N3 NX
  DGKB MUTATED    8  1  1  0  1
  DGKB WILD-TYPE 87 36 33  1  3
D158V10, multiclass
                vv
clus              R0  R1  R2  RX
  DGKB MUTATED     4   0   0   1
  DGKB WILD-TYPE 101   5   4   9
D158V11, multiclass
    clus
vv   DGKB MUTATED DGKB WILD-TYPE
  R0            4            101
  R1            0              5
  R2            0              4
  RX            1              9
D158V12, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DGKB MUTATED          3        6         0         1          1          0
  DGKB WILD-TYPE       34       46        10        23         32          6
                vv
clus             STAGE IV
  DGKB MUTATED          0
  DGKB WILD-TYPE        9
D158V13, multiclass
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V7 
                 "NUMBERPACKYEARSSMOKED" 
                                      V8 
             "YEAROFTOBACCOSMOKINGONSET" 
                                      V9 
                    "DISTANT.METASTASIS" 
                                     V10 
                 "LYMPH.NODE.METASTASIS" 
                                     V11 
             "COMPLETENESS.OF.RESECTION" 
                                     V12 
                       "TUMOR.STAGECODE" 
                                     V13 
                 "NEOPLASM.DISEASESTAGE" 
> q(save="no")
