Loading required package: survival
Loading required package: splines

Attaching package: 'Hmisc'


	The following object(s) are masked from package:survival :

	 untangle.specials 


	The following object(s) are masked from package:base :

	 format.pval,
	 round.POSIXt,
	 trunc.POSIXt,
	 units 

Warning messages:
1: In scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings,  :
  number of items read is not a multiple of the number of columns
2: In main("-L/xchip/tcga/Tools/Nozzle/v1.current", "-dLUSC-TP", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/LUSC-TP/2905506/LUSC-TP.bargraphs.png",  :
  NAs introduced by coercion
