
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/416939/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/PAAD-TP/3351702/PAAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=26, in cluster file=50, common to both=20
[1] "Reduce the number of clustering variables from 35 to 28."
[1] 28 20
[1] "Amp Peak  1(1p34.3)"
[1] 3
      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                            3                            17 
      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                            3                            17 
[1] "Amp Peak  2(1p12)"
[1] 3
      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                          3                          17 
      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                          3                          17 
[1] "Amp Peak  3(7q22.1)"
[1] 3
      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                            5                            15 
      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                            5                            15 
[1] "Amp Peak  4(8q24.21)"
[1] 3
      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                             8                             12 
      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                             8                             12 
[1] "Amp Peak  6(12p13.33)"
[1] 3
      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                              3                              17 
      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                              3                              17 
[1] "Amp Peak  7(12p12.1)"
[1] 3
      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                             3                             17 
      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                             3                             17 
[1] "Amp Peak  8(18q11.2)"
[1] 3
      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                             4                             16 
      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                             4                             16 
[1] "Amp Peak  9(20q13.2)"
[1] 3
      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                             5                             15 
      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                             5                             15 
[1] "Amp Peak 11(Xq27.1)"
[1] 3
      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                            4                            16 
      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                            4                            16 
[1] "Del Peak  1(1p36.22)"
[1] 3
      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                             3                             17 
      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                             3                             17 
[1] "Del Peak  2(1p21.2)"
[1] 3
      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                            3                            17 
      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                            3                            17 
[1] "Del Peak  4(5q14.2)"
[1] 3
      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                            5                            15 
      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                            5                            15 
[1] "Del Peak  5(6p25.2)"
[1] 3
      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                            7                            13 
      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                            7                            13 
[1] "Del Peak  6(6p22.3)"
[1] 3
      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                            8                            12 
      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                            8                            12 
[1] "Del Peak  7(6q22.33)"
[1] 3
      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                            10                             10 
      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                            10                             10 
[1] "Del Peak  9(8p23.1)"
[1] 3
      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                            7                            13 
      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                            7                            13 
[1] "Del Peak 11(9p21.3)"
[1] 3
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           10                            10 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           10                            10 
[1] "Del Peak 12(9p13.2)"
[1] 3
      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                            6                            14 
      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                            6                            14 
[1] "Del Peak 13(10q23.2)"
[1] 3
      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                             4                             16 
      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                             4                             16 
[1] "Del Peak 15(12p12.3)"
[1] 3
      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                             3                             17 
      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                             3                             17 
[1] "Del Peak 17(12q24.32)"
[1] 3
      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                              4                              16 
      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                              4                              16 
[1] "Del Peak 18(15q15.1)"
[1] 3
      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                             4                             16 
      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                             4                             16 
[1] "Del Peak 19(17p11.2)"
[1] 3
      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                             7                             13 
      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                             7                             13 
[1] "Del Peak 20(17q23.2)"
[1] 3
      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                             5                             15 
      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                             5                             15 
[1] "Del Peak 21(18q21.2)"
[1] 3
      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                            11                              9 
      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                            11                              9 
[1] "Del Peak 22(21q22.11)"
[1] 3
      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                              7                              13 
      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                              7                              13 
[1] "Del Peak 23(22q13.31)"
[1] 3
      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                              3                              17 
      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                              3                              17 
[1] "Del Peak 24(Xq21.1)"
[1] 3
      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                            3                            17 
      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                            3                            17 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "RADIATIONTHERAPY"                      
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NUMBERPACKYEARSSMOKED"                 
[13] "YEAROFTOBACCOSMOKINGONSET"             
[14] "DISTANT.METASTASIS"                    
[15] "LYMPH.NODE.METASTASIS"                 
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "TUMOR.STAGECODE"                       
[19] "NEOPLASM.DISEASESTAGE"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 20 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 
         180          239           28           20           NA            4 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
           8          369          366            8           19           30 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
          21           NA           28           15            3            5 
TCGA-HZ-8637 TCGA-HZ-8638 
          NA           90 
Variable 1:'AGE':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'NUMBERPACKYEARSSMOKED':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'DISTANT.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'LYMPH.NODE.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TUMOR.STAGECODE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "GENDER"                   
[3] "HISTOLOGICAL.TYPE"         "DISTANT.METASTASIS"       
[5] "LYMPH.NODE.METASTASIS"     "COMPLETENESS.OF.RESECTION"
[7] "NUMBER.OF.LYMPH.NODES"     "TUMOR.STAGECODE"          
[9] "NEOPLASM.DISEASESTAGE"    
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
T1 T2 T3 T4 
 2  1 16  1 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 20 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=17, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=7, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p34.3)
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P34.3) CNV        3  0
  AMP PEAK  1(1P34.3) WILD-TYPE 16  1
      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                            3                            17 
      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                            0                             1 
$`AMP PEAK  1(1P34.3) CNV`
TCGA-HZ-7289 TCGA-HZ-7925 TCGA-HZ-8637 
        7.86        12.03        66.15 

$`AMP PEAK  1(1P34.3) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 
        5.92         0.92         0.66        66.12         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13         0.26         0.62         0.99         0.69        66.15 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.92         0.49         0.10         0.16         2.96 

      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                         7.86                          0.10 
      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                        66.15                         66.15 
      AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE 
                        12.03                          0.69 
[1] "7.9 - 66.2 (12.0)" "0.1 - 66.2 (0.7)" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"AMP PEAK  1(1P34.3) WILD-TYPE"       "AMP PEAK  1(1P34.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "AMP PEAK  1(1P34.3) CNV" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "AMP PEAK  1(1P34.3) CNV" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"AMP PEAK  1(1P34.3) WILD-TYPE"       "AMP PEAK  1(1P34.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "AMP PEAK  1(1P34.3) CNV" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "AMP PEAK  1(1P34.3) CNV" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"AMP PEAK  1(1P34.3) WILD-TYPE"       "AMP PEAK  1(1P34.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "AMP PEAK  1(1P34.3) CNV" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.3) WILD-TYPE" "AMP PEAK  1(1P34.3) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "AMP PEAK  1(1P34.3) CNV" "AMP PEAK  1(1P34.3) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.3) CNV          1    2
  AMP PEAK  1(1P34.3) WILD-TYPE    9    8
        clus
vv       AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE
  FEMALE                       1                             9
  MALE                         2                             8
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  1(1P34.3) CNV                                         2
  AMP PEAK  1(1P34.3) WILD-TYPE                                  15
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  1(1P34.3) CNV                                           1
  AMP PEAK  1(1P34.3) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  1(1P34.3) CNV                                                      0
  AMP PEAK  1(1P34.3) WILD-TYPE                                                1
D1V4, multiclass
                                                  clus
vv                                                 AMP PEAK  1(1P34.3) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 AMP PEAK  1(1P34.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P34.3) CNV        0  0  3
  AMP PEAK  1(1P34.3) WILD-TYPE  3  1 13
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE
  M0                       0                             3
  M1                       0                             1
  MX                       3                            13
D1V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.3) CNV          0    3
  AMP PEAK  1(1P34.3) WILD-TYPE    8    9
    clus
vv   AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE
  N0                       0                             8
  N1                       3                             9
                               vv
clus                            R0 R1 RX
  AMP PEAK  1(1P34.3) CNV        2  0  1
  AMP PEAK  1(1P34.3) WILD-TYPE 11  5  1
D1V7, multiclass
    clus
vv   AMP PEAK  1(1P34.3) CNV AMP PEAK  1(1P34.3) WILD-TYPE
  R0                       2                            11
  R1                       0                             5
  RX                       1                             1
D1V8, continuous
D1V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  1(1P34.3) CNV              0        0         0         3         0
  AMP PEAK  1(1P34.3) WILD-TYPE        2        1         3         9         1
                               vv
clus                            STAGE IV
  AMP PEAK  1(1P34.3) CNV              0
  AMP PEAK  1(1P34.3) WILD-TYPE        1
D1V10, multiclass

Clustering(2) Variable = Amp Peak  2(1p12)
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1P12) CNV        3  0
  AMP PEAK  2(1P12) WILD-TYPE 16  1
      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                          3                          17 
      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                          0                           1 
$`AMP PEAK  2(1P12) CNV`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-HZ-8637 
       12.03         0.16        66.15 

$`AMP PEAK  2(1P12) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 
        5.92         7.86         0.92         0.66        66.12         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
       66.15         0.92         0.49         0.10         2.96 

      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                       0.16                        0.10 
      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                      66.15                       66.15 
      AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE 
                      12.03                        0.92 
[1] "0.2 - 66.2 (12.0)" "0.1 - 66.2 (0.9)" 
                 TCGA-H6-8124                  TCGA-HZ-7289 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7920                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
      "AMP PEAK  2(1P12) CNV" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"       "AMP PEAK  2(1P12) CNV" 
                 TCGA-HZ-8637                  TCGA-HZ-8638 
      "AMP PEAK  2(1P12) CNV" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-HZ-7289 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7920                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
      "AMP PEAK  2(1P12) CNV" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"       "AMP PEAK  2(1P12) CNV" 
                 TCGA-HZ-8637                  TCGA-HZ-8638 
      "AMP PEAK  2(1P12) CNV" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-HZ-7289 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7920                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
      "AMP PEAK  2(1P12) CNV" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"       "AMP PEAK  2(1P12) CNV" 
                 TCGA-HZ-8637                  TCGA-HZ-8638 
      "AMP PEAK  2(1P12) CNV" "AMP PEAK  2(1P12) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) CNV          2    1
  AMP PEAK  2(1P12) WILD-TYPE    8    9
        clus
vv       AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE
  FEMALE                     2                           8
  MALE                       1                           9
                             vv
clus                          PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  2(1P12) CNV                                         3
  AMP PEAK  2(1P12) WILD-TYPE                                  14
                             vv
clus                          PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  2(1P12) CNV                                           0
  AMP PEAK  2(1P12) WILD-TYPE                                     2
                             vv
clus                          PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  2(1P12) CNV                                                      0
  AMP PEAK  2(1P12) WILD-TYPE                                                1
D2V4, multiclass
                                                  clus
vv                                                 AMP PEAK  2(1P12) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                  3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                     0
                                                  clus
vv                                                 AMP PEAK  2(1P12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
                             vv
clus                          M0 M1 MX
  AMP PEAK  2(1P12) CNV        0  1  2
  AMP PEAK  2(1P12) WILD-TYPE  3  0 14
D2V5, multiclass
    clus
vv   AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE
  M0                     0                           3
  M1                     1                           0
  MX                     2                          14
D2V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) CNV          1    2
  AMP PEAK  2(1P12) WILD-TYPE    7   10
    clus
vv   AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE
  N0                     1                           7
  N1                     2                          10
                             vv
clus                          R0 R1 RX
  AMP PEAK  2(1P12) CNV        2  1  0
  AMP PEAK  2(1P12) WILD-TYPE 11  4  2
D2V7, multiclass
    clus
vv   AMP PEAK  2(1P12) CNV AMP PEAK  2(1P12) WILD-TYPE
  R0                     2                          11
  R1                     1                           4
  RX                     0                           2
D2V8, continuous
D2V9, continuous
                             vv
clus                          STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  2(1P12) CNV              0        0         0         2         0
  AMP PEAK  2(1P12) WILD-TYPE        2        1         3        10         1
                             vv
clus                          STAGE IV
  AMP PEAK  2(1P12) CNV              1
  AMP PEAK  2(1P12) WILD-TYPE        0
D2V10, multiclass

Clustering(3) Variable = Amp Peak  3(7q22.1)
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(7Q22.1) CNV        4  1
  AMP PEAK  3(7Q22.1) WILD-TYPE 15  0
      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                            5                            15 
      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                            1                             0 
$`AMP PEAK  3(7Q22.1) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-8636 
        5.92         7.86         0.26        66.15         0.16 

$`AMP PEAK  3(7Q22.1) WILD-TYPE`
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        0.92         0.66        66.12         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
       12.03         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.10        66.15         2.96 

      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                         0.16                          0.10 
      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                        66.15                         66.15 
      AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE 
                         5.92                          0.92 
[1] "0.2 - 66.2 (5.9)" "0.1 - 66.2 (0.9)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "AMP PEAK  3(7Q22.1) CNV"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "AMP PEAK  3(7Q22.1) CNV"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "AMP PEAK  3(7Q22.1) CNV"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  3(7Q22.1) WILD-TYPE"       "AMP PEAK  3(7Q22.1) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7Q22.1) CNV          2    3
  AMP PEAK  3(7Q22.1) WILD-TYPE    8    7
        clus
vv       AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE
  FEMALE                       2                             8
  MALE                         3                             7
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  3(7Q22.1) CNV                                         4
  AMP PEAK  3(7Q22.1) WILD-TYPE                                  13
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  3(7Q22.1) CNV                                           1
  AMP PEAK  3(7Q22.1) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  3(7Q22.1) CNV                                                      0
  AMP PEAK  3(7Q22.1) WILD-TYPE                                                1
D3V4, multiclass
                                                  clus
vv                                                 AMP PEAK  3(7Q22.1) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 AMP PEAK  3(7Q22.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(7Q22.1) CNV        1  1  3
  AMP PEAK  3(7Q22.1) WILD-TYPE  2  0 13
D3V5, multiclass
    clus
vv   AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE
  M0                       1                             2
  M1                       1                             0
  MX                       3                            13
D3V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7Q22.1) CNV          1    4
  AMP PEAK  3(7Q22.1) WILD-TYPE    7    8
    clus
vv   AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE
  N0                       1                             7
  N1                       4                             8
                               vv
clus                            R0 R1 RX
  AMP PEAK  3(7Q22.1) CNV        1  2  2
  AMP PEAK  3(7Q22.1) WILD-TYPE 12  3  0
D3V7, multiclass
    clus
vv   AMP PEAK  3(7Q22.1) CNV AMP PEAK  3(7Q22.1) WILD-TYPE
  R0                       1                            12
  R1                       2                             3
  RX                       2                             0
D3V8, continuous
D3V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  3(7Q22.1) CNV              0        0         0         4         0
  AMP PEAK  3(7Q22.1) WILD-TYPE        2        1         3         8         1
                               vv
clus                            STAGE IV
  AMP PEAK  3(7Q22.1) CNV              1
  AMP PEAK  3(7Q22.1) WILD-TYPE        0
D3V10, multiclass

Clustering(4) Variable = Amp Peak  4(8q24.21)
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(8Q24.21) CNV        7  1
  AMP PEAK  4(8Q24.21) WILD-TYPE 12  0
      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                             8                             12 
      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                             1                              0 
$`AMP PEAK  4(8Q24.21) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-8315 
        7.86         0.92         0.13        12.03        66.15         0.92 
TCGA-HZ-8636 TCGA-HZ-8637 
        0.16        66.15 

$`AMP PEAK  4(8Q24.21) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
        5.92         0.66        66.12         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.62         0.99         0.69         0.49         0.10         2.96 

      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                          0.13                           0.10 
      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                         66.15                          66.12 
      AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE 
                         4.390                          0.675 
[1] "0.1 - 66.2 (4.4)" "0.1 - 66.1 (0.7)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  4(8Q24.21) WILD-TYPE"       "AMP PEAK  4(8Q24.21) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "AMP PEAK  4(8Q24.21) CNV" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
D4V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8Q24.21) CNV          4    4
  AMP PEAK  4(8Q24.21) WILD-TYPE    6    6
        clus
vv       AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE
  FEMALE                        4                              6
  MALE                          4                              6
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  4(8Q24.21) CNV                                         7
  AMP PEAK  4(8Q24.21) WILD-TYPE                                  10
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  4(8Q24.21) CNV                                           1
  AMP PEAK  4(8Q24.21) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  4(8Q24.21) CNV                                                      0
  AMP PEAK  4(8Q24.21) WILD-TYPE                                                1
D4V4, multiclass
                                                  clus
vv                                                 AMP PEAK  4(8Q24.21) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 AMP PEAK  4(8Q24.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  AMP PEAK  4(8Q24.21) CNV        1  1  6
  AMP PEAK  4(8Q24.21) WILD-TYPE  2  0 10
D4V5, multiclass
    clus
vv   AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE
  M0                        1                              2
  M1                        1                              0
  MX                        6                             10
D4V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8Q24.21) CNV          2    6
  AMP PEAK  4(8Q24.21) WILD-TYPE    6    6
    clus
vv   AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE
  N0                        2                              6
  N1                        6                              6
                                vv
clus                             R0 R1 RX
  AMP PEAK  4(8Q24.21) CNV        4  3  1
  AMP PEAK  4(8Q24.21) WILD-TYPE  9  2  1
D4V7, multiclass
    clus
vv   AMP PEAK  4(8Q24.21) CNV AMP PEAK  4(8Q24.21) WILD-TYPE
  R0                        4                              9
  R1                        3                              2
  RX                        1                              1
D4V8, continuous
D4V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  4(8Q24.21) CNV              0        0         1         6
  AMP PEAK  4(8Q24.21) WILD-TYPE        2        1         2         6
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  4(8Q24.21) CNV               0        1
  AMP PEAK  4(8Q24.21) WILD-TYPE         1        0
D4V10, multiclass

Clustering(5) Variable = Amp Peak  6(12p13.33)
D5V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK  6(12P13.33) CNV        2  1
  AMP PEAK  6(12P13.33) WILD-TYPE 17  0
      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                              3                              17 
      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                              1                               0 
$`AMP PEAK  6(12P13.33) CNV`
TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 
        7.86         0.13        66.15 

$`AMP PEAK  6(12P13.33) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 
        5.92         0.92         0.66        66.12         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.49         0.10         0.16        66.15         2.96 

      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                           0.13                            0.10 
      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                          66.15                           66.15 
      AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE 
                           7.86                            0.92 
[1] "0.1 - 66.2 (7.9)" "0.1 - 66.2 (0.9)"
                     TCGA-H6-8124                      TCGA-HZ-7289 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK  6(12P13.33) WILD-TYPE"       "AMP PEAK  6(12P13.33) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"AMP PEAK  6(12P13.33) WILD-TYPE" "AMP PEAK  6(12P13.33) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  6(12P13.33) CNV          1    2
  AMP PEAK  6(12P13.33) WILD-TYPE    9    8
        clus
vv       AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE
  FEMALE                         1                               9
  MALE                           2                               8
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  6(12P13.33) CNV                                         2
  AMP PEAK  6(12P13.33) WILD-TYPE                                  15
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  6(12P13.33) CNV                                           1
  AMP PEAK  6(12P13.33) WILD-TYPE                                     1
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  6(12P13.33) CNV                                                      0
  AMP PEAK  6(12P13.33) WILD-TYPE                                                1
D5V4, multiclass
                                                  clus
vv                                                 AMP PEAK  6(12P13.33) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 AMP PEAK  6(12P13.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
                                 vv
clus                              M0 M1 MX
  AMP PEAK  6(12P13.33) CNV        0  0  3
  AMP PEAK  6(12P13.33) WILD-TYPE  3  1 13
D5V5, multiclass
    clus
vv   AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE
  M0                         0                               3
  M1                         0                               1
  MX                         3                              13
D5V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  6(12P13.33) CNV          0    3
  AMP PEAK  6(12P13.33) WILD-TYPE    8    9
    clus
vv   AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE
  N0                         0                               8
  N1                         3                               9
                                 vv
clus                              R0 R1 RX
  AMP PEAK  6(12P13.33) CNV        1  1  1
  AMP PEAK  6(12P13.33) WILD-TYPE 12  4  1
D5V7, multiclass
    clus
vv   AMP PEAK  6(12P13.33) CNV AMP PEAK  6(12P13.33) WILD-TYPE
  R0                         1                              12
  R1                         1                               4
  RX                         1                               1
D5V8, continuous
D5V9, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  6(12P13.33) CNV              0        0         0         3
  AMP PEAK  6(12P13.33) WILD-TYPE        2        1         3         9
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK  6(12P13.33) CNV               0        0
  AMP PEAK  6(12P13.33) WILD-TYPE         1        1
D5V10, multiclass

Clustering(6) Variable = Amp Peak  7(12p12.1)
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(12P12.1) CNV        2  1
  AMP PEAK  7(12P12.1) WILD-TYPE 17  0
      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                             3                             17 
      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                             1                              0 
$`AMP PEAK  7(12P12.1) CNV`
TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 
        0.13        66.15         0.16 

$`AMP PEAK  7(12P12.1) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 
        5.92         7.86         0.92         0.66        66.12         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.92         0.49         0.10        66.15         2.96 

      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                          0.13                           0.10 
      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                         66.15                          66.15 
      AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE 
                          0.16                           0.92 
[1] "0.1 - 66.2 (0.2)" "0.1 - 66.2 (0.9)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  7(12P12.1) WILD-TYPE"       "AMP PEAK  7(12P12.1) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"AMP PEAK  7(12P12.1) WILD-TYPE" "AMP PEAK  7(12P12.1) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(12P12.1) CNV          2    1
  AMP PEAK  7(12P12.1) WILD-TYPE    8    9
        clus
vv       AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE
  FEMALE                        2                              8
  MALE                          1                              9
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  7(12P12.1) CNV                                         3
  AMP PEAK  7(12P12.1) WILD-TYPE                                  14
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  7(12P12.1) CNV                                           0
  AMP PEAK  7(12P12.1) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  7(12P12.1) CNV                                                      0
  AMP PEAK  7(12P12.1) WILD-TYPE                                                1
D6V4, multiclass
                                                  clus
vv                                                 AMP PEAK  7(12P12.1) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 AMP PEAK  7(12P12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  AMP PEAK  7(12P12.1) CNV        0  1  2
  AMP PEAK  7(12P12.1) WILD-TYPE  3  0 14
D6V5, multiclass
    clus
vv   AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE
  M0                        0                              3
  M1                        1                              0
  MX                        2                             14
D6V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(12P12.1) CNV          1    2
  AMP PEAK  7(12P12.1) WILD-TYPE    7   10
    clus
vv   AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE
  N0                        1                              7
  N1                        2                             10
                                vv
clus                             R0 R1 RX
  AMP PEAK  7(12P12.1) CNV        1  2  0
  AMP PEAK  7(12P12.1) WILD-TYPE 12  3  2
D6V7, multiclass
    clus
vv   AMP PEAK  7(12P12.1) CNV AMP PEAK  7(12P12.1) WILD-TYPE
  R0                        1                             12
  R1                        2                              3
  RX                        0                              2
D6V8, continuous
D6V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  7(12P12.1) CNV              0        0         0         2
  AMP PEAK  7(12P12.1) WILD-TYPE        2        1         3        10
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  7(12P12.1) CNV               0        1
  AMP PEAK  7(12P12.1) WILD-TYPE         1        0
D6V10, multiclass

Clustering(7) Variable = Amp Peak  8(18q11.2)
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(18Q11.2) CNV        4  0
  AMP PEAK  8(18Q11.2) WILD-TYPE 15  1
      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                             4                             16 
      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                             0                              1 
$`AMP PEAK  8(18Q11.2) CNV`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-8636 
        5.92         0.66        12.03         0.16 

$`AMP PEAK  8(18Q11.2) WILD-TYPE`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        7.86         0.92        66.12         0.13         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.99         0.69        66.15         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.49         0.10        66.15         2.96 

      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                          0.16                           0.10 
      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                         12.03                          66.15 
      AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE 
                          3.29                           0.92 
[1] "0.2 - 12.0 (3.3)" "0.1 - 66.2 (0.9)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "AMP PEAK  8(18Q11.2) CNV" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  8(18Q11.2) WILD-TYPE"       "AMP PEAK  8(18Q11.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "AMP PEAK  8(18Q11.2) CNV" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  8(18Q11.2) WILD-TYPE"       "AMP PEAK  8(18Q11.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "AMP PEAK  8(18Q11.2) CNV" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  8(18Q11.2) WILD-TYPE"       "AMP PEAK  8(18Q11.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "AMP PEAK  8(18Q11.2) CNV" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  8(18Q11.2) WILD-TYPE"       "AMP PEAK  8(18Q11.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "AMP PEAK  8(18Q11.2) CNV" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  8(18Q11.2) WILD-TYPE"       "AMP PEAK  8(18Q11.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "AMP PEAK  8(18Q11.2) CNV" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  8(18Q11.2) WILD-TYPE"       "AMP PEAK  8(18Q11.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"AMP PEAK  8(18Q11.2) WILD-TYPE" "AMP PEAK  8(18Q11.2) WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(18Q11.2) CNV          3    1
  AMP PEAK  8(18Q11.2) WILD-TYPE    7    9
        clus
vv       AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE
  FEMALE                        3                              7
  MALE                          1                              9
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  8(18Q11.2) CNV                                         4
  AMP PEAK  8(18Q11.2) WILD-TYPE                                  13
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  8(18Q11.2) CNV                                           0
  AMP PEAK  8(18Q11.2) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  8(18Q11.2) CNV                                                      0
  AMP PEAK  8(18Q11.2) WILD-TYPE                                                1
D7V4, multiclass
                                                  clus
vv                                                 AMP PEAK  8(18Q11.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 AMP PEAK  8(18Q11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  AMP PEAK  8(18Q11.2) CNV        2  1  1
  AMP PEAK  8(18Q11.2) WILD-TYPE  1  0 15
D7V5, multiclass
    clus
vv   AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE
  M0                        2                              1
  M1                        1                              0
  MX                        1                             15
D7V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(18Q11.2) CNV          1    3
  AMP PEAK  8(18Q11.2) WILD-TYPE    7    9
    clus
vv   AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE
  N0                        1                              7
  N1                        3                              9
                                vv
clus                             R0 R1 RX
  AMP PEAK  8(18Q11.2) CNV        2  2  0
  AMP PEAK  8(18Q11.2) WILD-TYPE 11  3  2
D7V7, multiclass
    clus
vv   AMP PEAK  8(18Q11.2) CNV AMP PEAK  8(18Q11.2) WILD-TYPE
  R0                        2                             11
  R1                        2                              3
  RX                        0                              2
D7V8, continuous
D7V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  8(18Q11.2) CNV              0        0         0         3
  AMP PEAK  8(18Q11.2) WILD-TYPE        2        1         3         9
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  8(18Q11.2) CNV               0        1
  AMP PEAK  8(18Q11.2) WILD-TYPE         1        0
D7V10, multiclass

Clustering(8) Variable = Amp Peak  9(20q13.2)
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(20Q13.2) CNV        4  1
  AMP PEAK  9(20Q13.2) WILD-TYPE 15  0
      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                             5                             15 
      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                             1                              0 
$`AMP PEAK  9(20Q13.2) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8637 
        7.86         0.92         0.13        66.15        66.15 

$`AMP PEAK  9(20Q13.2) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        5.92         0.66        66.12         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.10         0.16         2.96 

      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                          0.13                           0.10 
      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                         66.15                          66.12 
      AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE 
                          7.86                           0.69 
[1] "0.1 - 66.2 (7.9)" "0.1 - 66.1 (0.7)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "AMP PEAK  9(20Q13.2) CNV" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "AMP PEAK  9(20Q13.2) CNV" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "AMP PEAK  9(20Q13.2) CNV" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "AMP PEAK  9(20Q13.2) CNV" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "AMP PEAK  9(20Q13.2) CNV" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  9(20Q13.2) WILD-TYPE"       "AMP PEAK  9(20Q13.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  9(20Q13.2) WILD-TYPE" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "AMP PEAK  9(20Q13.2) CNV" "AMP PEAK  9(20Q13.2) WILD-TYPE" 
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(20Q13.2) CNV          2    3
  AMP PEAK  9(20Q13.2) WILD-TYPE    8    7
        clus
vv       AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE
  FEMALE                        2                              8
  MALE                          3                              7
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  9(20Q13.2) CNV                                         4
  AMP PEAK  9(20Q13.2) WILD-TYPE                                  13
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  9(20Q13.2) CNV                                           1
  AMP PEAK  9(20Q13.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  9(20Q13.2) CNV                                                      0
  AMP PEAK  9(20Q13.2) WILD-TYPE                                                1
D8V4, multiclass
                                                  clus
vv                                                 AMP PEAK  9(20Q13.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 AMP PEAK  9(20Q13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  AMP PEAK  9(20Q13.2) CNV        1  0  4
  AMP PEAK  9(20Q13.2) WILD-TYPE  2  1 12
D8V5, multiclass
    clus
vv   AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE
  M0                        1                              2
  M1                        0                              1
  MX                        4                             12
D8V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(20Q13.2) CNV          0    5
  AMP PEAK  9(20Q13.2) WILD-TYPE    8    7
    clus
vv   AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE
  N0                        0                              8
  N1                        5                              7
                                vv
clus                             R0 R1 RX
  AMP PEAK  9(20Q13.2) CNV        3  1  1
  AMP PEAK  9(20Q13.2) WILD-TYPE 10  4  1
D8V7, multiclass
    clus
vv   AMP PEAK  9(20Q13.2) CNV AMP PEAK  9(20Q13.2) WILD-TYPE
  R0                        3                             10
  R1                        1                              4
  RX                        1                              1
D8V8, continuous
D8V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  9(20Q13.2) CNV              0        0         0         5
  AMP PEAK  9(20Q13.2) WILD-TYPE        2        1         3         7
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  9(20Q13.2) CNV               0        0
  AMP PEAK  9(20Q13.2) WILD-TYPE         1        1
D8V10, multiclass

Clustering(9) Variable = Amp Peak 11(Xq27.1)
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 11(XQ27.1) CNV        4  0
  AMP PEAK 11(XQ27.1) WILD-TYPE 15  1
      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                            4                            16 
      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                            0                             1 
$`AMP PEAK 11(XQ27.1) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8001 TCGA-HZ-8637 
        7.86         0.92         0.62        66.15 

$`AMP PEAK 11(XQ27.1) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        5.92         0.66        66.12         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       12.03         0.26         0.99         0.69        66.15         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.49         0.10         0.16         2.96 

      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                         0.62                          0.10 
      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                        66.15                         66.15 
      AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE 
                        4.390                         0.805 
[1] "0.6 - 66.2 (4.4)" "0.1 - 66.2 (0.8)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
"AMP PEAK 11(XQ27.1) WILD-TYPE"       "AMP PEAK 11(XQ27.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"AMP PEAK 11(XQ27.1) WILD-TYPE"       "AMP PEAK 11(XQ27.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"AMP PEAK 11(XQ27.1) WILD-TYPE"       "AMP PEAK 11(XQ27.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 11(XQ27.1) WILD-TYPE" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "AMP PEAK 11(XQ27.1) CNV" "AMP PEAK 11(XQ27.1) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(XQ27.1) CNV          1    3
  AMP PEAK 11(XQ27.1) WILD-TYPE    9    7
        clus
vv       AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE
  FEMALE                       1                             9
  MALE                         3                             7
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 11(XQ27.1) CNV                                         3
  AMP PEAK 11(XQ27.1) WILD-TYPE                                  14
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 11(XQ27.1) CNV                                           1
  AMP PEAK 11(XQ27.1) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 11(XQ27.1) CNV                                                      0
  AMP PEAK 11(XQ27.1) WILD-TYPE                                                1
D9V4, multiclass
                                                  clus
vv                                                 AMP PEAK 11(XQ27.1) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 AMP PEAK 11(XQ27.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  AMP PEAK 11(XQ27.1) CNV        1  0  3
  AMP PEAK 11(XQ27.1) WILD-TYPE  2  1 13
D9V5, multiclass
    clus
vv   AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE
  M0                       1                             2
  M1                       0                             1
  MX                       3                            13
D9V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(XQ27.1) CNV          1    3
  AMP PEAK 11(XQ27.1) WILD-TYPE    7    9
    clus
vv   AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE
  N0                       1                             7
  N1                       3                             9
                               vv
clus                            R0 R1 RX
  AMP PEAK 11(XQ27.1) CNV        3  0  1
  AMP PEAK 11(XQ27.1) WILD-TYPE 10  5  1
D9V7, multiclass
    clus
vv   AMP PEAK 11(XQ27.1) CNV AMP PEAK 11(XQ27.1) WILD-TYPE
  R0                       3                            10
  R1                       0                             5
  RX                       1                             1
D9V8, continuous
D9V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK 11(XQ27.1) CNV              0        0         0         3         1
  AMP PEAK 11(XQ27.1) WILD-TYPE        2        1         3         9         0
                               vv
clus                            STAGE IV
  AMP PEAK 11(XQ27.1) CNV              0
  AMP PEAK 11(XQ27.1) WILD-TYPE        1
D9V10, multiclass

Clustering(10) Variable = Del Peak  1(1p36.22)
D10V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.22) CNV        2  1
  DEL PEAK  1(1P36.22) WILD-TYPE 17  0
      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                             3                             17 
      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                             1                              0 
$`DEL PEAK  1(1P36.22) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 
        7.86         0.92        66.15 

$`DEL PEAK  1(1P36.22) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        5.92         0.66        66.12         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.49         0.10         0.16        66.15         2.96 

      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                          0.92                           0.10 
      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                         66.15                          66.15 
      DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE 
                          7.86                           0.69 
[1] "0.9 - 66.2 (7.9)" "0.1 - 66.2 (0.7)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK  1(1P36.22) WILD-TYPE"       "DEL PEAK  1(1P36.22) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK  1(1P36.22) CNV" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"       "DEL PEAK  1(1P36.22) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK  1(1P36.22) WILD-TYPE"       "DEL PEAK  1(1P36.22) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK  1(1P36.22) CNV" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"       "DEL PEAK  1(1P36.22) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK  1(1P36.22) WILD-TYPE"       "DEL PEAK  1(1P36.22) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK  1(1P36.22) CNV" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"       "DEL PEAK  1(1P36.22) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) CNV          0    3
  DEL PEAK  1(1P36.22) WILD-TYPE   10    7
        clus
vv       DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE
  FEMALE                        0                             10
  MALE                          3                              7
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  1(1P36.22) CNV                                         2
  DEL PEAK  1(1P36.22) WILD-TYPE                                  15
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  1(1P36.22) CNV                                           1
  DEL PEAK  1(1P36.22) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  1(1P36.22) CNV                                                      0
  DEL PEAK  1(1P36.22) WILD-TYPE                                                1
D10V4, multiclass
                                                  clus
vv                                                 DEL PEAK  1(1P36.22) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK  1(1P36.22) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.22) CNV        1  0  2
  DEL PEAK  1(1P36.22) WILD-TYPE  2  1 14
D10V5, multiclass
    clus
vv   DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE
  M0                        1                              2
  M1                        0                              1
  MX                        2                             14
D10V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) CNV          0    3
  DEL PEAK  1(1P36.22) WILD-TYPE    8    9
    clus
vv   DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE
  N0                        0                              8
  N1                        3                              9
                                vv
clus                             R0 R1 RX
  DEL PEAK  1(1P36.22) CNV        1  1  1
  DEL PEAK  1(1P36.22) WILD-TYPE 12  4  1
D10V7, multiclass
    clus
vv   DEL PEAK  1(1P36.22) CNV DEL PEAK  1(1P36.22) WILD-TYPE
  R0                        1                             12
  R1                        1                              4
  RX                        1                              1
D10V8, continuous
D10V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  1(1P36.22) CNV              0        0         0         3
  DEL PEAK  1(1P36.22) WILD-TYPE        2        1         3         9
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  1(1P36.22) CNV               0        0
  DEL PEAK  1(1P36.22) WILD-TYPE         1        1
D10V10, multiclass

Clustering(11) Variable = Del Peak  2(1p21.2)
D11V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P21.2) CNV        2  1
  DEL PEAK  2(1P21.2) WILD-TYPE 17  0
      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                            3                            17 
      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                            1                             0 
$`DEL PEAK  2(1P21.2) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 
        7.86         0.92        66.15 

$`DEL PEAK  2(1P21.2) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        5.92         0.66        66.12         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.49         0.10         0.16        66.15         2.96 

      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                         0.92                          0.10 
      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                        66.15                         66.15 
      DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE 
                         7.86                          0.69 
[1] "0.9 - 66.2 (7.9)" "0.1 - 66.2 (0.7)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
"DEL PEAK  2(1P21.2) WILD-TYPE"       "DEL PEAK  2(1P21.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  2(1P21.2) CNV" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  2(1P21.2) WILD-TYPE"       "DEL PEAK  2(1P21.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"DEL PEAK  2(1P21.2) WILD-TYPE"       "DEL PEAK  2(1P21.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  2(1P21.2) CNV" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  2(1P21.2) WILD-TYPE"       "DEL PEAK  2(1P21.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"DEL PEAK  2(1P21.2) WILD-TYPE"       "DEL PEAK  2(1P21.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  2(1P21.2) CNV" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  2(1P21.2) WILD-TYPE"       "DEL PEAK  2(1P21.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  2(1P21.2) WILD-TYPE" "DEL PEAK  2(1P21.2) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P21.2) CNV          0    3
  DEL PEAK  2(1P21.2) WILD-TYPE   10    7
        clus
vv       DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE
  FEMALE                       0                            10
  MALE                         3                             7
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  2(1P21.2) CNV                                         2
  DEL PEAK  2(1P21.2) WILD-TYPE                                  15
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  2(1P21.2) CNV                                           1
  DEL PEAK  2(1P21.2) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  2(1P21.2) CNV                                                      0
  DEL PEAK  2(1P21.2) WILD-TYPE                                                1
D11V4, multiclass
                                                  clus
vv                                                 DEL PEAK  2(1P21.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK  2(1P21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(1P21.2) CNV        1  0  2
  DEL PEAK  2(1P21.2) WILD-TYPE  2  1 14
D11V5, multiclass
    clus
vv   DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE
  M0                       1                             2
  M1                       0                             1
  MX                       2                            14
D11V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P21.2) CNV          0    3
  DEL PEAK  2(1P21.2) WILD-TYPE    8    9
    clus
vv   DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE
  N0                       0                             8
  N1                       3                             9
                               vv
clus                            R0 R1 RX
  DEL PEAK  2(1P21.2) CNV        1  1  1
  DEL PEAK  2(1P21.2) WILD-TYPE 12  4  1
D11V7, multiclass
    clus
vv   DEL PEAK  2(1P21.2) CNV DEL PEAK  2(1P21.2) WILD-TYPE
  R0                       1                            12
  R1                       1                             4
  RX                       1                             1
D11V8, continuous
D11V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  2(1P21.2) CNV              0        0         0         3         0
  DEL PEAK  2(1P21.2) WILD-TYPE        2        1         3         9         1
                               vv
clus                            STAGE IV
  DEL PEAK  2(1P21.2) CNV              0
  DEL PEAK  2(1P21.2) WILD-TYPE        1
D11V10, multiclass

Clustering(12) Variable = Del Peak  4(5q14.2)
D12V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(5Q14.2) CNV        4  1
  DEL PEAK  4(5Q14.2) WILD-TYPE 15  0
      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                            5                            15 
      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                            1                             0 
$`DEL PEAK  4(5Q14.2) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8637 
        7.86         0.92         0.13        66.15        66.15 

$`DEL PEAK  4(5Q14.2) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        5.92         0.66        66.12         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.10         0.16         2.96 

      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                         0.13                          0.10 
      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                        66.15                         66.12 
      DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE 
                         7.86                          0.69 
[1] "0.1 - 66.2 (7.9)" "0.1 - 66.1 (0.7)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  4(5Q14.2) CNV" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK  4(5Q14.2) CNV" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  4(5Q14.2) CNV" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK  4(5Q14.2) CNV" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  4(5Q14.2) CNV" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(5Q14.2) WILD-TYPE"       "DEL PEAK  4(5Q14.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(5Q14.2) WILD-TYPE" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK  4(5Q14.2) CNV" "DEL PEAK  4(5Q14.2) WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(5Q14.2) CNV          2    3
  DEL PEAK  4(5Q14.2) WILD-TYPE    8    7
        clus
vv       DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE
  FEMALE                       2                             8
  MALE                         3                             7
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  4(5Q14.2) CNV                                         4
  DEL PEAK  4(5Q14.2) WILD-TYPE                                  13
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  4(5Q14.2) CNV                                           1
  DEL PEAK  4(5Q14.2) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  4(5Q14.2) CNV                                                      0
  DEL PEAK  4(5Q14.2) WILD-TYPE                                                1
D12V4, multiclass
                                                  clus
vv                                                 DEL PEAK  4(5Q14.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK  4(5Q14.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(5Q14.2) CNV        1  0  4
  DEL PEAK  4(5Q14.2) WILD-TYPE  2  1 12
D12V5, multiclass
    clus
vv   DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE
  M0                       1                             2
  M1                       0                             1
  MX                       4                            12
D12V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(5Q14.2) CNV          0    5
  DEL PEAK  4(5Q14.2) WILD-TYPE    8    7
    clus
vv   DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE
  N0                       0                             8
  N1                       5                             7
                               vv
clus                            R0 R1 RX
  DEL PEAK  4(5Q14.2) CNV        3  1  1
  DEL PEAK  4(5Q14.2) WILD-TYPE 10  4  1
D12V7, multiclass
    clus
vv   DEL PEAK  4(5Q14.2) CNV DEL PEAK  4(5Q14.2) WILD-TYPE
  R0                       3                            10
  R1                       1                             4
  RX                       1                             1
D12V8, continuous
D12V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  4(5Q14.2) CNV              0        0         0         5         0
  DEL PEAK  4(5Q14.2) WILD-TYPE        2        1         3         7         1
                               vv
clus                            STAGE IV
  DEL PEAK  4(5Q14.2) CNV              0
  DEL PEAK  4(5Q14.2) WILD-TYPE        1
D12V10, multiclass

Clustering(13) Variable = Del Peak  5(6p25.2)
D13V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(6P25.2) CNV        7  0
  DEL PEAK  5(6P25.2) WILD-TYPE 12  1
      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                            7                            13 
      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                            0                             1 
$`DEL PEAK  5(6P25.2) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 
        5.92         7.86         0.92         0.66         0.13         0.62 
TCGA-HZ-8315 
        0.92 

$`DEL PEAK  5(6P25.2) WILD-TYPE`
TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 
       66.12         0.26        12.13        12.03         0.26         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 
        0.69        66.15         0.49         0.10         0.16        66.15 
TCGA-HZ-8638 
        2.96 

      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                         0.13                          0.10 
      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                         7.86                         66.15 
      DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE 
                         0.92                          0.99 
[1] "0.1 - 7.9 (0.9)"  "0.1 - 66.2 (1.0)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  5(6P25.2) CNV"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  5(6P25.2) CNV"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  5(6P25.2) WILD-TYPE"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "DEL PEAK  5(6P25.2) CNV" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK  5(6P25.2) CNV" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  5(6P25.2) CNV"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  5(6P25.2) CNV"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  5(6P25.2) WILD-TYPE"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "DEL PEAK  5(6P25.2) CNV" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK  5(6P25.2) CNV" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  5(6P25.2) CNV"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  5(6P25.2) CNV"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  5(6P25.2) WILD-TYPE"       "DEL PEAK  5(6P25.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "DEL PEAK  5(6P25.2) CNV" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK  5(6P25.2) CNV" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  5(6P25.2) WILD-TYPE" "DEL PEAK  5(6P25.2) WILD-TYPE" 
[1] "hr=" "1"  
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(6P25.2) CNV          4    3
  DEL PEAK  5(6P25.2) WILD-TYPE    6    7
        clus
vv       DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE
  FEMALE                       4                             6
  MALE                         3                             7
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  5(6P25.2) CNV                                         6
  DEL PEAK  5(6P25.2) WILD-TYPE                                  11
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  5(6P25.2) CNV                                           1
  DEL PEAK  5(6P25.2) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  5(6P25.2) CNV                                                      0
  DEL PEAK  5(6P25.2) WILD-TYPE                                                1
D13V4, multiclass
                                                  clus
vv                                                 DEL PEAK  5(6P25.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK  5(6P25.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(6P25.2) CNV        3  0  4
  DEL PEAK  5(6P25.2) WILD-TYPE  0  1 12
D13V5, multiclass
    clus
vv   DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE
  M0                       3                             0
  M1                       0                             1
  MX                       4                            12
D13V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(6P25.2) CNV          2    5
  DEL PEAK  5(6P25.2) WILD-TYPE    6    7
    clus
vv   DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE
  N0                       2                             6
  N1                       5                             7
                               vv
clus                            R0 R1 RX
  DEL PEAK  5(6P25.2) CNV        4  2  1
  DEL PEAK  5(6P25.2) WILD-TYPE  9  3  1
D13V7, multiclass
    clus
vv   DEL PEAK  5(6P25.2) CNV DEL PEAK  5(6P25.2) WILD-TYPE
  R0                       4                             9
  R1                       2                             3
  RX                       1                             1
D13V8, continuous
D13V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  5(6P25.2) CNV              0        0         1         5         1
  DEL PEAK  5(6P25.2) WILD-TYPE        2        1         2         7         0
                               vv
clus                            STAGE IV
  DEL PEAK  5(6P25.2) CNV              0
  DEL PEAK  5(6P25.2) WILD-TYPE        1
D13V10, multiclass

Clustering(14) Variable = Del Peak  6(6p22.3)
D14V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(6P22.3) CNV        8  0
  DEL PEAK  6(6P22.3) WILD-TYPE 11  1
      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                            8                            12 
      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                            0                             1 
$`DEL PEAK  6(6P22.3) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 
        5.92         7.86         0.92         0.66         0.13        12.03 
TCGA-HZ-8001 TCGA-HZ-8315 
        0.62         0.92 

$`DEL PEAK  6(6P22.3) WILD-TYPE`
TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
       66.12         0.26        12.13         0.26         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
       66.15         0.49         0.10         0.16        66.15         2.96 

      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                         0.13                          0.10 
      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                        12.03                         66.15 
      DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE 
                         0.92                          0.84 
[1] "0.1 - 12.0 (0.9)" "0.1 - 66.2 (0.8)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  6(6P22.3) CNV"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  6(6P22.3) CNV"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  6(6P22.3) WILD-TYPE"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  6(6P22.3) CNV"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  6(6P22.3) CNV"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  6(6P22.3) WILD-TYPE"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  6(6P22.3) CNV"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK  6(6P22.3) CNV"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  6(6P22.3) WILD-TYPE"       "DEL PEAK  6(6P22.3) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK  6(6P22.3) CNV" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  6(6P22.3) WILD-TYPE" "DEL PEAK  6(6P22.3) WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6P22.3) CNV          4    4
  DEL PEAK  6(6P22.3) WILD-TYPE    6    6
        clus
vv       DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE
  FEMALE                       4                             6
  MALE                         4                             6
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  6(6P22.3) CNV                                         7
  DEL PEAK  6(6P22.3) WILD-TYPE                                  10
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  6(6P22.3) CNV                                           1
  DEL PEAK  6(6P22.3) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  6(6P22.3) CNV                                                      0
  DEL PEAK  6(6P22.3) WILD-TYPE                                                1
D14V4, multiclass
                                                  clus
vv                                                 DEL PEAK  6(6P22.3) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK  6(6P22.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(6P22.3) CNV        3  0  5
  DEL PEAK  6(6P22.3) WILD-TYPE  0  1 11
D14V5, multiclass
    clus
vv   DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE
  M0                       3                             0
  M1                       0                             1
  MX                       5                            11
D14V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6P22.3) CNV          2    6
  DEL PEAK  6(6P22.3) WILD-TYPE    6    6
    clus
vv   DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE
  N0                       2                             6
  N1                       6                             6
                               vv
clus                            R0 R1 RX
  DEL PEAK  6(6P22.3) CNV        5  2  1
  DEL PEAK  6(6P22.3) WILD-TYPE  8  3  1
D14V7, multiclass
    clus
vv   DEL PEAK  6(6P22.3) CNV DEL PEAK  6(6P22.3) WILD-TYPE
  R0                       5                             8
  R1                       2                             3
  RX                       1                             1
D14V8, continuous
D14V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  6(6P22.3) CNV              0        0         1         6         1
  DEL PEAK  6(6P22.3) WILD-TYPE        2        1         2         6         0
                               vv
clus                            STAGE IV
  DEL PEAK  6(6P22.3) CNV              0
  DEL PEAK  6(6P22.3) WILD-TYPE        1
D14V10, multiclass

Clustering(15) Variable = Del Peak  7(6q22.33)
D15V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  7(6Q22.33) CNV        9  1
  DEL PEAK  7(6Q22.33) WILD-TYPE 10  0
      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                            10                             10 
      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                             1                              0 
$`DEL PEAK  7(6Q22.33) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 
        5.92         7.86         0.92         0.66         0.13        12.03 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.62        66.15         0.92         0.16 

$`DEL PEAK  7(6Q22.33) WILD-TYPE`
TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
       66.12         0.26        12.13         0.26         0.99         0.69 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.49         0.10        66.15         2.96 

      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                          0.13                           0.10 
      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                         66.15                          66.15 
      DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE 
                          0.92                           0.84 
[1] "0.1 - 66.2 (0.9)" "0.1 - 66.2 (0.8)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK  7(6Q22.33) CNV"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK  7(6Q22.33) CNV"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  7(6Q22.33) WILD-TYPE" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK  7(6Q22.33) WILD-TYPE" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK  7(6Q22.33) CNV"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK  7(6Q22.33) CNV"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  7(6Q22.33) WILD-TYPE" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK  7(6Q22.33) WILD-TYPE" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK  7(6Q22.33) CNV"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK  7(6Q22.33) CNV"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  7(6Q22.33) WILD-TYPE" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK  7(6Q22.33) CNV" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  7(6Q22.33) WILD-TYPE"       "DEL PEAK  7(6Q22.33) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK  7(6Q22.33) WILD-TYPE" "DEL PEAK  7(6Q22.33) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.33) CNV          5    5
  DEL PEAK  7(6Q22.33) WILD-TYPE    5    5
        clus
vv       DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE
  FEMALE                        5                              5
  MALE                          5                              5
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  7(6Q22.33) CNV                                         9
  DEL PEAK  7(6Q22.33) WILD-TYPE                                   8
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  7(6Q22.33) CNV                                           1
  DEL PEAK  7(6Q22.33) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  7(6Q22.33) CNV                                                      0
  DEL PEAK  7(6Q22.33) WILD-TYPE                                                1
D15V4, multiclass
                                                  clus
vv                                                 DEL PEAK  7(6Q22.33) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK  7(6Q22.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK  7(6Q22.33) CNV        3  1  6
  DEL PEAK  7(6Q22.33) WILD-TYPE  0  0 10
D15V5, multiclass
    clus
vv   DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE
  M0                        3                              0
  M1                        1                              0
  MX                        6                             10
D15V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.33) CNV          3    7
  DEL PEAK  7(6Q22.33) WILD-TYPE    5    5
    clus
vv   DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE
  N0                        3                              5
  N1                        7                              5
                                vv
clus                             R0 R1 RX
  DEL PEAK  7(6Q22.33) CNV        5  4  1
  DEL PEAK  7(6Q22.33) WILD-TYPE  8  1  1
D15V7, multiclass
    clus
vv   DEL PEAK  7(6Q22.33) CNV DEL PEAK  7(6Q22.33) WILD-TYPE
  R0                        5                              8
  R1                        4                              1
  RX                        1                              1
D15V8, continuous
D15V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  7(6Q22.33) CNV              0        0         1         7
  DEL PEAK  7(6Q22.33) WILD-TYPE        2        1         2         5
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  7(6Q22.33) CNV               1        1
  DEL PEAK  7(6Q22.33) WILD-TYPE         0        0
D15V10, multiclass

Clustering(16) Variable = Del Peak  9(8p23.1)
D16V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(8P23.1) CNV        6  1
  DEL PEAK  9(8P23.1) WILD-TYPE 13  0
      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                            7                            13 
      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                            1                             0 
$`DEL PEAK  9(8P23.1) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 
        5.92         7.86         0.66         0.13        12.03        66.15 
TCGA-HZ-8636 
        0.16 

$`DEL PEAK  9(8P23.1) WILD-TYPE`
TCGA-HZ-7918 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.92        66.12         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 
        0.99         0.69         0.92         0.49         0.10        66.15 
TCGA-HZ-8638 
        2.96 

      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                         0.13                          0.10 
      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                        66.15                         66.15 
      DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE 
                         5.92                          0.92 
[1] "0.1 - 66.2 (5.9)" "0.1 - 66.2 (0.9)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  9(8P23.1) CNV"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK  9(8P23.1) CNV" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  9(8P23.1) CNV"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK  9(8P23.1) CNV" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK  9(8P23.1) CNV"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK  9(8P23.1) CNV" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(8P23.1) WILD-TYPE"       "DEL PEAK  9(8P23.1) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK  9(8P23.1) WILD-TYPE" "DEL PEAK  9(8P23.1) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8P23.1) CNV          4    3
  DEL PEAK  9(8P23.1) WILD-TYPE    6    7
        clus
vv       DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE
  FEMALE                       4                             6
  MALE                         3                             7
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  9(8P23.1) CNV                                         6
  DEL PEAK  9(8P23.1) WILD-TYPE                                  11
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  9(8P23.1) CNV                                           1
  DEL PEAK  9(8P23.1) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  9(8P23.1) CNV                                                      0
  DEL PEAK  9(8P23.1) WILD-TYPE                                                1
D16V4, multiclass
                                                  clus
vv                                                 DEL PEAK  9(8P23.1) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK  9(8P23.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(8P23.1) CNV        2  1  4
  DEL PEAK  9(8P23.1) WILD-TYPE  1  0 12
D16V5, multiclass
    clus
vv   DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE
  M0                       2                             1
  M1                       1                             0
  MX                       4                            12
D16V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8P23.1) CNV          1    6
  DEL PEAK  9(8P23.1) WILD-TYPE    7    6
    clus
vv   DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE
  N0                       1                             7
  N1                       6                             6
                               vv
clus                            R0 R1 RX
  DEL PEAK  9(8P23.1) CNV        3  3  1
  DEL PEAK  9(8P23.1) WILD-TYPE 10  2  1
D16V7, multiclass
    clus
vv   DEL PEAK  9(8P23.1) CNV DEL PEAK  9(8P23.1) WILD-TYPE
  R0                       3                            10
  R1                       3                             2
  RX                       1                             1
D16V8, continuous
D16V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  9(8P23.1) CNV              0        0         0         6         0
  DEL PEAK  9(8P23.1) WILD-TYPE        2        1         3         6         1
                               vv
clus                            STAGE IV
  DEL PEAK  9(8P23.1) CNV              1
  DEL PEAK  9(8P23.1) WILD-TYPE        0
D16V10, multiclass

Clustering(17) Variable = Del Peak 11(9p21.3)
D17V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(9P21.3) CNV        9  1
  DEL PEAK 11(9P21.3) WILD-TYPE 10  0
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                           10                            10 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                            1                             0 
$`DEL PEAK 11(9P21.3) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 
        5.92         7.86         0.92         0.66         0.13        12.03 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8637 
       66.15         0.92         0.16        66.15 

$`DEL PEAK 11(9P21.3) WILD-TYPE`
TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
       66.12         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         0.49         0.10         2.96 

      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                         0.13                          0.10 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                        66.15                         66.12 
      DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE 
                        3.420                         0.655 
[1] "0.1 - 66.2 (3.4)" "0.1 - 66.1 (0.7)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 11(9P21.3) CNV"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(9P21.3) WILD-TYPE"       "DEL PEAK 11(9P21.3) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK 11(9P21.3) CNV" "DEL PEAK 11(9P21.3) WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) CNV          6    4
  DEL PEAK 11(9P21.3) WILD-TYPE    4    6
        clus
vv       DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  FEMALE                       6                             4
  MALE                         4                             6
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 11(9P21.3) CNV                                         9
  DEL PEAK 11(9P21.3) WILD-TYPE                                   8
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 11(9P21.3) CNV                                           1
  DEL PEAK 11(9P21.3) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 11(9P21.3) CNV                                                      0
  DEL PEAK 11(9P21.3) WILD-TYPE                                                1
D17V4, multiclass
                                                  clus
vv                                                 DEL PEAK 11(9P21.3) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK 11(9P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(9P21.3) CNV        3  1  6
  DEL PEAK 11(9P21.3) WILD-TYPE  0  0 10
D17V5, multiclass
    clus
vv   DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  M0                       3                             0
  M1                       1                             0
  MX                       6                            10
D17V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) CNV          2    8
  DEL PEAK 11(9P21.3) WILD-TYPE    6    4
    clus
vv   DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  N0                       2                             6
  N1                       8                             4
                               vv
clus                            R0 R1 RX
  DEL PEAK 11(9P21.3) CNV        5  4  1
  DEL PEAK 11(9P21.3) WILD-TYPE  8  1  1
D17V7, multiclass
    clus
vv   DEL PEAK 11(9P21.3) CNV DEL PEAK 11(9P21.3) WILD-TYPE
  R0                       5                             8
  R1                       4                             1
  RX                       1                             1
D17V8, continuous
D17V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 11(9P21.3) CNV              0        0         1         8         0
  DEL PEAK 11(9P21.3) WILD-TYPE        2        1         2         4         1
                               vv
clus                            STAGE IV
  DEL PEAK 11(9P21.3) CNV              1
  DEL PEAK 11(9P21.3) WILD-TYPE        0
D17V10, multiclass

Clustering(18) Variable = Del Peak 12(9p13.2)
D18V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(9P13.2) CNV        5  1
  DEL PEAK 12(9P13.2) WILD-TYPE 14  0
      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                            6                            14 
      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                            1                             0 
$`DEL PEAK 12(9P13.2) CNV`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-8637 
        5.92         0.92         0.13        66.15         0.16        66.15 

$`DEL PEAK 12(9P13.2) WILD-TYPE`
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.86         0.66        66.12         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 
        0.10         2.96 

      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                         0.13                          0.10 
      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                        66.15                         66.12 
      DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE 
                        3.420                         0.805 
[1] "0.1 - 66.2 (3.4)" "0.1 - 66.1 (0.8)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 12(9P13.2) WILD-TYPE" "DEL PEAK 12(9P13.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(9P13.2) WILD-TYPE"       "DEL PEAK 12(9P13.2) CNV" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
      "DEL PEAK 12(9P13.2) CNV" "DEL PEAK 12(9P13.2) WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
D18V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P13.2) CNV          4    2
  DEL PEAK 12(9P13.2) WILD-TYPE    6    8
        clus
vv       DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE
  FEMALE                       4                             6
  MALE                         2                             8
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 12(9P13.2) CNV                                         6
  DEL PEAK 12(9P13.2) WILD-TYPE                                  11
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 12(9P13.2) CNV                                           0
  DEL PEAK 12(9P13.2) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 12(9P13.2) CNV                                                      0
  DEL PEAK 12(9P13.2) WILD-TYPE                                                1
D18V4, multiclass
                                                  clus
vv                                                 DEL PEAK 12(9P13.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK 12(9P13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(9P13.2) CNV        2  1  3
  DEL PEAK 12(9P13.2) WILD-TYPE  1  0 13
D18V5, multiclass
    clus
vv   DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE
  M0                       2                             1
  M1                       1                             0
  MX                       3                            13
D18V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P13.2) CNV          1    5
  DEL PEAK 12(9P13.2) WILD-TYPE    7    7
    clus
vv   DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE
  N0                       1                             7
  N1                       5                             7
                               vv
clus                            R0 R1 RX
  DEL PEAK 12(9P13.2) CNV        4  2  0
  DEL PEAK 12(9P13.2) WILD-TYPE  9  3  2
D18V7, multiclass
    clus
vv   DEL PEAK 12(9P13.2) CNV DEL PEAK 12(9P13.2) WILD-TYPE
  R0                       4                             9
  R1                       2                             3
  RX                       0                             2
D18V8, continuous
D18V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 12(9P13.2) CNV              0        0         0         5         0
  DEL PEAK 12(9P13.2) WILD-TYPE        2        1         3         7         1
                               vv
clus                            STAGE IV
  DEL PEAK 12(9P13.2) CNV              1
  DEL PEAK 12(9P13.2) WILD-TYPE        0
D18V10, multiclass

Clustering(19) Variable = Del Peak 13(10q23.2)
D19V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 13(10Q23.2) CNV        3  1
  DEL PEAK 13(10Q23.2) WILD-TYPE 16  0
      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                             4                             16 
      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                             1                              0 
$`DEL PEAK 13(10Q23.2) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 
        5.92         7.86         0.92        66.15 

$`DEL PEAK 13(10Q23.2) WILD-TYPE`
TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.66        66.12         0.13         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.10         0.16        66.15         2.96 

      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                          0.92                           0.10 
      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                         66.15                          66.15 
      DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE 
                         6.890                          0.675 
[1] "0.9 - 66.2 (6.9)" "0.1 - 66.2 (0.7)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK 13(10Q23.2) CNV"       "DEL PEAK 13(10Q23.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 13(10Q23.2) CNV" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 13(10Q23.2) WILD-TYPE"       "DEL PEAK 13(10Q23.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK 13(10Q23.2) CNV"       "DEL PEAK 13(10Q23.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 13(10Q23.2) CNV" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 13(10Q23.2) WILD-TYPE"       "DEL PEAK 13(10Q23.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK 13(10Q23.2) CNV"       "DEL PEAK 13(10Q23.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 13(10Q23.2) CNV" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 13(10Q23.2) WILD-TYPE"       "DEL PEAK 13(10Q23.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 13(10Q23.2) WILD-TYPE" "DEL PEAK 13(10Q23.2) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(10Q23.2) CNV          1    3
  DEL PEAK 13(10Q23.2) WILD-TYPE    9    7
        clus
vv       DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE
  FEMALE                        1                              9
  MALE                          3                              7
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 13(10Q23.2) CNV                                         3
  DEL PEAK 13(10Q23.2) WILD-TYPE                                  14
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 13(10Q23.2) CNV                                           1
  DEL PEAK 13(10Q23.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 13(10Q23.2) CNV                                                      0
  DEL PEAK 13(10Q23.2) WILD-TYPE                                                1
D19V4, multiclass
                                                  clus
vv                                                 DEL PEAK 13(10Q23.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK 13(10Q23.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(10Q23.2) CNV        2  0  2
  DEL PEAK 13(10Q23.2) WILD-TYPE  1  1 14
D19V5, multiclass
    clus
vv   DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE
  M0                        2                              1
  M1                        0                              1
  MX                        2                             14
D19V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(10Q23.2) CNV          0    4
  DEL PEAK 13(10Q23.2) WILD-TYPE    8    8
    clus
vv   DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE
  N0                        0                              8
  N1                        4                              8
                                vv
clus                             R0 R1 RX
  DEL PEAK 13(10Q23.2) CNV        2  1  1
  DEL PEAK 13(10Q23.2) WILD-TYPE 11  4  1
D19V7, multiclass
    clus
vv   DEL PEAK 13(10Q23.2) CNV DEL PEAK 13(10Q23.2) WILD-TYPE
  R0                        2                             11
  R1                        1                              4
  RX                        1                              1
D19V8, continuous
D19V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 13(10Q23.2) CNV              0        0         0         4
  DEL PEAK 13(10Q23.2) WILD-TYPE        2        1         3         8
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 13(10Q23.2) CNV               0        0
  DEL PEAK 13(10Q23.2) WILD-TYPE         1        1
D19V10, multiclass

Clustering(20) Variable = Del Peak 15(12p12.3)
D20V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(12P12.3) CNV        3  0
  DEL PEAK 15(12P12.3) WILD-TYPE 16  1
      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                             3                             17 
      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                             0                              1 
$`DEL PEAK 15(12P12.3) CNV`
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-8636 
        7.86         0.66         0.16 

$`DEL PEAK 15(12P12.3) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        5.92         0.92        66.12         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.03         0.26         0.62         0.99         0.69        66.15 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.92         0.49         0.10        66.15         2.96 

      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                          0.16                           0.10 
      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                          7.86                          66.15 
      DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE 
                          0.66                           0.92 
[1] "0.2 - 7.9 (0.7)"  "0.1 - 66.2 (0.9)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(12P12.3) WILD-TYPE"       "DEL PEAK 15(12P12.3) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 15(12P12.3) WILD-TYPE" "DEL PEAK 15(12P12.3) WILD-TYPE" 
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(12P12.3) CNV          2    1
  DEL PEAK 15(12P12.3) WILD-TYPE    8    9
        clus
vv       DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE
  FEMALE                        2                              8
  MALE                          1                              9
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 15(12P12.3) CNV                                         2
  DEL PEAK 15(12P12.3) WILD-TYPE                                  15
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 15(12P12.3) CNV                                           1
  DEL PEAK 15(12P12.3) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 15(12P12.3) CNV                                                      0
  DEL PEAK 15(12P12.3) WILD-TYPE                                                1
D20V4, multiclass
                                                  clus
vv                                                 DEL PEAK 15(12P12.3) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK 15(12P12.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 15(12P12.3) CNV        1  1  1
  DEL PEAK 15(12P12.3) WILD-TYPE  2  0 15
D20V5, multiclass
    clus
vv   DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE
  M0                        1                              2
  M1                        1                              0
  MX                        1                             15
D20V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(12P12.3) CNV          1    2
  DEL PEAK 15(12P12.3) WILD-TYPE    7   10
    clus
vv   DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE
  N0                        1                              7
  N1                        2                             10
                                vv
clus                             R0 R1 RX
  DEL PEAK 15(12P12.3) CNV        0  2  1
  DEL PEAK 15(12P12.3) WILD-TYPE 13  3  1
D20V7, multiclass
    clus
vv   DEL PEAK 15(12P12.3) CNV DEL PEAK 15(12P12.3) WILD-TYPE
  R0                        0                             13
  R1                        2                              3
  RX                        1                              1
D20V8, continuous
D20V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 15(12P12.3) CNV              0        0         0         2
  DEL PEAK 15(12P12.3) WILD-TYPE        2        1         3        10
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 15(12P12.3) CNV               0        1
  DEL PEAK 15(12P12.3) WILD-TYPE         1        0
D20V10, multiclass

Clustering(21) Variable = Del Peak 17(12q24.32)
D21V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(12Q24.32) CNV        4  0
  DEL PEAK 17(12Q24.32) WILD-TYPE 15  1
      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                              4                              16 
      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                              0                               1 
$`DEL PEAK 17(12Q24.32) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-7926 
        5.92         7.86         0.13         0.26 

$`DEL PEAK 17(12Q24.32) WILD-TYPE`
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66        66.12         0.26        12.13        12.03 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69        66.15         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.10         0.16        66.15         2.96 

      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                           0.13                            0.10 
      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                           7.86                           66.15 
      DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE 
                           3.09                            0.92 
[1] "0.1 - 7.9 (3.1)"  "0.1 - 66.2 (0.9)"
                     TCGA-H6-8124                      TCGA-HZ-7289 
      "DEL PEAK 17(12Q24.32) CNV"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 17(12Q24.32) WILD-TYPE"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 17(12Q24.32) WILD-TYPE"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
      "DEL PEAK 17(12Q24.32) CNV"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 17(12Q24.32) WILD-TYPE"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 17(12Q24.32) WILD-TYPE"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
      "DEL PEAK 17(12Q24.32) CNV"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 17(12Q24.32) WILD-TYPE"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 17(12Q24.32) WILD-TYPE"       "DEL PEAK 17(12Q24.32) CNV" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"DEL PEAK 17(12Q24.32) WILD-TYPE" "DEL PEAK 17(12Q24.32) WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.32) CNV          2    2
  DEL PEAK 17(12Q24.32) WILD-TYPE    8    8
        clus
vv       DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE
  FEMALE                         2                               8
  MALE                           2                               8
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 17(12Q24.32) CNV                                         3
  DEL PEAK 17(12Q24.32) WILD-TYPE                                  14
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 17(12Q24.32) CNV                                           1
  DEL PEAK 17(12Q24.32) WILD-TYPE                                     1
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 17(12Q24.32) CNV                                                      0
  DEL PEAK 17(12Q24.32) WILD-TYPE                                                1
D21V4, multiclass
                                                  clus
vv                                                 DEL PEAK 17(12Q24.32) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 DEL PEAK 17(12Q24.32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
                                 vv
clus                              M0 M1 MX
  DEL PEAK 17(12Q24.32) CNV        1  0  3
  DEL PEAK 17(12Q24.32) WILD-TYPE  2  1 13
D21V5, multiclass
    clus
vv   DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE
  M0                         1                               2
  M1                         0                               1
  MX                         3                              13
D21V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.32) CNV          0    4
  DEL PEAK 17(12Q24.32) WILD-TYPE    8    8
    clus
vv   DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE
  N0                         0                               8
  N1                         4                               8
                                 vv
clus                              R0 R1 RX
  DEL PEAK 17(12Q24.32) CNV        2  0  2
  DEL PEAK 17(12Q24.32) WILD-TYPE 11  5  0
D21V7, multiclass
    clus
vv   DEL PEAK 17(12Q24.32) CNV DEL PEAK 17(12Q24.32) WILD-TYPE
  R0                         2                              11
  R1                         0                               5
  RX                         2                               0
D21V8, continuous
D21V9, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 17(12Q24.32) CNV              0        0         0         4
  DEL PEAK 17(12Q24.32) WILD-TYPE        2        1         3         8
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 17(12Q24.32) CNV               0        0
  DEL PEAK 17(12Q24.32) WILD-TYPE         1        1
D21V10, multiclass

Clustering(22) Variable = Del Peak 18(15q15.1)
D22V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(15Q15.1) CNV        3  1
  DEL PEAK 18(15Q15.1) WILD-TYPE 16  0
      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                             4                             16 
      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                             1                              0 
$`DEL PEAK 18(15Q15.1) CNV`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 
        7.86         0.92         0.13        66.15 

$`DEL PEAK 18(15Q15.1) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        5.92         0.66        66.12         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.10         0.16        66.15         2.96 

      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                          0.13                           0.10 
      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                         66.15                          66.15 
      DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE 
                         4.390                          0.805 
[1] "0.1 - 66.2 (4.4)" "0.1 - 66.2 (0.8)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 18(15Q15.1) CNV" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 18(15Q15.1) CNV" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 18(15Q15.1) CNV" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 18(15Q15.1) WILD-TYPE"       "DEL PEAK 18(15Q15.1) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 18(15Q15.1) WILD-TYPE" "DEL PEAK 18(15Q15.1) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(15Q15.1) CNV          1    3
  DEL PEAK 18(15Q15.1) WILD-TYPE    9    7
        clus
vv       DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE
  FEMALE                        1                              9
  MALE                          3                              7
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 18(15Q15.1) CNV                                         3
  DEL PEAK 18(15Q15.1) WILD-TYPE                                  14
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 18(15Q15.1) CNV                                           1
  DEL PEAK 18(15Q15.1) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 18(15Q15.1) CNV                                                      0
  DEL PEAK 18(15Q15.1) WILD-TYPE                                                1
D22V4, multiclass
                                                  clus
vv                                                 DEL PEAK 18(15Q15.1) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK 18(15Q15.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 18(15Q15.1) CNV        1  0  3
  DEL PEAK 18(15Q15.1) WILD-TYPE  2  1 13
D22V5, multiclass
    clus
vv   DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE
  M0                        1                              2
  M1                        0                              1
  MX                        3                             13
D22V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(15Q15.1) CNV          0    4
  DEL PEAK 18(15Q15.1) WILD-TYPE    8    8
    clus
vv   DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE
  N0                        0                              8
  N1                        4                              8
                                vv
clus                             R0 R1 RX
  DEL PEAK 18(15Q15.1) CNV        2  1  1
  DEL PEAK 18(15Q15.1) WILD-TYPE 11  4  1
D22V7, multiclass
    clus
vv   DEL PEAK 18(15Q15.1) CNV DEL PEAK 18(15Q15.1) WILD-TYPE
  R0                        2                             11
  R1                        1                              4
  RX                        1                              1
D22V8, continuous
D22V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 18(15Q15.1) CNV              0        0         0         4
  DEL PEAK 18(15Q15.1) WILD-TYPE        2        1         3         8
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 18(15Q15.1) CNV               0        0
  DEL PEAK 18(15Q15.1) WILD-TYPE         1        1
D22V10, multiclass

Clustering(23) Variable = Del Peak 19(17p11.2)
D23V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(17P11.2) CNV        6  1
  DEL PEAK 19(17P11.2) WILD-TYPE 13  0
      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                             7                             13 
      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                             1                              0 
$`DEL PEAK 19(17P11.2) CNV`
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 
        7.86         0.66         0.13         0.62        66.15         0.92 
TCGA-HZ-8636 
        0.16 

$`DEL PEAK 19(17P11.2) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        5.92         0.92        66.12         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 
        0.26         0.99         0.69         0.49         0.10        66.15 
TCGA-HZ-8638 
        2.96 

      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                          0.13                           0.10 
      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                         66.15                          66.15 
      DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE 
                          0.66                           0.99 
[1] "0.1 - 66.2 (0.7)" "0.1 - 66.2 (1.0)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK 19(17P11.2) CNV" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK 19(17P11.2) CNV" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK 19(17P11.2) CNV" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK 19(17P11.2) CNV" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK 19(17P11.2) CNV" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK 19(17P11.2) CNV" "DEL PEAK 19(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(17P11.2) WILD-TYPE"       "DEL PEAK 19(17P11.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 19(17P11.2) WILD-TYPE" "DEL PEAK 19(17P11.2) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(17P11.2) CNV          4    3
  DEL PEAK 19(17P11.2) WILD-TYPE    6    7
        clus
vv       DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE
  FEMALE                        4                              6
  MALE                          3                              7
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 19(17P11.2) CNV                                         6
  DEL PEAK 19(17P11.2) WILD-TYPE                                  11
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 19(17P11.2) CNV                                           1
  DEL PEAK 19(17P11.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 19(17P11.2) CNV                                                      0
  DEL PEAK 19(17P11.2) WILD-TYPE                                                1
D23V4, multiclass
                                                  clus
vv                                                 DEL PEAK 19(17P11.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK 19(17P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 19(17P11.2) CNV        1  1  5
  DEL PEAK 19(17P11.2) WILD-TYPE  2  0 11
D23V5, multiclass
    clus
vv   DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE
  M0                        1                              2
  M1                        1                              0
  MX                        5                             11
D23V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(17P11.2) CNV          3    4
  DEL PEAK 19(17P11.2) WILD-TYPE    5    8
    clus
vv   DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE
  N0                        3                              5
  N1                        4                              8
                                vv
clus                             R0 R1 RX
  DEL PEAK 19(17P11.2) CNV        2  4  1
  DEL PEAK 19(17P11.2) WILD-TYPE 11  1  1
D23V7, multiclass
    clus
vv   DEL PEAK 19(17P11.2) CNV DEL PEAK 19(17P11.2) WILD-TYPE
  R0                        2                             11
  R1                        4                              1
  RX                        1                              1
D23V8, continuous
D23V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 19(17P11.2) CNV              0        0         1         4
  DEL PEAK 19(17P11.2) WILD-TYPE        2        1         2         8
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 19(17P11.2) CNV               1        1
  DEL PEAK 19(17P11.2) WILD-TYPE         0        0
D23V10, multiclass

Clustering(24) Variable = Del Peak 20(17q23.2)
D24V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(17Q23.2) CNV        4  1
  DEL PEAK 20(17Q23.2) WILD-TYPE 15  0
      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                             5                             15 
      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                             1                              0 
$`DEL PEAK 20(17Q23.2) CNV`
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 
        7.86         0.66         0.13        66.15         0.16 

$`DEL PEAK 20(17Q23.2) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        5.92         0.92        66.12         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.10        66.15         2.96 

      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                          0.13                           0.10 
      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                         66.15                          66.15 
      DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE 
                          0.66                           0.92 
[1] "0.1 - 66.2 (0.7)" "0.1 - 66.2 (0.9)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 20(17Q23.2) WILD-TYPE"       "DEL PEAK 20(17Q23.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
"DEL PEAK 20(17Q23.2) WILD-TYPE" "DEL PEAK 20(17Q23.2) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(17Q23.2) CNV          3    2
  DEL PEAK 20(17Q23.2) WILD-TYPE    7    8
        clus
vv       DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE
  FEMALE                        3                              7
  MALE                          2                              8
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 20(17Q23.2) CNV                                         4
  DEL PEAK 20(17Q23.2) WILD-TYPE                                  13
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 20(17Q23.2) CNV                                           1
  DEL PEAK 20(17Q23.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 20(17Q23.2) CNV                                                      0
  DEL PEAK 20(17Q23.2) WILD-TYPE                                                1
D24V4, multiclass
                                                  clus
vv                                                 DEL PEAK 20(17Q23.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK 20(17Q23.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(17Q23.2) CNV        1  1  3
  DEL PEAK 20(17Q23.2) WILD-TYPE  2  0 13
D24V5, multiclass
    clus
vv   DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE
  M0                        1                              2
  M1                        1                              0
  MX                        3                             13
D24V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(17Q23.2) CNV          1    4
  DEL PEAK 20(17Q23.2) WILD-TYPE    7    8
    clus
vv   DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE
  N0                        1                              7
  N1                        4                              8
                                vv
clus                             R0 R1 RX
  DEL PEAK 20(17Q23.2) CNV        1  3  1
  DEL PEAK 20(17Q23.2) WILD-TYPE 12  2  1
D24V7, multiclass
    clus
vv   DEL PEAK 20(17Q23.2) CNV DEL PEAK 20(17Q23.2) WILD-TYPE
  R0                        1                             12
  R1                        3                              2
  RX                        1                              1
D24V8, continuous
D24V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 20(17Q23.2) CNV              0        0         0         4
  DEL PEAK 20(17Q23.2) WILD-TYPE        2        1         3         8
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 20(17Q23.2) CNV               0        1
  DEL PEAK 20(17Q23.2) WILD-TYPE         1        0
D24V10, multiclass

Clustering(25) Variable = Del Peak 21(18q21.2)
D25V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(18Q21.2) CNV       10  1
  DEL PEAK 21(18Q21.2) WILD-TYPE  9  0
      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                            11                              9 
      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                             1                              0 
$`DEL PEAK 21(18Q21.2) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 
        5.92         7.86         0.92         0.66        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-8637 
        0.62        66.15         0.92         0.16        66.15 

$`DEL PEAK 21(18Q21.2) WILD-TYPE`
TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 
       66.12         0.13         0.26        12.13         0.99         0.69 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.49         0.10         2.96 

      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                          0.16                           0.10 
      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                         66.15                          66.12 
      DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE 
                          0.92                           0.69 
[1] "0.2 - 66.2 (0.9)" "0.1 - 66.1 (0.7)"
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 21(18Q21.2) WILD-TYPE" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 21(18Q21.2) WILD-TYPE" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 21(18Q21.2) WILD-TYPE"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 21(18Q21.2) WILD-TYPE"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 21(18Q21.2) WILD-TYPE" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 21(18Q21.2) WILD-TYPE" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 21(18Q21.2) WILD-TYPE"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 21(18Q21.2) WILD-TYPE"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-HZ-7289 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-7920                     TCGA-HZ-7922 
"DEL PEAK 21(18Q21.2) WILD-TYPE" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 21(18Q21.2) WILD-TYPE" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
      "DEL PEAK 21(18Q21.2) CNV"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 21(18Q21.2) WILD-TYPE"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 21(18Q21.2) WILD-TYPE"       "DEL PEAK 21(18Q21.2) CNV" 
                    TCGA-HZ-8637                     TCGA-HZ-8638 
      "DEL PEAK 21(18Q21.2) CNV" "DEL PEAK 21(18Q21.2) WILD-TYPE" 
[1] "hr=" "1"  
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(18Q21.2) CNV          5    6
  DEL PEAK 21(18Q21.2) WILD-TYPE    5    4
        clus
vv       DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE
  FEMALE                        5                              5
  MALE                          6                              4
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 21(18Q21.2) CNV                                        10
  DEL PEAK 21(18Q21.2) WILD-TYPE                                   7
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 21(18Q21.2) CNV                                           1
  DEL PEAK 21(18Q21.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 21(18Q21.2) CNV                                                      0
  DEL PEAK 21(18Q21.2) WILD-TYPE                                                1
D25V4, multiclass
                                                  clus
vv                                                 DEL PEAK 21(18Q21.2) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                   1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                        0
                                                  clus
vv                                                 DEL PEAK 21(18Q21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(18Q21.2) CNV        3  1  7
  DEL PEAK 21(18Q21.2) WILD-TYPE  0  0  9
D25V5, multiclass
    clus
vv   DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE
  M0                        3                              0
  M1                        1                              0
  MX                        7                              9
D25V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(18Q21.2) CNV          3    8
  DEL PEAK 21(18Q21.2) WILD-TYPE    5    4
    clus
vv   DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE
  N0                        3                              5
  N1                        8                              4
                                vv
clus                             R0 R1 RX
  DEL PEAK 21(18Q21.2) CNV        5  4  2
  DEL PEAK 21(18Q21.2) WILD-TYPE  8  1  0
D25V7, multiclass
    clus
vv   DEL PEAK 21(18Q21.2) CNV DEL PEAK 21(18Q21.2) WILD-TYPE
  R0                        5                              8
  R1                        4                              1
  RX                        2                              0
D25V8, continuous
D25V9, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 21(18Q21.2) CNV              0        0         1         8
  DEL PEAK 21(18Q21.2) WILD-TYPE        2        1         2         4
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 21(18Q21.2) CNV               1        1
  DEL PEAK 21(18Q21.2) WILD-TYPE         0        0
D25V10, multiclass

Clustering(26) Variable = Del Peak 22(21q22.11)
D26V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 22(21Q22.11) CNV        6  1
  DEL PEAK 22(21Q22.11) WILD-TYPE 13  0
      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                              7                              13 
      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                              1                               0 
$`DEL PEAK 22(21Q22.11) CNV`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 
        5.92         0.92         0.66         0.13        66.15         0.16 
TCGA-HZ-8637 
       66.15 

$`DEL PEAK 22(21Q22.11) WILD-TYPE`
TCGA-HZ-7289 TCGA-HZ-7920 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.86        66.12         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.62         0.99         0.69         0.92         0.49         0.10 
TCGA-HZ-8638 
        2.96 

      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                           0.13                            0.10 
      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                          66.15                           66.12 
      DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE 
                           0.92                            0.92 
[1] "0.1 - 66.2 (0.9)" "0.1 - 66.1 (0.9)"
                     TCGA-H6-8124                      TCGA-HZ-7289 
      "DEL PEAK 22(21Q22.11) CNV" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
      "DEL PEAK 22(21Q22.11) CNV"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
      "DEL PEAK 22(21Q22.11) CNV" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
      "DEL PEAK 22(21Q22.11) CNV" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
      "DEL PEAK 22(21Q22.11) CNV"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
      "DEL PEAK 22(21Q22.11) CNV" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
      "DEL PEAK 22(21Q22.11) CNV" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
      "DEL PEAK 22(21Q22.11) CNV"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 22(21Q22.11) WILD-TYPE" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 22(21Q22.11) WILD-TYPE"       "DEL PEAK 22(21Q22.11) CNV" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
      "DEL PEAK 22(21Q22.11) CNV" "DEL PEAK 22(21Q22.11) WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(21Q22.11) CNV          5    2
  DEL PEAK 22(21Q22.11) WILD-TYPE    5    8
        clus
vv       DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE
  FEMALE                         5                               5
  MALE                           2                               8
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 22(21Q22.11) CNV                                         7
  DEL PEAK 22(21Q22.11) WILD-TYPE                                  10
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 22(21Q22.11) CNV                                           0
  DEL PEAK 22(21Q22.11) WILD-TYPE                                     2
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 22(21Q22.11) CNV                                                      0
  DEL PEAK 22(21Q22.11) WILD-TYPE                                                1
D26V4, multiclass
                                                  clus
vv                                                 DEL PEAK 22(21Q22.11) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 DEL PEAK 22(21Q22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
                                 vv
clus                              M0 M1 MX
  DEL PEAK 22(21Q22.11) CNV        3  1  3
  DEL PEAK 22(21Q22.11) WILD-TYPE  0  0 13
D26V5, multiclass
    clus
vv   DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE
  M0                         3                               0
  M1                         1                               0
  MX                         3                              13
D26V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(21Q22.11) CNV          1    6
  DEL PEAK 22(21Q22.11) WILD-TYPE    7    6
    clus
vv   DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE
  N0                         1                               7
  N1                         6                               6
                                 vv
clus                              R0 R1 RX
  DEL PEAK 22(21Q22.11) CNV        4  3  0
  DEL PEAK 22(21Q22.11) WILD-TYPE  9  2  2
D26V7, multiclass
    clus
vv   DEL PEAK 22(21Q22.11) CNV DEL PEAK 22(21Q22.11) WILD-TYPE
  R0                         4                               9
  R1                         3                               2
  RX                         0                               2
D26V8, continuous
D26V9, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 22(21Q22.11) CNV              0        0         0         6
  DEL PEAK 22(21Q22.11) WILD-TYPE        2        1         3         6
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 22(21Q22.11) CNV               0        1
  DEL PEAK 22(21Q22.11) WILD-TYPE         1        0
D26V10, multiclass

Clustering(27) Variable = Del Peak 23(22q13.31)
D27V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 23(22Q13.31) CNV        2  1
  DEL PEAK 23(22Q13.31) WILD-TYPE 17  0
      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                              3                              17 
      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                              1                               0 
$`DEL PEAK 23(22Q13.31) CNV`
TCGA-HZ-7919 TCGA-HZ-8005 TCGA-HZ-8636 
        0.66        66.15         0.16 

$`DEL PEAK 23(22Q13.31) WILD-TYPE`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 
        5.92         7.86         0.92        66.12         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8637 TCGA-HZ-8638 
        0.92         0.49         0.10        66.15         2.96 

      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                           0.16                            0.10 
      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                          66.15                           66.15 
      DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE 
                           0.66                            0.92 
[1] "0.2 - 66.2 (0.7)" "0.1 - 66.2 (0.9)"
                     TCGA-H6-8124                      TCGA-HZ-7289 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-HZ-7289 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-7920                      TCGA-HZ-7922 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 23(22Q13.31) WILD-TYPE"       "DEL PEAK 23(22Q13.31) CNV" 
                     TCGA-HZ-8637                      TCGA-HZ-8638 
"DEL PEAK 23(22Q13.31) WILD-TYPE" "DEL PEAK 23(22Q13.31) WILD-TYPE" 
[1] "hr="     "1.6e+09"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(22Q13.31) CNV          2    1
  DEL PEAK 23(22Q13.31) WILD-TYPE    8    9
        clus
vv       DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE
  FEMALE                         2                               8
  MALE                           1                               9
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 23(22Q13.31) CNV                                         3
  DEL PEAK 23(22Q13.31) WILD-TYPE                                  14
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 23(22Q13.31) CNV                                           0
  DEL PEAK 23(22Q13.31) WILD-TYPE                                     2
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 23(22Q13.31) CNV                                                      0
  DEL PEAK 23(22Q13.31) WILD-TYPE                                                1
D27V4, multiclass
                                                  clus
vv                                                 DEL PEAK 23(22Q13.31) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 DEL PEAK 23(22Q13.31) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
                                 vv
clus                              M0 M1 MX
  DEL PEAK 23(22Q13.31) CNV        1  1  1
  DEL PEAK 23(22Q13.31) WILD-TYPE  2  0 15
D27V5, multiclass
    clus
vv   DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE
  M0                         1                               2
  M1                         1                               0
  MX                         1                              15
D27V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(22Q13.31) CNV          1    2
  DEL PEAK 23(22Q13.31) WILD-TYPE    7   10
    clus
vv   DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE
  N0                         1                               7
  N1                         2                              10
                                 vv
clus                              R0 R1 RX
  DEL PEAK 23(22Q13.31) CNV        0  3  0
  DEL PEAK 23(22Q13.31) WILD-TYPE 13  2  2
D27V7, multiclass
    clus
vv   DEL PEAK 23(22Q13.31) CNV DEL PEAK 23(22Q13.31) WILD-TYPE
  R0                         0                              13
  R1                         3                               2
  RX                         0                               2
D27V8, continuous
D27V9, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 23(22Q13.31) CNV              0        0         0         2
  DEL PEAK 23(22Q13.31) WILD-TYPE        2        1         3        10
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 23(22Q13.31) CNV               0        1
  DEL PEAK 23(22Q13.31) WILD-TYPE         1        0
D27V10, multiclass

Clustering(28) Variable = Del Peak 24(Xq21.1)
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 24(XQ21.1) CNV        3  0
  DEL PEAK 24(XQ21.1) WILD-TYPE 16  1
      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                            3                            17 
      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                            0                             1 
$`DEL PEAK 24(XQ21.1) CNV`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 
        5.92         7.86         0.92 

$`DEL PEAK 24(XQ21.1) WILD-TYPE`
TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.66        66.12         0.13         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.99         0.69        66.15         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
        0.49         0.10         0.16        66.15         2.96 

      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                         0.92                          0.10 
      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                         7.86                         66.15 
      DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE 
                         5.92                          0.69 
[1] "0.9 - 7.9 (5.9)"  "0.1 - 66.2 (0.7)"
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 24(XQ21.1) CNV"       "DEL PEAK 24(XQ21.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 24(XQ21.1) CNV" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 24(XQ21.1) CNV"       "DEL PEAK 24(XQ21.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 24(XQ21.1) CNV" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-HZ-7289 
      "DEL PEAK 24(XQ21.1) CNV"       "DEL PEAK 24(XQ21.1) CNV" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
      "DEL PEAK 24(XQ21.1) CNV" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7920                    TCGA-HZ-7922 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
                   TCGA-HZ-8637                    TCGA-HZ-8638 
"DEL PEAK 24(XQ21.1) WILD-TYPE" "DEL PEAK 24(XQ21.1) WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 24(XQ21.1) CNV          1    2
  DEL PEAK 24(XQ21.1) WILD-TYPE    9    8
        clus
vv       DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE
  FEMALE                       1                             9
  MALE                         2                             8
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 24(XQ21.1) CNV                                         2
  DEL PEAK 24(XQ21.1) WILD-TYPE                                  15
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 24(XQ21.1) CNV                                           1
  DEL PEAK 24(XQ21.1) WILD-TYPE                                     1
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 24(XQ21.1) CNV                                                      0
  DEL PEAK 24(XQ21.1) WILD-TYPE                                                1
D28V4, multiclass
                                                  clus
vv                                                 DEL PEAK 24(XQ21.1) CNV
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                    2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                  1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                       0
                                                  clus
vv                                                 DEL PEAK 24(XQ21.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                               vv
clus                            M0 M1 MX
  DEL PEAK 24(XQ21.1) CNV        2  0  1
  DEL PEAK 24(XQ21.1) WILD-TYPE  1  1 15
D28V5, multiclass
    clus
vv   DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE
  M0                       2                             1
  M1                       0                             1
  MX                       1                            15
D28V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 24(XQ21.1) CNV          0    3
  DEL PEAK 24(XQ21.1) WILD-TYPE    8    9
    clus
vv   DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE
  N0                       0                             8
  N1                       3                             9
                               vv
clus                            R0 R1 RX
  DEL PEAK 24(XQ21.1) CNV        2  0  1
  DEL PEAK 24(XQ21.1) WILD-TYPE 11  5  1
D28V7, multiclass
    clus
vv   DEL PEAK 24(XQ21.1) CNV DEL PEAK 24(XQ21.1) WILD-TYPE
  R0                       2                            11
  R1                       0                             5
  RX                       1                             1
D28V8, continuous
D28V9, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 24(XQ21.1) CNV              0        0         0         3         0
  DEL PEAK 24(XQ21.1) WILD-TYPE        2        1         3         9         1
                               vv
clus                            STAGE IV
  DEL PEAK 24(XQ21.1) CNV              0
  DEL PEAK 24(XQ21.1) WILD-TYPE        1
D28V10, multiclass
                       V1.D                          V2 
            "Time to Death"                       "AGE" 
                         V3                          V4 
                   "GENDER"         "HISTOLOGICAL.TYPE" 
                         V5                          V6 
       "DISTANT.METASTASIS"     "LYMPH.NODE.METASTASIS" 
                         V7                          V8 
"COMPLETENESS.OF.RESECTION"     "NUMBER.OF.LYMPH.NODES" 
                         V9                         V10 
          "TUMOR.STAGECODE"     "NEOPLASM.DISEASESTAGE" 
> q(save="no")
