
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/LUSC-TP/3537070/LUSC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LUSC-TP/3351655/LUSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=351, in cluster file=418, common to both=347
[1]  12 347
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
42 52 32 28 
 1  2  3  4 
42 52 32 28 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
22 56 23 53 
 1  2  3  4 
22 56 23 53 
[1] "CN_CNMF"
[1] 3
  1   2   3 
121 104 120 
  1   2   3 
121 104 120 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
76 71 56 
 1  2  3 
76 71 56 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
60 73 62 
 1  2  3 
60 73 62 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
58 48 49 40 
 1  2  3  4 
58 48 49 40 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3   4 
 71  97 100  53 
  1   2   3   4 
 71  97 100  53 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
102  63 156 
  1   2   3 
102  63 156 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
131 128  55 
  1   2   3 
131 128  55 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 92 160  62 
  1   2   3 
 92 160  62 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
93 55 30 
 1  2  3 
93 55 30 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
67 31 80 
 1  2  3 
67 31 80 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NUMBERPACKYEARSSMOKED"                 
[14] "YEAROFTOBACCOSMOKINGONSET"             
[15] "DISTANT.METASTASIS"                    
[16] "LYMPH.NODE.METASTASIS"                 
[17] "COMPLETENESS.OF.RESECTION"             
[18] "TUMOR.STAGECODE"                       
[19] "NEOPLASM.DISEASESTAGE"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 347 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3516         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
         962           NA          908          661          329          608 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
         223          454          131         1953           53          429 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
         822         1485          622         1067         1470          734 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
          17         1161         1057          399           NA          587 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
          NA          358          964         1974         1932          444 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
        1345           24         1651         2170           NA          357 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         573          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
         428           NA          334           NA          821           80 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        1874          958          881          999          950         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
         698          168           NA           NA          120           13 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
          12          199          246          227          238          207 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
          12          103         1454         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
         832         1107          474         1084           24          544 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
          NA          556          550          399          352          267 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
         258          549          213          183           85           NA 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
          NA          212           48         2023          202          193 
TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 
          NA           NA           NA           NA           NA           29 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-51-6867 TCGA-52-7622 
          18           12           12           63           NA          541 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
          NA          922           NA           NA          880            3 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
          NA           62           31           30           13           30 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
          44           40           26            6            1          177 
TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW 
          36           17           16           34           30           NA 
TCGA-56-A4BX TCGA-56-A4BY TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
          46           30          473          109           NA          311 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
          NA           NA         2500          660         2082         1505 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
        1685          888          274         1456          512         1075 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
        1181          931           96          793          733          693 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 
          37          719          358           NA           NA           NA 
TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 TCGA-66-2727 TCGA-66-2734 
          NA           NA           NA           NA           NA         1311 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
          61          641           30           31           61           28 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
          30           30          638          761           30           61 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
          31           61           61           NA          700          578 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
          NA           61          578           NA          121           NA 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
         759           59          790         1217          699           NA 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
         699           NA          913           NA         1645          122 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        1492           83          202          211          244           95 
TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
          NA           NA           NA           NA           NA           NA 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
          NA         2736           NA           15         1285           NA 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
          NA           NA           NA          479           NA           NA 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
        1641           NA         2522           NA           NA           NA 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
          NA         3166           NA           NA          833           NA 
TCGA-77-8146 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-79-5596 
        2183          293           NA         1092           10           NA 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
          NA           11           24           34           18           10 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7710 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
          49            1           NA           35           38           60 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
          26           60           16           43           14           36 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-A4QR TCGA-85-A50M 
          13           11           44           54           25           19 
TCGA-85-A50Z TCGA-85-A511 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
          NA           NA           41           47           89           18 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
         100          244          331           82          106          122 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
         160           69           87           NA          143         1213 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        1323          188          210          115          413          223 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 
         308          222           35          449           92 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=119,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=225,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=132,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'NUMBERPACKYEARSSMOKED':	nDistinctValues=91,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'DISTANT.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'LYMPH.NODE.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TUMOR.STAGECODE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOPLASM.DISEASESTAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [6] "NUMBERPACKYEARSSMOKED"                 
 [7] "YEAROFTOBACCOSMOKINGONSET"             
 [8] "DISTANT.METASTASIS"                    
 [9] "LYMPH.NODE.METASTASIS"                 
[10] "COMPLETENESS.OF.RESECTION"             
[11] "TUMOR.STAGECODE"                       
[12] "NEOPLASM.DISEASESTAGE"                 
[1] "TUMOR.?STAGE" "11"          
[1] "stage2"
vv
 T1 T1A T1B  T2 T2A T2B  T3  T4 
 43  13  26 146  46  19  36  18 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 347 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=91, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=51, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=9, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 25 16
  subtype2 31 19
  subtype3 13 17
  subtype4 17 10
subtype1 subtype2 subtype3 subtype4 
      41       50       30       27 
subtype1 subtype2 subtype3 subtype4 
      16       19       17       10 
$subtype1
TCGA-18-3406 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1070 TCGA-21-1079 
       12.16        13.02         1.61        43.76       115.59        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-22-0944 TCGA-22-1011 TCGA-22-4595 
      122.43         9.30       119.80         7.33         1.74        24.13 
TCGA-22-4607 TCGA-33-4547 TCGA-33-4589 TCGA-34-2600 TCGA-34-2609 TCGA-34-5241 
       19.30        43.10        10.98        61.61        31.23        14.07 
TCGA-37-3783 TCGA-37-3789 TCGA-39-5029 TCGA-43-3920 TCGA-56-1622 TCGA-60-2707 
        3.95         0.43        24.33         8.78        28.93        21.70 
TCGA-60-2708 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-66-2734 
       68.45        30.61         3.16        26.07         1.22        43.10 
TCGA-66-2742 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 
       21.07         0.99         2.01         2.01        19.00        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2789 
       12.03         3.98        12.00        22.98         4.04 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4086 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        2.79        46.88        99.16        70.13        60.89        34.78 
TCGA-22-1012 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-33-4532 TCGA-33-4538 
       14.10        38.17        34.75        13.12        82.98        97.94 
TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 TCGA-39-5016 TCGA-39-5021 TCGA-39-5036 
        2.63        28.96         7.73        74.07        68.58        35.64 
TCGA-39-5037 TCGA-43-3394 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        0.79        11.57         9.96         0.39         0.39         2.07 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 
       55.40        29.19        47.87        24.10        22.78        16.96 
TCGA-66-2737 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2770 TCGA-66-2773 
        2.01        20.98        25.02         1.02        23.01         3.02 
TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
        2.01        24.95        40.01         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 
        4.01        49.05 

$subtype3
TCGA-18-3409 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
       79.46        19.99        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-33-4566 TCGA-34-2604 TCGA-34-2608 
       48.82        48.33         0.56       173.79        31.50        32.84 
TCGA-37-3792 TCGA-39-5030 TCGA-43-2576 TCGA-43-2581 TCGA-60-2696 TCGA-60-2698 
        0.39         1.94        18.28        13.12         3.58        10.22 
TCGA-60-2706 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2725 TCGA-66-2744 
       82.19         9.01        16.83        35.34        23.64         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2767 TCGA-66-2769 TCGA-66-2785 TCGA-66-2786 
        1.02         0.92         2.01         7.07         1.94        25.97 

$subtype4
TCGA-18-3410 TCGA-18-3417 TCGA-18-4083 TCGA-21-1078 TCGA-21-1083 TCGA-22-4591 
        4.80        24.92         6.15        15.55         8.78        20.45 
TCGA-22-4613 TCGA-33-4533 TCGA-33-4582 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
       11.77       114.05       103.53         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5034 TCGA-39-5035 
        7.82         6.81         0.39        47.80        36.39        15.58 
TCGA-43-2578 TCGA-60-2695 TCGA-60-2716 TCGA-60-2726 TCGA-66-2754 TCGA-66-2756 
       18.08        15.55        38.83        11.77         2.01         0.99 
TCGA-66-2757 TCGA-66-2790 TCGA-66-2793 
        0.99        22.98        10.06 

subtype1 subtype2 subtype3 subtype4 
    0.43     0.39     0.39     0.39 
subtype1 subtype2 subtype3 subtype4 
  122.43    99.16   173.79   114.05 
subtype1 subtype2 subtype3 subtype4 
  19.000   24.985   15.880   11.770 
[1] "0.4 - 122.4 (19.0)" "0.4 - 99.2 (25.0)"  "0.4 - 173.8 (15.9)"
[4] "0.4 - 114.0 (11.8)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1  9 33
  subtype2 13 39
  subtype3 11 21
  subtype4 11 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   33
  subtype2   13   39
  subtype3   11   21
  subtype4   11   17
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        9       13       11       11
  MALE         33       39       21       17
D1V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     0
  subtype2                                     3
  subtype3                                     1
  subtype4                                     1
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      0
  subtype2                                      0
  subtype3                                      0
  subtype4                                      1
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          42
  subtype2                                                          49
  subtype3                                                          31
  subtype4                                                          26
D1V5, multiclass
D1V6, binary
          cls
clus        0  1
  subtype1  1 41
  subtype2  0 52
  subtype3  1 31
  subtype4  0 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   41
  subtype2    0   52
  subtype3    1   31
  subtype4    0   28
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        1        0
  YES       41       52       31       28
D1V7, continuous
D1V8, continuous
          vv
clus       M0 M1
  subtype1 38  2
  subtype2 50  0
  subtype3 32  0
  subtype4 26  2
D1V9, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       38       50       32       26
  M1        2        0        0        2
          vv
clus       N0 N1 N2 N3
  subtype1 26 11  3  2
  subtype2 28 17  5  2
  subtype3 22  6  3  1
  subtype4 20  6  2  0
D1V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 38  0  1  1
  subtype2 47  1  1  1
  subtype3 27  1  0  3
  subtype4 27  1  0  0
D1V11, multiclass
D1V12, continuous
          vv
clus       STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB STAGE IV
  subtype1        2       21         0         9          6          2        2
  subtype2        2       24         4         9          6          7        0
  subtype3        8       11         2         4          4          2        0
  subtype4        8        5         1         5          3          4        2
D1V13, multiclass

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 16  6
  subtype2 33 21
  subtype3 12 10
  subtype4 25 25
subtype1 subtype2 subtype3 subtype4 
      22       54       22       50 
subtype1 subtype2 subtype3 subtype4 
       6       21       10       25 
$subtype1
TCGA-21-1083 TCGA-22-1005 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-37-4129 
        8.78        64.21        48.82        48.33         0.56         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5034 
        8.09         7.46         6.81         0.39        47.80        36.39 
TCGA-39-5035 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-60-2695 TCGA-60-2706 
       15.58        18.28        18.08        13.12        15.55        82.19 
TCGA-60-2714 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       16.83         2.01         0.99         0.99 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
        6.15         2.79        46.88        99.16        70.13        60.89 
TCGA-21-1077 TCGA-22-0944 TCGA-22-1012 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       34.78         7.33        14.10        38.17        34.75        13.12 
TCGA-33-4532 TCGA-33-4538 TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 TCGA-37-4133 
       82.98        97.94         2.63        28.96         7.73         7.82 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-46-3768 
       74.07        68.58        35.64         0.79        11.57         9.96 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
        0.39         0.39         2.07        55.40        29.19        47.87 
TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 TCGA-66-2759 
       24.10        22.78        16.96         2.01        20.98        25.02 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 
        1.02         2.01        23.01         3.02         2.01        24.95 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01         5.03        30.02        54.08         4.01        49.05 

$subtype3
TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
       13.02         1.61        43.76        15.55       122.43       119.80 
TCGA-22-1011 TCGA-22-4591 TCGA-22-4613 TCGA-33-4582 TCGA-34-2600 TCGA-56-1622 
        1.74        20.45        11.77       103.53        61.61        28.93 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2726 TCGA-66-2742 TCGA-66-2763 
       38.83        30.61        26.07        11.77        21.07         0.99 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2781 TCGA-66-2793 
       19.00        19.00         3.98        10.06 

$subtype4
TCGA-18-3406 TCGA-18-3409 TCGA-18-3410 TCGA-18-3417 TCGA-21-1070 TCGA-21-1079 
       12.16        79.46         4.80        24.92       115.59        31.69 
TCGA-21-1081 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1016 TCGA-22-4595 
        9.30        19.99        14.93         4.31        27.02        24.13 
TCGA-22-4607 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4589 TCGA-34-2604 
       19.30       114.05        43.10       173.79        10.98        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       32.84        31.23        14.07         3.95         0.43         0.39 
TCGA-39-5029 TCGA-39-5030 TCGA-43-3920 TCGA-60-2696 TCGA-60-2698 TCGA-60-2707 
       24.33         1.94         8.78         3.58        10.22        21.70 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2715 TCGA-60-2720 TCGA-60-2724 TCGA-60-2725 
       68.45         9.01        35.34         3.16         1.22        23.64 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2765 TCGA-66-2768 
       43.10         0.99         1.02         0.92         2.01         2.01 
TCGA-66-2769 TCGA-66-2780 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
        7.07        12.03        12.00         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 
        4.04        22.98 

subtype1 subtype2 subtype3 subtype4 
    0.39     0.39     0.99     0.39 
subtype1 subtype2 subtype3 subtype4 
   82.19    99.16   122.43   173.79 
subtype1 subtype2 subtype3 subtype4 
  14.335   23.555   19.725   13.115 
[1] "0.4 - 82.2 (14.3)"  "0.4 - 99.2 (23.6)"  "1.0 - 122.4 (19.7)"
[4] "0.4 - 173.8 (13.1)"
  [1] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype3"
 [25] "subtype4" "subtype3" "subtype1" "subtype4" "subtype2" "subtype4"
 [31] "subtype4" "subtype1" "subtype3" "subtype2" "subtype4" "subtype1"
 [37] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [55] "subtype4" "subtype2" "subtype4" "subtype4" "subtype2" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
 [91] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
 [97] "subtype4" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype4"
[109] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
[115] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype4"
[127] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
[139] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype3"
 [25] "subtype4" "subtype3" "subtype1" "subtype4" "subtype2" "subtype4"
 [31] "subtype4" "subtype1" "subtype3" "subtype2" "subtype4" "subtype1"
 [37] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [55] "subtype4" "subtype2" "subtype4" "subtype4" "subtype2" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
 [91] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
 [97] "subtype4" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype4"
[109] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
[115] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype4"
[127] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
[139] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype3"
 [25] "subtype4" "subtype3" "subtype1" "subtype4" "subtype2" "subtype4"
 [31] "subtype4" "subtype1" "subtype3" "subtype2" "subtype4" "subtype1"
 [37] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [55] "subtype4" "subtype2" "subtype4" "subtype4" "subtype2" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
 [91] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
 [97] "subtype4" "subtype2" "subtype1" "subtype4" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype4"
[109] "subtype3" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
[115] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype4"
[127] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype4" "subtype3" "subtype4" "subtype2" "subtype4" "subtype4"
[139] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 14  8
  subtype2 13 43
  subtype3  5 18
  subtype4 12 41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14    8
  subtype2   13   43
  subtype3    5   18
  subtype4   12   41
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       14       13        5       12
  MALE          8       43       18       41
D2V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     1
  subtype2                                     3
  subtype3                                     0
  subtype4                                     1
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      0
  subtype2                                      0
  subtype3                                      1
  subtype4                                      0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          21
  subtype2                                                          53
  subtype3                                                          22
  subtype4                                                          52
D2V5, multiclass
D2V6, binary
          cls
clus        0  1
  subtype1  1 21
  subtype2  0 56
  subtype3  0 23
  subtype4  1 52
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   21
  subtype2    0   56
  subtype3    0   23
  subtype4    1   52
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        0        1
  YES       21       56       23       52
D2V7, continuous
D2V8, continuous
          vv
clus       M0 M1
  subtype1 21  1
  subtype2 54  0
  subtype3 21  2
  subtype4 50  1
D2V9, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       21       54       21       50
  M1        1        0        2        1
          vv
clus       N0 N1 N2 N3
  subtype1 17  2  3  0
  subtype2 30 18  5  3
  subtype3 13  8  1  1
  subtype4 36 12  4  1
D2V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 21  0  0  0
  subtype2 51  1  1  1
  subtype3 22  0  1  0
  subtype4 45  2  0  4
D2V11, multiclass
D2V12, continuous
          vv
clus       STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB STAGE IV
  subtype1        9        4         0         2          4          2        1
  subtype2        2       25         4        10          6          9        0
  subtype3        3       10         1         4          1          2        2
  subtype4        6       22         2        11          8          2        1
D2V13, multiclass

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 60 52
  subtype2 70 30
  subtype3 73 40
subtype1 subtype2 subtype3 
     112      100      113 
subtype1 subtype2 subtype3 
      52       30       40 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 
       12.16         4.47        90.51        27.16       115.59        60.89 
TCGA-21-1078 TCGA-21-5784 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       15.55        29.85        19.99        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
        1.74        27.02        48.82        48.33        24.13         0.56 
TCGA-22-4605 TCGA-22-4609 TCGA-22-5472 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       32.02         9.53        64.90        54.28        71.34        79.20 
TCGA-22-5489 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       62.86       173.79       141.34        54.44        10.98        19.76 
TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.50        32.84        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-39-5011 
       14.07         3.95         0.39         6.54         7.46        47.80 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 
       68.58        55.17        70.03         1.71         1.94        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-5668 
       15.58        17.88        17.06        18.28        13.12         8.48 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-52-7622 TCGA-52-7811 
        6.02         5.42         3.78         6.64        17.79         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-8504 TCGA-56-8624 
       27.45         0.10         1.02         0.99         5.82         1.18 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 TCGA-60-2712 TCGA-60-2714 
        3.58        12.23        37.94        49.48         9.01        16.83 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2725 TCGA-66-2734 TCGA-66-2737 
       35.34        38.83         3.16        23.64        43.10         2.01 
TCGA-66-2755 TCGA-66-2765 TCGA-66-2767 TCGA-66-2773 TCGA-66-2778 TCGA-66-2783 
        0.92         2.01         2.01         3.02        19.00        24.95 
TCGA-66-2788 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-7138 TCGA-77-7335 
       22.98         6.64         6.94         3.12        11.18        70.09 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
        6.51        86.76        12.59        39.09        17.69       104.09 
TCGA-77-8144 TCGA-77-8145 TCGA-85-6561 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 
       27.39         6.97         0.79         0.33         0.85         1.97 
TCGA-85-A50M TCGA-90-6837 TCGA-90-A4ED TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 
        0.62         1.35         8.02         2.70         4.01         2.27 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8023 TCGA-L3-A4E7 
        6.90         3.78        10.13         1.15 

$subtype2
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       81.07        46.52        11.34        59.51        28.34        24.92 
TCGA-18-4083 TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        6.15         3.02        46.88        99.16        70.13        34.78 
TCGA-21-1079 TCGA-21-5786 TCGA-22-0944 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 
       31.69        21.73         7.33        38.17        13.12        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-33-4532 TCGA-33-4533 
       31.69        63.52        14.60        44.22        82.98       114.05 
TCGA-33-4538 TCGA-33-4586 TCGA-34-2596 TCGA-34-2605 TCGA-34-5231 TCGA-34-5240 
       97.94        14.07         2.63        28.96        50.24         7.73 
TCGA-34-5927 TCGA-34-7107 TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 
       22.95         1.08         7.82        74.07        44.71        60.76 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6143 TCGA-43-7657 
       27.35        35.64         0.79        11.57         7.00         1.58 
TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
       66.51         9.96         0.95         0.39         0.39         2.07 
TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-A4BX TCGA-56-A4BY TCGA-60-2698 
        0.99         0.85         0.20         1.51         0.99        10.22 
TCGA-60-2708 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 TCGA-66-2758 TCGA-66-2759 
       68.45        24.10        11.77        21.07        20.98        25.02 
TCGA-66-2766 TCGA-66-2770 TCGA-66-2777 TCGA-66-2781 TCGA-66-2787 TCGA-66-2791 
        1.02        23.01         2.01         3.98        40.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-77-6843 
       30.02        54.08         4.01        49.05         2.73        73.08 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 
       23.28        89.95        20.78         0.49        42.25         0.16 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 
       53.95        37.81        53.92         9.63        54.41         0.33 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        1.12         0.59         1.61         0.53         1.41         1.18 
TCGA-85-8277 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7341 TCGA-92-8064 TCGA-94-7943 
        0.36         0.59        10.88         3.48         5.26         4.70 
TCGA-96-7545 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
       43.50         7.30        14.76         3.02 

$subtype3
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       79.46         4.80        13.02         1.61        43.76         2.79 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5787 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4601 TCGA-22-4607 
       10.82        14.10        20.45        35.08        34.75        19.30 
TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
        0.79        11.74        18.84        30.08        56.32        16.60 
TCGA-33-4547 TCGA-33-4582 TCGA-33-6738 TCGA-34-2600 TCGA-34-2609 TCGA-34-5928 
       43.10       103.53        26.99        61.61        31.23         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         8.09         6.81         0.39         3.39 
TCGA-39-5029 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6770 TCGA-43-7656 
       24.33        18.08         8.78        18.05         2.79         6.97 
TCGA-43-8116 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-6545 
        6.35         0.59         5.42        30.31        28.93         2.04 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8626 TCGA-56-8628 
        0.43         1.45         1.32         0.03         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-60-2695 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
        1.12         0.99        15.55        96.82        82.19        21.70 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2719 TCGA-60-2721 TCGA-60-2723 
       55.40        29.19        47.87        30.61        26.07        22.78 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
        1.22        16.96         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2780 
        0.99         0.99         2.01         7.07        19.00        12.03 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 
       12.00         1.94        25.97         4.04        22.98        10.06 
TCGA-68-8250 TCGA-77-6842 TCGA-77-6844 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
        8.02        29.56        75.09       106.95        46.78        15.75 
TCGA-77-8130 TCGA-77-8140 TCGA-77-8143 TCGA-77-8154 TCGA-85-6560 TCGA-85-7699 
       82.92        11.54        26.40        35.90         0.36         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 
        1.15         1.25         1.97         0.46         0.43         1.45 
TCGA-85-8288 TCGA-85-A4QR TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-94-7033 
        1.78         0.82         1.55         2.93         3.29         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-98-8021 TCGA-98-8022 
        0.16        39.88         6.18        13.58         7.33 

subtype1 subtype2 subtype3 
    0.10     0.16     0.03 
subtype1 subtype2 subtype3 
  173.79   114.05   122.43 
subtype1 subtype2 subtype3 
  12.855   13.595    9.300 
[1] "0.1 - 173.8 (12.9)" "0.2 - 114.0 (13.6)" "0.0 - 122.4 (9.3)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[289] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[325] "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[289] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[325] "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[289] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[325] "subtype2"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 39 82
  subtype2 16 88
  subtype3 28 92
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   82
  subtype2   16   88
  subtype3   28   92
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       16       28
  MALE         82       88       92
D3V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     0
  subtype2                                     4
  subtype3                                     3
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      1
  subtype2                                      1
  subtype3                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       1
  subtype2                                       0
  subtype3                                       0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                         119
  subtype2                                                          99
  subtype3                                                         117
D3V5, multiclass
D3V6, binary
          cls
clus         0   1
  subtype1   6 115
  subtype2   3 101
  subtype3   3 117
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6  115
  subtype2    3  101
  subtype3    3  117
     clus
vv    subtype1 subtype2 subtype3
  NO         6        3        3
  YES      115      101      117
D3V7, continuous
D3V8, continuous
          vv
clus        M0  M1  MX
  subtype1 101   1  17
  subtype2  88   2  12
  subtype3 104   1  13
D3V9, multiclass
          vv
clus       N0 N1 N2 N3 NX
  subtype1 81 24 12  3  1
  subtype2 58 37  7  1  1
  subtype3 77 33  9  1  0
D3V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 92  2  2  8
  subtype2 82  2  1  6
  subtype3 96  2  1  3
D3V11, multiclass
D3V12, continuous
          vv
clus       STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  subtype1       21       42        0        15        19         15          6
  subtype2       11       36        1        13        19         14          8
  subtype3       24       39        0         9        23         16          6
          vv
clus       STAGE IV
  subtype1        1
  subtype2        2
  subtype3        1
D3V13, multiclass

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 40 31
  subtype2 43 23
  subtype3 36 17
subtype1 subtype2 subtype3 
      71       66       53 
subtype1 subtype2 subtype3 
      31       23       17 
$subtype1
TCGA-18-3417 TCGA-21-5784 TCGA-21-5787 TCGA-22-4605 TCGA-22-4609 TCGA-22-5481 
       24.92        29.85        10.82        32.02         9.53        79.20 
TCGA-22-5489 TCGA-33-4566 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-5232 
       62.86       173.79        10.98        19.76        26.99        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5928 TCGA-39-5011 TCGA-39-5021 
       32.68         9.04        14.07         5.52        47.80        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 TCGA-39-5039 
       55.17        70.03         1.71         1.94        36.39        17.88 
TCGA-39-5040 TCGA-43-5668 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       17.06         8.48         6.02         5.42         3.78         6.97 
TCGA-43-7658 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       66.51         8.75        27.45         0.10         2.04         1.02 
TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        1.18         0.56         0.53        12.23        96.82        37.94 
TCGA-60-2709 TCGA-68-7756 TCGA-68-7757 TCGA-77-6842 TCGA-77-7138 TCGA-77-8007 
       49.48         6.64         6.94        29.56        11.18         6.51 
TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8146 TCGA-77-8156 
       86.76        12.59        39.09        17.69        71.77         0.33 
TCGA-85-6560 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 TCGA-85-8287 TCGA-90-6837 
        0.36         0.33         0.85         1.97         1.45         1.35 
TCGA-90-A4EE TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-8169 
       10.88         4.01         2.27         2.86         0.16         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        6.90         3.78         7.33        10.13         1.15 

$subtype2
TCGA-18-4721 TCGA-18-5592 TCGA-21-5783 TCGA-21-5786 TCGA-22-4599 TCGA-22-4601 
       90.51         3.02        88.08        21.73        38.17        34.75 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       11.77        31.69        63.52        14.60        44.22        54.28 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4582 TCGA-33-4583 
       11.74        18.84        30.08        56.32       103.53       141.34 
TCGA-33-4586 TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 
       14.07         7.73         1.08        74.07        44.71        60.76 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-6770 TCGA-43-7657 TCGA-43-8115 
       27.35        35.64         0.79         2.79         1.58         6.64 
TCGA-46-6025 TCGA-51-6867 TCGA-52-7622 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        0.95        60.99        17.79         0.99         1.45         0.85 
TCGA-56-7730 TCGA-56-8504 TCGA-56-8629 TCGA-68-7755 TCGA-77-6843 TCGA-77-6845 
        0.20         5.82         1.12         2.73        73.08        23.28 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8009 
       20.78         0.49        42.25        70.09         0.16        53.95 
TCGA-77-8128 TCGA-77-8133 TCGA-77-8144 TCGA-77-8150 TCGA-85-6561 TCGA-85-6798 
       37.81        53.92        27.39        54.41         0.79         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        0.59         1.61         1.25         0.53         1.41         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-90-7769 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 
        0.43         0.36         0.59         3.48         5.26        43.50 

$subtype3
TCGA-18-5595 TCGA-21-5782 TCGA-22-4593 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 
       27.16        31.63        35.08        64.90         0.79        71.34 
TCGA-22-5492 TCGA-33-4587 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       16.60        54.44        50.24        10.82        22.95         4.96 
TCGA-37-5819 TCGA-39-5029 TCGA-39-5035 TCGA-43-5670 TCGA-43-6143 TCGA-43-8116 
        3.39        24.33        15.58        18.05         7.00         6.35 
TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 
        0.59         5.42        30.31         0.99         0.43         1.32 
TCGA-56-7822 TCGA-68-8250 TCGA-68-8251 TCGA-77-6844 TCGA-77-7139 TCGA-77-7337 
        0.03         8.02         3.12        75.09        89.95       106.95 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       46.78        15.75        82.92       104.09        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 
        6.97         9.63        35.90         0.03         1.15         1.97 
TCGA-85-8071 TCGA-85-8288 TCGA-85-A4QR TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.46         1.78         0.82         1.55         2.93         3.29 
TCGA-90-A4ED TCGA-92-7340 TCGA-94-7943 TCGA-96-7544 TCGA-98-8021 
        8.02         2.70         4.70        39.88        13.58 

subtype1 subtype2 subtype3 
    0.10     0.16     0.03 
subtype1 subtype2 subtype3 
  173.79   141.34   106.95 
subtype1 subtype2 subtype3 
   9.530   14.335    9.630 
[1] "0.1 - 173.8 (9.5)"  "0.2 - 141.3 (14.3)" "0.0 - 107.0 (9.6)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[175] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[175] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[175] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 20 56
  subtype2 15 56
  subtype3 13 43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   56
  subtype2   15   56
  subtype3   13   43
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       15       13
  MALE         56       56       43
D4V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     0
  subtype2                                     2
  subtype3                                     2
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      0
  subtype2                                      1
  subtype3                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       0
  subtype2                                       0
  subtype3                                       1
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          76
  subtype2                                                          68
  subtype3                                                          53
D4V5, multiclass
D4V6, binary
          cls
clus        0  1
  subtype1  5 71
  subtype2  2 69
  subtype3  3 53
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   71
  subtype2    2   69
  subtype3    3   53
     clus
vv    subtype1 subtype2 subtype3
  NO         5        2        3
  YES       71       69       53
D4V7, continuous
D4V8, continuous
          vv
clus       M0 M1 MX
  subtype1 57  1 18
  subtype2 61  0 10
  subtype3 45  0  9
D4V9, multiclass
          vv
clus       N0 N1 N2 NX
  subtype1 46 20  9  1
  subtype2 47 21  3  0
  subtype3 34 17  4  1
D4V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 50  0  0  6
  subtype2 58  1  1  3
  subtype3 34  2  1  2
D4V11, multiclass
D4V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0       17       20        0         9        16         12
  subtype2       1       12       25        1        13         8          9
  subtype3       0       12       15        0         5        12          7
          vv
clus       STAGE IIIB STAGE IV
  subtype1          0        1
  subtype2          2        0
  subtype3          3        0
D4V13, multiclass

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 41 16
  subtype2 39 30
  subtype3 29 27
subtype1 subtype2 subtype3 
      57       69       56 
subtype1 subtype2 subtype3 
      16       30       27 
$subtype1
TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-22-5483 
       90.51        99.16        60.89       122.43         8.78        18.84 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 
       62.86        82.98       173.79       103.53        14.07        26.99 
TCGA-34-2605 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-37-4133 
       28.96        50.24        10.82        22.95         4.96         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5034 
        6.81         0.39         3.39        74.07        55.17        36.39 
TCGA-39-5040 TCGA-43-2578 TCGA-43-6143 TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 
       17.06        18.08         7.00         5.42         6.97        66.51 
TCGA-46-6026 TCGA-52-7810 TCGA-52-7812 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        0.59        30.31        27.45        68.45        49.48        29.19 
TCGA-60-2714 TCGA-60-2716 TCGA-66-2727 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 
       16.83        38.83        16.96        20.98         1.02         2.01 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-77-6842 
       24.95         1.94        22.98        54.08         4.01        29.56 
TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 TCGA-77-7465 TCGA-85-7698 TCGA-85-7699 
       73.08        89.95         0.49        15.75         1.61         0.03 
TCGA-85-7950 TCGA-90-7767 TCGA-96-7544 
        1.97         2.93        39.88 

$subtype2
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1081 
        3.02        27.16       115.59        46.88        70.13         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-4607 TCGA-22-5471 
       29.85        21.73        10.82        19.99        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5492 
       64.90        63.52        44.22        54.28        71.34        16.60 
TCGA-33-4547 TCGA-33-4589 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       43.10        10.98        31.23        51.78        32.68         9.04 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3789 TCGA-37-3792 TCGA-39-5011 TCGA-39-5019 
       14.07         5.52         0.43         0.39        47.80        44.71 
TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5035 
       68.58        70.03        60.76         1.71        24.33        15.58 
TCGA-39-5037 TCGA-43-5670 TCGA-43-6770 TCGA-46-6025 TCGA-52-7811 TCGA-56-6545 
        0.79        18.05         2.79         0.95         8.75         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.02         0.43         3.58        12.23        10.22        96.82 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2768 TCGA-66-2769 
        3.16        26.07         1.22        11.77         2.01         7.07 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-77-6845 
       19.00         3.98        12.00        22.98         5.03        23.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 
      106.95         0.16        46.78         0.79         1.12         1.15 
TCGA-85-7844 TCGA-92-7340 TCGA-94-7033 
        1.25         2.70         2.86 

$subtype3
TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 TCGA-21-5782 TCGA-22-1000 TCGA-22-1011 
       15.55        31.69       119.80        31.63        14.93         1.74 
TCGA-22-4591 TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-5474 TCGA-22-5478 
       20.45         0.56        32.02         9.53        14.60         0.79 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-33-6737 TCGA-34-2596 TCGA-34-2604 
       11.74        30.08        56.32        19.76         2.63        31.50 
TCGA-34-2608 TCGA-34-7107 TCGA-37-4129 TCGA-39-5030 TCGA-39-5031 TCGA-43-2581 
       32.84         1.08         6.54         1.94        27.35        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-51-6867 TCGA-56-5897 TCGA-56-7221 TCGA-56-7730 
       11.57         8.48        60.99         0.10         0.99         0.20 
TCGA-60-2695 TCGA-60-2704 TCGA-60-2706 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       15.55        37.94        82.19        55.40         9.01        47.87 
TCGA-60-2719 TCGA-60-2725 TCGA-66-2737 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
       30.61        23.64         2.01        23.01         3.02         2.01 
TCGA-66-2800 TCGA-68-7756 TCGA-77-6844 TCGA-77-7142 TCGA-77-7335 TCGA-85-6560 
       49.05         6.64        75.09        42.25        70.09         0.36 
TCGA-85-7696 TCGA-85-7697 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-94-7557 
        0.59         0.33         1.35         1.55         0.59         0.16 
TCGA-94-7943 TCGA-98-7454 
        4.70         3.78 

subtype1 subtype2 subtype3 
    0.03     0.16     0.10 
subtype1 subtype2 subtype3 
  173.79   115.59   119.80 
subtype1 subtype2 subtype3 
   22.95    14.07    12.43 
[1] "0.0 - 173.8 (22.9)" "0.2 - 115.6 (14.1)" "0.1 - 119.8 (12.4)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 12 48
  subtype2 17 56
  subtype3 20 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   48
  subtype2   17   56
  subtype3   20   42
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       12       17       20
  MALE         48       56       42
D5V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     2
  subtype2                                     0
  subtype3                                     1
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      2
  subtype2                                      0
  subtype3                                      0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          56
  subtype2                                                          73
  subtype3                                                          61
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1  4 56
  subtype2  2 71
  subtype3  3 59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   56
  subtype2    2   71
  subtype3    3   59
     clus
vv    subtype1 subtype2 subtype3
  NO         4        2        3
  YES       56       71       59
D5V7, continuous
D5V8, continuous
          vv
clus       M0 MX
  subtype1 54  6
  subtype2 67  4
  subtype3 55  6
D5V9, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       54       67       55
  MX        6        4        6
          vv
clus       N0 N1 N2 N3 NX
  subtype1 34 17  7  2  0
  subtype2 44 22  5  2  0
  subtype3 46 11  4  0  1
D5V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 42  0  2  5
  subtype2 55  4  2  4
  subtype3 48  0  0  0
D5V11, multiclass
D5V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0       10       17        0         7        11          7
  subtype2       0        7       26        0         9        17          8
  subtype3       1       10       27        1         5         7          8
          vv
clus       STAGE IIIB
  subtype1          8
  subtype2          4
  subtype3          2
D5V13, multiclass

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 34 20
  subtype2 29 15
  subtype3 28 18
  subtype4 18 20
subtype1 subtype2 subtype3 subtype4 
      54       44       46       38 
subtype1 subtype2 subtype3 subtype4 
      20       15       18       20 
$subtype1
TCGA-18-4721 TCGA-18-5592 TCGA-21-1076 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       90.51         3.02        60.89       122.43       119.80         8.78 
TCGA-21-5787 TCGA-22-1000 TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 TCGA-33-4566 
       10.82        14.93        71.34        18.84        62.86       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 TCGA-37-3792 
      103.53        10.98        32.84        50.24        10.82         0.39 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 
        7.82         6.81         0.39         3.39        74.07        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 
       24.33         1.94        36.39        15.58        17.06        13.12 
TCGA-43-6143 TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 TCGA-52-7812 TCGA-60-2695 
        7.00         5.42         6.97        66.51        27.45        15.55 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2716 TCGA-66-2785 
       49.48        29.19         9.01        16.83        38.83         1.94 
TCGA-66-2794 TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 
       54.08         4.01        29.56        73.08        89.95         0.49 
TCGA-77-7335 TCGA-77-7465 TCGA-85-7699 TCGA-85-7950 TCGA-90-7767 TCGA-96-7544 
       70.09        15.75         0.03         1.97         2.93        39.88 

$subtype2
TCGA-21-1072 TCGA-21-1075 TCGA-21-1078 TCGA-21-1079 TCGA-22-4591 TCGA-22-4605 
       99.16        70.13        15.55        31.69        20.45        32.02 
TCGA-22-4609 TCGA-22-5491 TCGA-33-4532 TCGA-33-4586 TCGA-33-6738 TCGA-34-2605 
        9.53        56.32        82.98        14.07        26.99        28.96 
TCGA-34-5929 TCGA-37-4129 TCGA-39-5022 TCGA-39-5031 TCGA-43-2578 TCGA-43-3394 
        4.96         6.54        55.17        27.35        18.08        11.57 
TCGA-43-5668 TCGA-46-6026 TCGA-51-6867 TCGA-52-7810 TCGA-56-7730 TCGA-60-2704 
        8.48         0.59        60.99        30.31         0.20        37.94 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2713 TCGA-60-2719 TCGA-66-2758 TCGA-66-2766 
       68.45        55.40        47.87        30.61        20.98         1.02 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 TCGA-66-2790 
        2.01        23.01         3.02         2.01        24.95        22.98 
TCGA-66-2800 TCGA-77-6844 TCGA-77-7142 TCGA-85-7696 TCGA-85-7698 TCGA-90-7766 
       49.05        75.09        42.25         0.59         1.61         1.55 
TCGA-94-7557 TCGA-94-7943 
        0.16         4.70 

$subtype3
TCGA-21-1070 TCGA-21-1071 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 
      115.59        46.88         9.30        31.63        21.73        19.99 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5479 TCGA-22-5492 TCGA-33-4547 TCGA-34-5232 
       19.30        31.69        54.28        16.60        43.10        51.78 
TCGA-34-5236 TCGA-34-5928 TCGA-37-3789 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        9.04         5.52         0.43        47.80        44.71        68.58 
TCGA-39-5037 TCGA-43-5670 TCGA-43-6770 TCGA-46-6025 TCGA-56-6545 TCGA-56-7222 
        0.79        18.05         2.79         0.95         2.04         0.43 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 
       10.22        96.82         3.16        26.07         1.22        11.77 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 
        2.01         7.07        19.00         3.98        12.00        22.98 
TCGA-66-2791 TCGA-77-6845 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-85-6560 
        5.03        23.28       106.95         0.16        46.78         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 TCGA-92-7340 
        0.79         1.12         1.15         2.70 

$subtype4
TCGA-18-5595 TCGA-21-5784 TCGA-22-1011 TCGA-22-4596 TCGA-22-5472 TCGA-22-5473 
       27.16        29.85         1.74         0.56        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-33-6737 
       14.60        44.22         0.79        11.74        30.08        19.76 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2609 TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 
        2.63        31.50        31.23        32.68        14.07        22.95 
TCGA-34-7107 TCGA-39-5027 TCGA-39-5028 TCGA-52-7811 TCGA-56-5897 TCGA-56-6546 
        1.08        60.76         1.71         8.75         0.10         1.02 
TCGA-56-7221 TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 TCGA-60-2725 TCGA-66-2727 
        0.99         3.58        12.23        82.19        23.64        16.96 
TCGA-66-2737 TCGA-68-7756 TCGA-85-7697 TCGA-85-7844 TCGA-90-6837 TCGA-90-7769 
        2.01         6.64         0.33         1.25         1.35         0.59 
TCGA-94-7033 TCGA-98-7454 
        2.86         3.78 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.16     0.16     0.10 
subtype1 subtype2 subtype3 subtype4 
  173.79    99.16   115.59    82.19 
subtype1 subtype2 subtype3 subtype4 
  16.945   22.995   11.885   10.245 
[1] "0.0 - 173.8 (16.9)" "0.2 - 99.2 (23.0)"  "0.2 - 115.6 (11.9)"
[4] "0.1 - 82.2 (10.2)" 
  [1] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [19] "subtype3" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [37] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype1" "subtype4" "subtype1"
 [55] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
 [61] "subtype3" "subtype2" "subtype4" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype4"
 [79] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype4" "subtype4" "subtype3" "subtype2" "subtype1"
[109] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype2"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
[175] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype2"
[181] "subtype1" "subtype4"
  [1] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [19] "subtype3" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [37] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype1" "subtype4" "subtype1"
 [55] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
 [61] "subtype3" "subtype2" "subtype4" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype4"
 [79] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype4" "subtype4" "subtype3" "subtype2" "subtype1"
[109] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype2"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
[175] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype2"
[181] "subtype1" "subtype4"
  [1] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [19] "subtype3" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [37] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype1" "subtype4" "subtype1"
 [55] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
 [61] "subtype3" "subtype2" "subtype4" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype4"
 [79] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype4" "subtype4" "subtype3" "subtype2" "subtype1"
[109] "subtype4" "subtype4" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype2"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
[175] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype2"
[181] "subtype1" "subtype4"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 15 43
  subtype2 14 34
  subtype3 11 38
  subtype4  9 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   43
  subtype2   14   34
  subtype3   11   38
  subtype4    9   31
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       15       14       11        9
  MALE         43       34       38       31
D6V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     3
  subtype2                                     0
  subtype3                                     0
  subtype4                                     0
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      2
  subtype2                                      0
  subtype3                                      0
  subtype4                                      0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          53
  subtype2                                                          48
  subtype3                                                          49
  subtype4                                                          40
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1  4 54
  subtype2  3 45
  subtype3  1 48
  subtype4  1 39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   54
  subtype2    3   45
  subtype3    1   48
  subtype4    1   39
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         4        3        1        1
  YES       54       45       48       39
D6V7, continuous
D6V8, continuous
          vv
clus       M0 MX
  subtype1 53  5
  subtype2 45  3
  subtype3 45  2
  subtype4 33  6
D6V9, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       53       45       45       33
  MX        5        3        2        6
          vv
clus       N0 N1 N2 N3 NX
  subtype1 33 16  9  0  0
  subtype2 32  9  4  2  1
  subtype3 29 17  1  2  0
  subtype4 30  8  2  0  0
D6V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 46  0  0  5
  subtype2 37  0  2  0
  subtype3 36  4  2  2
  subtype4 26  0  0  2
D6V11, multiclass
D6V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0       10       15        0         8        10          9
  subtype2       1        7       20        0         3         7          6
  subtype3       0        3       18        0         7        12          4
  subtype4       0        7       17        1         3         6          4
          vv
clus       STAGE IIIB
  subtype1          6
  subtype2          4
  subtype3          4
  subtype4          0
D6V13, multiclass

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 42 27
  subtype2 59 33
  subtype3 62 33
  subtype4 23 25
subtype1 subtype2 subtype3 subtype4 
      69       92       95       48 
subtype1 subtype2 subtype3 subtype4 
      27       33       33       25 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-3412 TCGA-21-1070 TCGA-21-1079 TCGA-21-1080 
       12.16         4.47        11.34       115.59        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4607 
        9.30       119.80         7.33         1.74        14.10        19.30 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5491 TCGA-33-4547 TCGA-33-4589 TCGA-34-5232 
        9.53        31.69        56.32        43.10        10.98        51.78 
TCGA-34-5236 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-39-5024 TCGA-39-5028 
        9.04        14.07         3.95         0.43        70.03         1.71 
TCGA-39-5029 TCGA-43-6771 TCGA-52-7811 TCGA-56-5897 TCGA-56-7221 TCGA-56-7579 
       24.33         5.42         8.75         0.10         0.99         1.45 
TCGA-56-7822 TCGA-56-8504 TCGA-60-2707 TCGA-60-2708 TCGA-60-2716 TCGA-60-2721 
        0.03         5.82        21.70        68.45        38.83        26.07 
TCGA-60-2724 TCGA-66-2734 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        1.22        43.10        25.02         0.99         2.01         2.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2788 TCGA-77-6844 TCGA-77-7138 
       19.00        19.00        12.03        22.98        75.09        11.18 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 
       70.09       106.95        46.78        86.76        82.92        12.59 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8154 TCGA-85-7697 TCGA-85-7843 
       26.40        27.39         6.97        35.90         0.33         1.15 
TCGA-85-8049 TCGA-85-8071 TCGA-90-6837 TCGA-90-7766 TCGA-92-7340 TCGA-92-8065 
        1.97         0.46         1.35         1.55         2.70         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-8170 
        2.86        39.88         6.90 

$subtype2
TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-4086 
       81.07        46.52        59.51        28.34         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4613 
       60.89        34.78        38.17        34.75        13.12        11.77 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60        44.22        54.28        11.74        30.08 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-5240 
       82.98        97.94       141.34        14.07         2.63         7.73 
TCGA-34-7107 TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        1.08         7.82        74.07        44.71        68.58        55.17 
TCGA-39-5027 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-46-3768 
       60.76        35.64         0.79        11.57         2.79         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-51-6867 TCGA-52-7622 
        0.95         0.39         0.39         2.07        60.99        17.79 
TCGA-56-7582 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2722 TCGA-60-2723 
        0.85        49.48        55.40        29.19        24.10        22.78 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 TCGA-66-2766 TCGA-66-2770 TCGA-66-2787 
       16.96         2.01        20.98         1.02        23.01        40.01 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        54.08         4.01        49.05         2.73 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       73.08        23.28        89.95        20.78         0.49        42.25 
TCGA-77-7338 TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 TCGA-77-8150 TCGA-77-8156 
        0.16        53.95        37.81        53.92        54.41         0.33 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7844 TCGA-85-8052 
        0.79         1.12         0.59         1.61         1.25         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-90-7769 TCGA-92-7341 
        1.41         1.18         0.43         0.36         0.59         3.48 
TCGA-92-8064 TCGA-96-7545 
        5.26        43.50 

$subtype3
TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-21-1078 
       79.46         4.80        13.02        24.92         1.61        15.55 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-22-0940 TCGA-22-1016 
        8.78        31.63        88.08        21.73        19.99        27.02 
TCGA-22-4593 TCGA-22-4595 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       35.08        24.13         0.79        71.34        79.20        18.84 
TCGA-22-5489 TCGA-33-4533 TCGA-33-4582 TCGA-33-4587 TCGA-34-2600 TCGA-34-5231 
       62.86       114.05       103.53        54.44        61.61        50.24 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3792 TCGA-37-4129 
       10.82        22.95         5.52         4.96         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5030 
        8.09         7.46         6.81         0.39         3.39         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       27.35        36.39        15.58        13.12         8.78         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 
        7.00         6.02         6.97         6.64         6.35         0.59 
TCGA-52-7809 TCGA-52-7810 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-56-7580 
        5.42        30.31         2.04         1.02         0.99         1.32 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 
        0.56         0.53         1.12        15.55        96.82         9.01 
TCGA-60-2713 TCGA-60-2720 TCGA-60-2726 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       47.87         3.16        11.77         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2768 TCGA-66-2769 TCGA-66-2781 TCGA-66-2785 
        0.99         0.99         2.01         7.07         3.98         1.94 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-8251 TCGA-77-6842 TCGA-77-7465 
        4.04        22.98        10.06         3.12        29.56        15.75 
TCGA-77-8007 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 TCGA-77-8148 TCGA-85-6560 
        6.51        39.09       104.09        11.54         9.63         0.36 
TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8287 TCGA-85-8288 TCGA-90-7767 
        0.03         1.97         0.85         1.45         1.78         2.93 
TCGA-92-8063 TCGA-94-7557 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        4.01         0.16        13.58         7.33        10.13 

$subtype4
TCGA-18-3421 TCGA-21-5784 TCGA-21-5787 TCGA-22-1002 TCGA-22-1005 TCGA-22-1017 
       43.76        29.85        10.82         4.31        64.21        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4605 TCGA-22-5472 TCGA-22-5492 
       20.45        48.33         0.56        32.02        64.90        16.60 
TCGA-33-4566 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5234 TCGA-39-5011 
      173.79        19.76        26.99        32.84        32.68        47.80 
TCGA-39-5039 TCGA-43-2578 TCGA-43-6773 TCGA-52-7812 TCGA-56-1622 TCGA-56-7222 
       17.88        18.08         3.78        27.45        28.93         0.43 
TCGA-56-8624 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
        1.18         3.58        12.23        10.22        37.94        82.19 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2719 TCGA-60-2725 TCGA-66-2742 TCGA-66-2753 
       16.83        35.34        30.61        23.64        21.07         1.02 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-68-7756 
        3.02         2.01        12.00        24.95        25.97         6.64 
TCGA-77-8138 TCGA-77-8146 TCGA-90-7964 TCGA-94-7943 TCGA-96-8169 TCGA-98-7454 
       17.69        71.77         3.29         4.70         6.18         3.78 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.16     0.03     0.43 
subtype1 subtype2 subtype3 subtype4 
  122.43   141.34   114.05   173.79 
subtype1 subtype2 subtype3 subtype4 
  12.030   21.880    7.330   20.105 
[1] "0.0 - 122.4 (12.0)" "0.2 - 141.3 (21.9)" "0.0 - 114.0 (7.3)" 
[4] "0.4 - 173.8 (20.1)"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [37] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype4" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype4" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
 [85] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
[169] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
[193] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype4"
[211] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype3"
[217] "subtype4" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[253] "subtype4" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype1"
[301] "subtype4" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [37] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype4" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype4" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
 [85] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
[169] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
[193] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype4"
[211] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype3"
[217] "subtype4" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[253] "subtype4" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype1"
[301] "subtype4" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype3"
 [37] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [43] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [55] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype4" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype4" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
 [85] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype4" "subtype4" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype1" "subtype4" "subtype4" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
[169] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
[193] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype4" "subtype4"
[211] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype3"
[217] "subtype4" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[253] "subtype4" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype1"
[301] "subtype4" "subtype3" "subtype3" "subtype3"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 15 56
  subtype2 20 77
  subtype3 29 71
  subtype4 15 38
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   56
  subtype2   20   77
  subtype3   29   71
  subtype4   15   38
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       15       20       29       15
  MALE         56       77       71       38
D7V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     0
  subtype2                                     3
  subtype3                                     4
  subtype4                                     0
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      1
  subtype2                                      1
  subtype3                                      0
  subtype4                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       0
  subtype2                                       0
  subtype3                                       1
  subtype4                                       0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          70
  subtype2                                                          93
  subtype3                                                          95
  subtype4                                                          53
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1  2 69
  subtype2  1 96
  subtype3  4 96
  subtype4  3 50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   69
  subtype2    1   96
  subtype3    4   96
  subtype4    3   50
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         2        1        4        3
  YES       69       96       96       50
D7V7, continuous
D7V8, continuous
          vv
clus       M0 M1 MX
  subtype1 60  0  9
  subtype2 89  0  6
  subtype3 85  3 11
  subtype4 45  1  6
D7V9, multiclass
          vv
clus       N0 N1 N2 N3 NX
  subtype1 43 19  6  2  1
  subtype2 59 31  6  1  0
  subtype3 62 32  5  1  0
  subtype4 36  7  8  1  1
D7V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 53  2  2  3
  subtype2 84  2  0  4
  subtype3 80  2  1  4
  subtype4 39  0  1  5
D7V11, multiclass
D7V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0        8       29        0         4        13         11
  subtype2       1       10       39        1        10        18         11
  subtype3       0       21       26        0        10        20         12
  subtype4       0       14       16        0         5         7          8
          vv
clus       STAGE IIIB STAGE IV
  subtype1          5        0
  subtype2          7        0
  subtype3          6        3
  subtype4          1        1
D7V13, multiclass

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 62 34
  subtype2 42 20
  subtype3 82 64
subtype1 subtype2 subtype3 
      96       62      146 
subtype1 subtype2 subtype3 
      34       20       64 
$subtype1
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-22-4599 TCGA-22-4601 
       99.16        70.13        60.89        34.78        38.17        34.75 
TCGA-22-4604 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       13.12         9.53        11.77        31.69        63.52        14.60 
TCGA-22-5477 TCGA-22-5482 TCGA-22-5485 TCGA-33-4532 TCGA-33-4583 TCGA-33-4586 
       44.22        11.74        30.08        82.98       141.34        14.07 
TCGA-34-2596 TCGA-34-5240 TCGA-34-7107 TCGA-37-4133 TCGA-39-5016 TCGA-39-5021 
        2.63         7.73         1.08         7.82        74.07        68.58 
TCGA-39-5027 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-46-3768 
       60.76        35.64         0.79        11.57         2.79         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-51-6867 TCGA-52-7622 
        0.95         0.39         0.39         2.07        60.99        17.79 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8504 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.45         0.85         5.82        49.48        55.40        29.19 
TCGA-60-2713 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 
       47.87        24.10        22.78        16.96         2.01        20.98 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2787 TCGA-66-2791 
       25.02         1.02         2.01        23.01        40.01         5.03 
TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-77-6843 TCGA-77-6845 
       30.02         4.01        49.05         2.73        73.08        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7338 TCGA-77-8009 TCGA-77-8128 
       89.95        20.78         0.49         0.16        53.95        37.81 
TCGA-77-8133 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 
       53.92         9.63        54.41         0.33         0.79         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 
        0.59         1.61         1.15         1.25         0.53         1.41 
TCGA-85-8072 TCGA-85-8277 TCGA-90-7769 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 
        1.18         0.36         0.59         3.48         5.26        43.50 

$subtype2
TCGA-18-3409 TCGA-18-3410 TCGA-18-3417 TCGA-21-1083 TCGA-21-5783 TCGA-22-4591 
       79.46         4.80        24.92         8.78        88.08        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       35.08        48.33         0.79        71.34        79.20        18.84 
TCGA-22-5489 TCGA-33-4533 TCGA-33-4587 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 
       62.86       114.05        54.44        10.82        22.95         5.52 
TCGA-34-5929 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        4.96         6.54         8.09         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-43-2578 TCGA-43-3920 
        3.39         1.94        36.39        15.58        18.08         8.78 
TCGA-43-6143 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-52-7809 TCGA-56-6546 
        7.00         6.97         6.64         6.35         5.42         1.02 
TCGA-56-7223 TCGA-56-8626 TCGA-56-8629 TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 
        0.99         0.56         1.12        15.55        96.82         9.01 
TCGA-60-2720 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2790 
        3.16         2.01         0.92         0.99         0.99        22.98 
TCGA-66-2793 TCGA-68-8251 TCGA-77-6842 TCGA-77-7465 TCGA-85-6560 TCGA-85-7699 
       10.06         3.12        29.56        15.75         0.36         0.03 
TCGA-85-7950 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-7767 TCGA-98-8021 
        1.97         0.43         1.45         1.78         2.93        13.58 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

$subtype3
TCGA-18-3406 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1070 TCGA-21-1078 
       12.16        13.02         1.61        43.76       115.59        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 
       31.69       122.43         9.30       119.80        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1005 
       21.73        10.82        19.99         7.33         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4595 TCGA-22-4596 
        1.74        14.10        27.02        48.82        24.13         0.56 
TCGA-22-4605 TCGA-22-4607 TCGA-22-5472 TCGA-22-5479 TCGA-22-5491 TCGA-22-5492 
       32.02        19.30        64.90        54.28        56.32        16.60 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 
       97.94        43.10       173.79       103.53        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       26.99        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-39-5011 
        9.04        14.07         3.95         0.43         0.39        47.80 
TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       44.71        55.17        70.03         1.71        24.33        27.35 
TCGA-39-5039 TCGA-43-2581 TCGA-43-5668 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       17.88        13.12         8.48         6.02         5.42         3.78 
TCGA-46-6026 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        0.59        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-56-7822 TCGA-56-8624 
        2.04         0.99         0.43         1.32         0.03         1.18 
TCGA-56-8628 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
        0.53         3.58        12.23        10.22        37.94        82.19 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       21.70        68.45        16.83        35.34        38.83        30.61 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 
       26.07         1.22        23.64        11.77        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 
        0.99         1.02         0.99         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2794 TCGA-68-7756 TCGA-77-6844 TCGA-77-7138 TCGA-77-7142 TCGA-77-7335 
       54.08         6.64        75.09        11.18        42.25        70.09 
TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 
      106.95        46.78         6.51        86.76        82.92        12.59 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8146 TCGA-77-8154 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 
        6.97        71.77        35.90         0.33         0.85         1.97 
TCGA-85-8071 TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 
        0.46         1.35         1.55         3.29         2.70         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 
        2.27         2.86         0.16         4.70        39.88         6.18 
TCGA-96-8170 TCGA-98-7454 
        6.90         3.78 

subtype1 subtype2 subtype3 
    0.16     0.03     0.03 
subtype1 subtype2 subtype3 
  141.34   114.05   173.79 
subtype1 subtype2 subtype3 
  14.335    7.165   16.075 
[1] "0.2 - 141.3 (14.3)" "0.0 - 114.0 (7.2)"  "0.0 - 173.8 (16.1)"
  [1] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[235] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[259] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus         0   1
  subtype1  19  83
  subtype2  21  42
  subtype3  39 117
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   83
  subtype2   21   42
  subtype3   39  117
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       19       21       39
  MALE         83       42      117
D8V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     3
  subtype2                                     4
  subtype3                                     0
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      1
  subtype2                                      0
  subtype3                                      1
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       0
  subtype2                                       1
  subtype3                                       0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          98
  subtype2                                                          58
  subtype3                                                         155
D8V5, multiclass
D8V6, binary
          cls
clus         0   1
  subtype1   2 100
  subtype2   1  62
  subtype3   7 149
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  100
  subtype2    1   62
  subtype3    7  149
     clus
vv    subtype1 subtype2 subtype3
  NO         2        1        7
  YES      100       62      149
D8V7, continuous
D8V8, continuous
          vv
clus        M0  M1  MX
  subtype1  93   0   7
  subtype2  53   2   8
  subtype3 133   2  17
D8V9, multiclass
          vv
clus       N0 N1 N2 N3 NX
  subtype1 62 33  5  2  0
  subtype2 40 18  5  0  0
  subtype3 98 38 15  3  2
D8V10, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  89   2   1   3
  subtype2  52   0   0   2
  subtype3 115   4   3  11
D8V11, multiclass
D8V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       1       12       40        1         9        19         13
  subtype2       0       14       15        0         8         8         10
  subtype3       0       27       55        0        12        31         19
          vv
clus       STAGE IIIB STAGE IV
  subtype1          7        0
  subtype2          4        2
  subtype3          8        2
D8V13, multiclass

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 73 53
  subtype2 80 38
  subtype3 34 19
subtype1 subtype2 subtype3 
     126      118       53 
subtype1 subtype2 subtype3 
      53       38       19 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1075 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
        3.02        27.16        70.13        15.55        31.69       122.43 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
        8.78        31.63        29.85        21.73        10.82        19.99 
TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
        7.33         1.74        14.10        20.45        48.33        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
        0.56        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5474 TCGA-22-5480 TCGA-22-5481 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       14.60        71.34        79.20        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2604 TCGA-34-2605 TCGA-34-5241 
      141.34        14.07        10.98        31.50        28.96        14.07 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.43         0.39         8.09         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
        3.39        47.80        68.58         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64         0.79        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       18.28        18.08        13.12        11.57         8.78         8.48 
TCGA-46-3768 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-60-2695 TCGA-60-2696 
        9.96         2.07        28.93         0.10        15.55         3.58 
TCGA-60-2698 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       10.22        82.19        68.45        29.19         9.01        47.87 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       16.83        38.83        30.61         3.16        26.07        22.78 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
        1.22        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        2.01         0.92        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 
        2.01         2.01        19.00         2.01        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-77-8007 TCGA-85-7699 
       22.98        30.02        10.06         4.01         6.51         0.03 

$subtype2
TCGA-21-5783 TCGA-22-4593 TCGA-22-5478 TCGA-22-5479 TCGA-22-5483 TCGA-33-4587 
       88.08        35.08         0.79        54.28        18.84        54.44 
TCGA-33-6737 TCGA-33-6738 TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 
       19.76        26.99        50.24        51.78         9.04        10.82 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-39-5019 
       22.95         5.52         4.96         1.08         3.95        44.71 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5040 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       70.03        60.76        17.06        18.05         7.00         6.02 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-6867 TCGA-52-7809 TCGA-52-7810 
        6.35         0.95         0.59        60.99         5.42        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 
        8.75        27.45         2.04         1.02         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8504 TCGA-56-8626 TCGA-56-8628 
        1.45         1.32         0.03         5.82         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-60-2697 TCGA-60-2703 
        1.12         0.99         1.51         0.99        12.23        96.82 
TCGA-60-2704 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       37.94         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8128 
       70.09       106.95        46.78        15.75        86.76        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       35.90         0.33         0.36         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 
        1.61         1.15         1.97         0.85         1.97         1.41 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.43         1.45         1.78         1.35         1.55         2.93 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        43.50         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        6.90         3.78        13.58         7.33 

$subtype3
TCGA-18-4086 TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-22-4605 
        2.79        90.51        99.16        60.89        34.78        32.02 
TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5482 TCGA-22-5485 
        9.53        64.90        63.52        44.22        11.74        30.08 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 TCGA-34-5240 
        2.63        61.61        32.84        31.23        32.68         7.73 
TCGA-39-5022 TCGA-43-6770 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-56-7221 
       55.17         2.79         0.39         0.39        17.79         0.99 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8624 TCGA-60-2709 TCGA-60-2710 TCGA-60-2722 
        0.85         0.20         1.18        49.48        55.40        24.10 
TCGA-60-2725 TCGA-66-2737 TCGA-66-2758 TCGA-66-2770 TCGA-66-2787 TCGA-66-2791 
       23.64         2.01        20.98        23.01        40.01         5.03 
TCGA-66-2794 TCGA-66-2800 TCGA-77-6843 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 
       54.08        49.05        73.08         0.49        42.25         0.16 
TCGA-77-8009 TCGA-77-8146 TCGA-85-6798 TCGA-85-7844 TCGA-85-8052 TCGA-85-8071 
       53.95        71.77         1.12         1.25         0.53         0.46 
TCGA-85-8072 TCGA-90-7769 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        1.18         0.59        10.13         7.30         1.15 

subtype1 subtype2 subtype3 
    0.03     0.03     0.16 
subtype1 subtype2 subtype3 
  173.79   106.95    99.16 
subtype1 subtype2 subtype3 
   16.09     6.77    20.98 
[1] "0.0 - 173.8 (16.1)" "0.0 - 107.0 (6.8)"  "0.2 - 99.2 (21.0)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[181] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[217] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype3"
D9V2, continuous
D9V3, binary
          cls
clus         0   1
  subtype1  39  92
  subtype2  27 101
  subtype3  11  44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   92
  subtype2   27  101
  subtype3   11   44
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       27       11
  MALE         92      101       44
D9V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     1
  subtype2                                     2
  subtype3                                     2
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      1
  subtype2                                      1
  subtype3                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       0
  subtype2                                       1
  subtype3                                       0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                         129
  subtype2                                                         124
  subtype3                                                          53
D9V5, multiclass
D9V6, binary
          cls
clus         0   1
  subtype1   4 127
  subtype2   6 122
  subtype3   1  54
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  127
  subtype2    6  122
  subtype3    1   54
     clus
vv    subtype1 subtype2 subtype3
  NO         4        6        1
  YES      127      122       54
D9V7, continuous
D9V8, continuous
          vv
clus        M0  M1  MX
  subtype1 125   3   1
  subtype2  94   0  33
  subtype3  47   0   5
D9V9, multiclass
          vv
clus       N0 N1 N2 N3 NX
  subtype1 81 32 15  3  0
  subtype2 75 39 12  0  2
  subtype3 38 15  1  1  0
D9V10, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 119   1   2   3
  subtype2  80   2   1  11
  subtype3  47   2   0   1
D9V11, multiclass
D9V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0       19       50        0         6        22         23
  subtype2       1       23       34        1        21        25         18
  subtype3       0       10       22        0         4        10          2
          vv
clus       STAGE IIIB STAGE IV
  subtype1          8        3
  subtype2          3        0
  subtype3          6        0
D9V13, multiclass

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 54 34
  subtype2 93 57
  subtype3 40 19
subtype1 subtype2 subtype3 
      88      150       59 
subtype1 subtype2 subtype3 
      34       57       19 
$subtype1
TCGA-18-3407 TCGA-21-1075 TCGA-21-1079 TCGA-21-5782 TCGA-21-5783 TCGA-22-1012 
        4.47        70.13        31.69        31.63        88.08        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4613 TCGA-22-5478 TCGA-22-5483 
       20.45        35.08        24.13        11.77         0.79        18.84 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4582 TCGA-34-2600 TCGA-34-2604 
       56.32        82.98       114.05       103.53        61.61        31.50 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       31.23        50.24         9.04        14.07        22.95         5.52 
TCGA-37-4133 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 
        7.82        70.03        60.76        24.33        27.35         0.79 
TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       18.28        18.08        11.57         8.48        18.05         7.00 
TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-51-6867 TCGA-56-6545 TCGA-56-7223 
        6.97         6.64         6.35        60.99         2.04         0.99 
TCGA-56-7579 TCGA-56-7822 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        1.45         0.03         0.56         0.99         1.51         0.99 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2711 TCGA-60-2713 TCGA-60-2719 TCGA-60-2724 
       96.82        82.19        29.19        47.87        30.61         1.22 
TCGA-60-2725 TCGA-66-2777 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-68-7757 
       23.64         2.01         4.04        30.02        10.06         6.94 
TCGA-68-8250 TCGA-77-6842 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7463 
        8.02        29.56        75.09        89.95        20.78        46.78 
TCGA-77-8008 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       86.76        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-7697 
       27.39         6.97         9.63        54.41         0.33         0.33 
TCGA-85-7843 TCGA-85-8049 TCGA-85-8070 TCGA-85-8287 TCGA-90-7766 TCGA-92-8063 
        1.15         1.97         1.41         1.45         1.55         4.01 
TCGA-92-8065 TCGA-94-7557 TCGA-96-8169 TCGA-98-8022 
        2.27         0.16         6.18         7.33 

$subtype2
TCGA-18-3406 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16         4.80        46.52        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 
       28.34        24.92         1.61        43.76         3.02        27.16 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1083 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55       122.43         8.78        29.85        21.73        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1011 TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 
       19.99         7.33         1.74        48.33         0.56        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       13.12        19.30        64.90        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5489 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       79.20        62.86        16.60        97.94        43.10       173.79 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5232 
       54.44        10.98        19.76        26.99        32.84        51.78 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       32.68        10.82         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        0.39         8.09         6.81         0.39         3.39        47.80 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 
       44.71        68.58         1.71         1.94        36.39        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 TCGA-43-3920 TCGA-43-6647 
       35.64        17.88        17.06        13.12         8.78         6.02 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 
        5.42         3.78         1.58        66.51         9.96         0.95 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.42        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-8504 TCGA-56-8629 TCGA-60-2695 
        1.02         0.43         1.32         5.82         1.12        15.55 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 
        3.58        12.23        10.22        68.45         9.01        16.83 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       38.83         3.16        26.07        43.10        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        1.02         2.01         0.92        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2780 TCGA-66-2781 
        1.02         2.01         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 
       12.00        24.95         1.94        25.97        22.98        22.98 
TCGA-68-7756 TCGA-68-8251 TCGA-77-6845 TCGA-77-7138 TCGA-77-7335 TCGA-77-7337 
        6.64         3.12        23.28        11.18        70.09       106.95 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       15.75         6.51        37.81        82.92        12.59        53.92 
TCGA-77-8146 TCGA-77-8154 TCGA-85-6560 TCGA-85-6561 TCGA-85-7698 TCGA-85-7699 
       71.77        35.90         0.36         0.79         1.61         0.03 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8276 TCGA-85-8288 TCGA-90-6837 TCGA-90-7767 
        1.97         0.85         0.43         1.78         1.35         2.93 
TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 TCGA-94-7943 
        3.29         2.70         3.48         5.26         2.86         4.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8023 TCGA-L3-A4E7 
       39.88        43.50         6.90         3.78        10.13         1.15 

$subtype3
TCGA-18-3408 TCGA-18-4086 TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       81.07         2.79        90.51        99.16        60.89        34.78 
TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5482 
       32.02         9.53        31.69        63.52        44.22        11.74 
TCGA-22-5485 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 
       30.08       141.34        14.07         2.63        28.96         7.73 
TCGA-39-5022 TCGA-43-6770 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
       55.17         2.79         0.59         0.39         0.39         2.07 
TCGA-52-7622 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 TCGA-56-8624 TCGA-56-8628 
       17.79         0.99         0.85         0.20         1.18         0.53 
TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 
       37.94        49.48        55.40        24.10        22.78        16.96 
TCGA-66-2737 TCGA-66-2758 TCGA-66-2770 TCGA-66-2787 TCGA-66-2791 TCGA-66-2794 
        2.01        20.98        23.01        40.01         5.03        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-77-6843 TCGA-77-7141 TCGA-77-7142 
        4.01        49.05         2.73        73.08         0.49        42.25 
TCGA-77-7338 TCGA-77-8009 TCGA-85-6798 TCGA-85-7696 TCGA-85-7844 TCGA-85-8052 
        0.16        53.95         1.12         0.59         1.25         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-90-7769 TCGA-98-8021 TCGA-J1-A4AH 
        0.46         1.18         0.59        13.58         7.30 

subtype1 subtype2 subtype3 
    0.03     0.03     0.16 
subtype1 subtype2 subtype3 
  114.05   173.79   141.34 
subtype1 subtype2 subtype3 
  15.895   11.260   13.580 
[1] "0.0 - 114.0 (15.9)" "0.0 - 173.8 (11.3)" "0.2 - 141.3 (13.6)"
  [1] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[295] "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[295] "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[295] "subtype2" "subtype3" "subtype2"
D10V2, continuous
D10V3, binary
          cls
clus         0   1
  subtype1  23  69
  subtype2  39 121
  subtype3  15  47
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   69
  subtype2   39  121
  subtype3   15   47
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       23       39       15
  MALE         69      121       47
D10V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     1
  subtype2                                     2
  subtype3                                     2
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      0
  subtype2                                      2
  subtype3                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       0
  subtype2                                       1
  subtype3                                       0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          91
  subtype2                                                         155
  subtype3                                                          60
D10V5, multiclass
D10V6, binary
          cls
clus         0   1
  subtype1   5  87
  subtype2   3 157
  subtype3   3  59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   87
  subtype2    3  157
  subtype3    3   59
     clus
vv    subtype1 subtype2 subtype3
  NO         5        3        3
  YES       87      157       59
D10V7, continuous
D10V8, continuous
          vv
clus        M0  M1  MX
  subtype1  79   0  12
  subtype2 134   3  21
  subtype3  53   0   6
D10V9, multiclass
          vv
clus       N0 N1 N2 N3 NX
  subtype1 58 25  8  1  0
  subtype2 96 42 18  2  2
  subtype3 40 19  2  1  0
D10V10, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  72   1   0   4
  subtype2 124   2   1  10
  subtype3  50   2   2   1
D10V11, multiclass
D10V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       1       21       27        0         8        15         16
  subtype2       0       20       56        1        18        30         25
  subtype3       0       11       23        0         5        12          2
          vv
clus       STAGE IIIB STAGE IV
  subtype1          4        0
  subtype2          5        3
  subtype3          8        0
D10V13, multiclass

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 53 34
  subtype2 37 14
  subtype3 19 10
subtype1 subtype2 subtype3 
      87       51       29 
subtype1 subtype2 subtype3 
      34       14       10 
$subtype1
TCGA-18-5592 TCGA-18-5595 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 
        3.02        27.16        31.63        88.08        21.73        10.82 
TCGA-22-4593 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 
       35.08         0.79        71.34        79.20        18.84        62.86 
TCGA-33-4587 TCGA-33-6737 TCGA-34-5231 TCGA-34-5236 TCGA-34-5927 TCGA-34-5928 
       54.44        19.76        50.24         9.04        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-5819 TCGA-39-5024 TCGA-43-5668 
        4.96         1.08         3.95         3.39        70.03         8.48 
TCGA-43-5670 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       18.05         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        6.64         6.35         0.95         5.42        30.31        27.45 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-8504 TCGA-56-8629 
        0.43         0.99         1.45         1.32         5.82         1.12 
TCGA-56-A49D TCGA-60-2703 TCGA-68-7755 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 
        0.99        96.82         2.73         6.94         3.12        29.56 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 
       23.28        11.18        89.95        20.78        70.09       106.95 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8128 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 
       15.75         6.51        37.81        39.09       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.33         0.36         0.79         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-8070 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-7766 
        1.15         1.41         0.43         1.45         1.78         1.55 
TCGA-90-7767 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        2.86         0.16         4.70 

$subtype2
TCGA-21-5784 TCGA-22-4605 TCGA-22-4609 TCGA-22-5472 TCGA-22-5479 TCGA-22-5492 
       29.85        32.02         9.53        64.90        54.28        16.60 
TCGA-33-6738 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-39-5019 TCGA-39-5022 
       26.99        51.78        32.68        10.82        44.71        55.17 
TCGA-39-5027 TCGA-39-5040 TCGA-43-6647 TCGA-52-7622 TCGA-52-7811 TCGA-56-5897 
       60.76        17.06         6.02        17.79         8.75         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7822 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 
        2.04         1.02         0.03         1.18         0.56         0.53 
TCGA-56-A4BY TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 TCGA-68-7756 TCGA-68-8250 
        0.99        12.23        37.94        49.48         6.64         8.02 
TCGA-77-6844 TCGA-77-7142 TCGA-77-7463 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 
       75.09        42.25        46.78        86.76        82.92        12.59 
TCGA-77-8138 TCGA-77-8146 TCGA-85-7696 TCGA-85-8048 TCGA-85-8049 TCGA-90-6837 
       17.69        71.77         0.59         0.85         1.97         1.35 
TCGA-90-7964 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        3.29        39.88        43.50         6.18         6.90         3.78 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        7.33        10.13         1.15 

$subtype3
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5482 TCGA-22-5485 
       31.69        63.52        14.60        44.22        11.74        30.08 
TCGA-22-5491 TCGA-43-6143 TCGA-43-6770 TCGA-46-6026 TCGA-51-6867 TCGA-56-7221 
       56.32         7.00         2.79         0.59        60.99         0.99 
TCGA-56-7582 TCGA-56-7730 TCGA-56-A4BX TCGA-77-6843 TCGA-77-7141 TCGA-77-7338 
        0.85         0.20         1.51        73.08         0.49         0.16 
TCGA-77-8009 TCGA-77-8133 TCGA-85-6798 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 
       53.95        53.92         1.12         1.25         1.97         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-90-7769 TCGA-98-8021 TCGA-J1-A4AH 
        0.46         1.18         0.59        13.58         7.30 

subtype1 subtype2 subtype3 
    0.03     0.03     0.16 
subtype1 subtype2 subtype3 
  106.95    86.76    73.08 
subtype1 subtype2 subtype3 
    6.51    12.23     2.79 
[1] "0.0 - 107.0 (6.5)" "0.0 - 86.8 (12.2)" "0.2 - 73.1 (2.8)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
D11V2, continuous
D11V3, binary
          cls
clus        0  1
  subtype1 21 72
  subtype2 13 42
  subtype3  4 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   72
  subtype2   13   42
  subtype3    4   26
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       13        4
  MALE         72       42       26
D11V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     1
  subtype2                                     0
  subtype3                                     1
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      1
  subtype2                                      0
  subtype3                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       1
  subtype2                                       0
  subtype3                                       0
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          90
  subtype2                                                          55
  subtype3                                                          29
D11V5, multiclass
D11V6, binary
          cls
clus        0  1
  subtype1  3 90
  subtype2  4 51
  subtype3  2 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   90
  subtype2    4   51
  subtype3    2   28
     clus
vv    subtype1 subtype2 subtype3
  NO         3        4        2
  YES       90       51       28
D11V7, continuous
D11V8, continuous
          vv
clus       M0 MX
  subtype1 72 20
  subtype2 40 15
  subtype3 25  4
D11V9, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       72       40       25
  MX       20       15        4
          vv
clus       N0 N1 N2 NX
  subtype1 51 30 11  1
  subtype2 39 11  4  1
  subtype3 22  8  0  0
D11V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 63  2  0  5
  subtype2 38  0  0  4
  subtype3 21  1  2  3
D11V11, multiclass
D11V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0       15       21        1        17        20         16
  subtype2       0       14       21        0         3         8          7
  subtype3       1        5       11        0         5         4          1
          vv
clus       STAGE IIIB
  subtype1          2
  subtype2          1
  subtype3          2
D11V13, multiclass

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2       0  1
  subtype1 45 15
  subtype2 22  9
  subtype3 42 34
subtype1 subtype2 subtype3 
      60       31       76 
subtype1 subtype2 subtype3 
      15        9       34 
$subtype1
TCGA-18-5592 TCGA-21-5784 TCGA-21-5786 TCGA-22-5472 TCGA-22-5479 TCGA-22-5492 
        3.02        29.85        21.73        64.90        54.28        16.60 
TCGA-33-6737 TCGA-33-6738 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       19.76        26.99        51.78        32.68         9.04        10.82 
TCGA-34-7107 TCGA-37-3783 TCGA-39-5019 TCGA-39-5027 TCGA-43-6647 TCGA-43-6771 
        1.08         3.95        44.71        60.76         6.02         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-46-6025 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 
        3.78         1.58         0.95        17.79        30.31         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7580 TCGA-56-7822 TCGA-56-8504 
       27.45         0.10         1.02         1.32         0.03         5.82 
TCGA-56-8629 TCGA-56-A4BY TCGA-60-2697 TCGA-68-7756 TCGA-77-7138 TCGA-77-7142 
        1.12         0.99        12.23         6.64        11.18        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 TCGA-77-8131 
       70.09       106.95        46.78        15.75        82.92        12.59 
TCGA-77-8146 TCGA-77-8154 TCGA-85-6561 TCGA-85-7698 TCGA-85-8049 TCGA-85-8276 
       71.77        35.90         0.79         1.61         1.97         0.43 
TCGA-90-6837 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 
        1.35         3.29         2.70         3.48         5.26         2.86 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-8023 TCGA-L3-A4E7 
        4.70        39.88        43.50         6.90        10.13         1.15 

$subtype2
TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5482 
       32.02         9.53        31.69        63.52        44.22        11.74 
TCGA-39-5022 TCGA-43-6770 TCGA-46-6026 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 
       55.17         2.79         0.59         0.99         0.85         0.20 
TCGA-56-8624 TCGA-56-8628 TCGA-60-2704 TCGA-60-2709 TCGA-68-7755 TCGA-77-6843 
        1.18         0.53        37.94        49.48         2.73        73.08 
TCGA-77-7141 TCGA-77-7338 TCGA-77-8009 TCGA-85-6798 TCGA-85-7696 TCGA-85-7844 
        0.49         0.16        53.95         1.12         0.59         1.25 
TCGA-85-7950 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-90-7769 TCGA-98-8021 
        1.97         0.53         0.46         1.18         0.59        13.58 
TCGA-J1-A4AH 
        7.30 

$subtype3
TCGA-18-5595 TCGA-21-5782 TCGA-21-5783 TCGA-21-5787 TCGA-22-4593 TCGA-22-5474 
       27.16        31.63        88.08        10.82        35.08        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
        0.79        71.34        79.20        18.84        30.08        62.86 
TCGA-22-5491 TCGA-33-4587 TCGA-34-5231 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       56.32        54.44        50.24        22.95         5.52         4.96 
TCGA-37-5819 TCGA-39-5024 TCGA-39-5040 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
        3.39        70.03        17.06         8.48        18.05         7.00 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-51-6867 TCGA-52-7809 
        6.97        66.51         6.64         6.35        60.99         5.42 
TCGA-56-6545 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-8626 TCGA-56-A49D 
        2.04         0.43         0.99         1.45         0.56         0.99 
TCGA-56-A4BX TCGA-60-2703 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        1.51        96.82         6.94         8.02         3.12        29.56 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-8007 TCGA-77-8008 
       75.09        23.28        89.95        20.78         6.51        86.76 
TCGA-77-8128 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       37.81        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 
       26.40        27.39         6.97         9.63        54.41         0.33 
TCGA-85-6560 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8070 
        0.36         0.33         0.03         1.15         0.85         1.41 
TCGA-85-8287 TCGA-85-8288 TCGA-90-7766 TCGA-90-7767 TCGA-92-8063 TCGA-92-8065 
        1.45         1.78         1.55         2.93         4.01         2.27 
TCGA-94-7557 TCGA-96-8169 TCGA-98-7454 TCGA-98-8022 
        0.16         6.18         3.78         7.33 

subtype1 subtype2 subtype3 
    0.03     0.16     0.03 
subtype1 subtype2 subtype3 
  106.95    73.08   104.09 
subtype1 subtype2 subtype3 
   8.895    1.970    8.250 
[1] "0.0 - 107.0 (8.9)" "0.2 - 73.1 (2.0)"  "0.0 - 104.1 (8.2)"
  [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
D12V2, continuous
D12V3, binary
          cls
clus        0  1
  subtype1 14 53
  subtype2  4 27
  subtype3 20 60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   53
  subtype2    4   27
  subtype3   20   60
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       14        4       20
  MALE         53       27       60
D12V4, continuous
          vv
clus       LUNG BASALOID SQUAMOUS CELL CARCINOMA
  subtype1                                     0
  subtype2                                     0
  subtype3                                     2
          vv
clus       LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  subtype1                                      1
  subtype2                                      0
  subtype3                                      0
          vv
clus       LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  subtype1                                       0
  subtype2                                       0
  subtype3                                       1
          vv
clus       LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  subtype1                                                          66
  subtype2                                                          31
  subtype3                                                          77
D12V5, multiclass
D12V6, binary
          cls
clus        0  1
  subtype1  1 66
  subtype2  3 28
  subtype3  5 75
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   66
  subtype2    3   28
  subtype3    5   75
     clus
vv    subtype1 subtype2 subtype3
  NO         1        3        5
  YES       66       28       75
D12V7, continuous
D12V8, continuous
          vv
clus       M0 MX
  subtype1 47 20
  subtype2 24  6
  subtype3 66 13
D12V9, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       47       24       66
  MX       20        6       13
          vv
clus       N0 N1 N2 NX
  subtype1 42 16  7  2
  subtype2 22  9  0  0
  subtype3 48 24  8  0
D12V10, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 41  1  0  7
  subtype2 22  1  2  2
  subtype3 59  1  0  3
D12V11, multiclass
D12V12, continuous
          vv
clus       STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB STAGE IIIA
  subtype1       0       10       22        1        12        12          7
  subtype2       0        5       12        0         4         6          1
  subtype3       1       19       19        0         9        14         16
          vv
clus       STAGE IIIB
  subtype1          2
  subtype2          2
  subtype3          1
D12V13, multiclass
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V7 
                 "NUMBERPACKYEARSSMOKED" 
                                      V8 
             "YEAROFTOBACCOSMOKINGONSET" 
                                      V9 
                    "DISTANT.METASTASIS" 
                                     V10 
                 "LYMPH.NODE.METASTASIS" 
                                     V11 
             "COMPLETENESS.OF.RESECTION" 
                                     V12 
                       "TUMOR.STAGECODE" 
                                     V13 
                 "NEOPLASM.DISEASESTAGE" 
> q(save="no")
