
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/PRAD-TP/3536845/PRAD-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/PRAD-TP/3352982/PRAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=157, in cluster file=198, common to both=156
[1]   8 156
[1] "CN_CNMF"
[1] 3
 1  2  3  4 
28 72 53  2 
 1  2  3 
28 72 53 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
48 52 43 13 
 1  2  3  4 
48 52 43 13 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
51 49 54 
 1  2  3 
51 49 54 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
43 65 46 
 1  2  3 
43 65 46 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4 
44 40 26 45 
 1  2  3  4 
44 40 26 45 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
31 59 65 
 1  2  3 
31 59 65 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3  4  5 
44 22 22 21 46 
 1  2  3  4  5 
44 22 22 21 46 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
 2 81 72 
 2  3 
81 72 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "HISTOLOGICALTYPE"                 "DISTANT.METASTASIS"              
[11] "LYMPH.NODE.METASTASIS"            "COMPLETENESS.OF.RESECTION"       
[13] "NUMBER.OF.LYMPH.NODES"            "TUMOR.STAGECODE"                 
[15] "NEOPLASM.DISEASESTAGE"            "BATCHNUMBER"                     

Input Data has 16 rows and 156 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
          91          212          671           31          395          424 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
          60           91          731           31          395         1065 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 
         942           31           62           28         1339          365 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
          31          700           31          458          731           62 
TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 
         395          485          820          303          974         1004 
TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 
          91          881          378          605          594          396 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 
         536          532          729          244          530          229 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
         447          356          182          907         1096          737 
TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 
         788          782          724         1061          783          849 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 
        1195         1153          842         1403          834          790 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 
         567          397         1272          724          910          519 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
         821         1490         1860          295          289          285 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
         233          175          170          191            9          169 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
          64          131          167          258           79           52 
TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
          70          217          526           43          284          187 
TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 
          32          923         2328         1925         1669         1649 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 
        1338          554         1144         1215          847         1000 
TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 
        1008          822          993          841          804          101 
TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6377 
         875          851          806          846          505          518 
TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6499 
         664          390          356         1442         1014         1109 
TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 
         674          457          486          451          324          512 
TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
          31           61           NA          162           89           61 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
          31           30           31           60           51           72 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 
          30           63           53           45           51           57 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 
          62           61           34           98           45           56 
TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 
          62         2315         1949         1899           NA           98 
Variable 1:'AGE':	nDistinctValues=28,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=131,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DISTANT.METASTASIS':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'LYMPH.NODE.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGECODE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "LYMPH.NODE.METASTASIS"    
[3] "COMPLETENESS.OF.RESECTION" "NUMBER.OF.LYMPH.NODES"    
[5] "TUMOR.STAGECODE"          
[1] "TUMOR.?STAGE" "5"           
[1] "stage2"
vv
T2A T2B T2C T3A T3B  T4 
  5   2  61  57  25   5 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 156 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=28, binary=FALSE, numeric=TRUE
LYMPH.NODE.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=9, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 28  0
  subtype2 72  0
  subtype3 52  1
subtype1 subtype2 subtype3 
      28       72       53 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5771 TCGA-CH-5772 
        2.99         1.02         1.02        15.06        12.99        15.95 
TCGA-CH-5792 TCGA-EJ-5505 TCGA-EJ-5531 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7317 
        2.99        14.70        23.80        26.99        48.99         9.37 
TCGA-EJ-7327 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 TCGA-EJ-7792 TCGA-EJ-7794 
        5.75         0.30         2.10         2.60        17.29         9.34 
TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6351 TCGA-G9-6369 TCGA-G9-6496 TCGA-G9-7510 
       63.29        54.21        39.95        27.98        33.34        22.16 
TCGA-H9-7775 TCGA-HC-7080 TCGA-HC-7736 TCGA-HC-7747 
        1.02         2.01         0.99         1.87 

$subtype2
TCGA-CH-5738 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5750 TCGA-CH-5752 
        6.97        12.99        13.94        24.03        12.99        30.97 
TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5769 TCGA-CH-5789 TCGA-CH-5790 
       12.00         1.02        23.01         2.04         9.96        32.02 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
       28.96        12.43        19.53        13.02        17.62        17.49 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5512 TCGA-EJ-5515 
        8.02        17.42        11.70        29.82        25.71        34.88 
TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5522 TCGA-EJ-5526 TCGA-EJ-5530 TCGA-EJ-5532 
       25.74        27.91        46.13        18.64        41.82        29.92 
TCGA-EJ-5542 TCGA-EJ-7321 TCGA-EJ-7328 TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7791 
       17.06         7.66         5.59         4.31         8.48         7.13 
TCGA-EJ-7793 TCGA-EJ-7797 TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6336 
        1.41         6.15         1.05        30.35        65.92        54.87 
TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6363 
       18.21        37.61        27.85        32.88        27.02        32.65 
TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6378 
       27.65        26.43        28.77        26.50        27.81        21.83 
TCGA-G9-6385 TCGA-G9-7519 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-HC-7075 
       11.70        15.02        14.83        10.65        16.83         2.01 
TCGA-HC-7079 TCGA-HC-7209 TCGA-HC-7231 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7748 
        2.93         1.02         2.37         2.07         1.74         2.04 
TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7818 TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8198 
        1.12         3.22         1.48        64.08        62.43         3.22 

$subtype3
TCGA-CH-5739 TCGA-CH-5744 TCGA-CH-5751 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 
       22.06         1.97        35.01         1.02         2.04         0.92 
TCGA-CH-5762 TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5788 TCGA-CH-5791 TCGA-EJ-5495 
       44.02         1.02        24.03        26.96        33.01        19.89 
TCGA-EJ-5501 TCGA-EJ-5504 TCGA-EJ-5507 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
       23.97         7.53         5.98        36.03        24.23        25.91 
TCGA-EJ-5514 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5524 TCGA-EJ-5525 
       23.80        39.29        37.91        27.68        27.42        25.97 
TCGA-EJ-5527 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7330 TCGA-EJ-7781 TCGA-EJ-7784 
       13.05         9.70         9.50         6.28         5.56         5.49 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-G9-6342 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6373 
        1.71         2.30        43.99        33.14         3.32        16.60 
TCGA-G9-6377 TCGA-G9-6384 TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7521 TCGA-HC-7077 
       17.03        12.82        47.41        36.46        15.98        65.98 
TCGA-HC-7078 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7742 
        5.33         0.99         1.02         1.97         1.68         1.48 
TCGA-HC-7749 TCGA-HC-7821 TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7171 
        2.01         1.84         2.04        65.92        66.02 

subtype1 subtype2 subtype3 
    0.30     1.02     0.92 
subtype1 subtype2 subtype3 
   63.29    65.92    66.02 
subtype1 subtype2 subtype3 
  11.180   16.945   15.980 
[1] "0.3 - 63.3 (11.2)" "1.0 - 65.9 (16.9)" "0.9 - 66.0 (16.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 26  0
  subtype2 55  4
  subtype3 38 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26    0
  subtype2   55    4
  subtype3   38   11
    clus
vv   subtype1 subtype2 subtype3
  N0       26       55       38
  N1        0        4       11
          vv
clus       R0 R1 RX
  subtype1 19  6  0
  subtype2 56 13  2
  subtype3 41 10  0
D1V4, multiclass
D1V5, continuous
D1V6, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 48  0
  subtype2 51  1
  subtype3 43  0
  subtype4 13  0
subtype1 subtype2 subtype3 subtype4 
      48       52       43       13 
subtype1 subtype2 subtype3 subtype4 
       0        1        0        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5751 TCGA-CH-5761 TCGA-CH-5767 TCGA-CH-5772 
        2.99         1.02        35.01         0.92        15.06        15.95 
TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5514 
        2.99        12.43         7.53        14.70        36.03        23.80 
TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 
       27.91        39.29        37.91        29.92        26.99        48.99 
TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 TCGA-EJ-7789 
       61.15         9.37         0.30         2.10         2.60         2.30 
TCGA-EJ-7794 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6366 TCGA-G9-6369 
        9.34        63.29        54.21        18.21         3.32        27.98 
TCGA-G9-6371 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
       27.81        47.41        33.34        36.46        22.16        15.02 
TCGA-G9-7521 TCGA-G9-7523 TCGA-HC-7075 TCGA-HC-7078 TCGA-HC-7080 TCGA-HC-7211 
       15.98        10.65         2.01         5.33         2.01         0.99 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7170 
        0.99         2.07         1.48         2.04        65.92        62.43 

$subtype2
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5750 
        6.97        22.06         1.02        12.99         1.97        12.99 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5764 TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5769 
        1.02         2.04         1.02         1.02        24.03         2.04 
TCGA-CH-5788 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5496 TCGA-EJ-5507 
       26.96        32.02        33.01        28.96        19.53         5.98 
TCGA-EJ-5511 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5530 
       25.91        27.68        46.13        27.42        25.97        41.82 
TCGA-EJ-5542 TCGA-EJ-7327 TCGA-EJ-7784 TCGA-EJ-7788 TCGA-G9-6332 TCGA-G9-6342 
       17.06         5.75         5.49         1.71        65.92        43.99 
TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6373 TCGA-G9-6377 
       27.02        32.65        27.65        26.43        16.60        17.03 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7209 TCGA-HC-7212 TCGA-HC-7213 
       16.83         1.02        65.98         1.02         1.02         1.97 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7744 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7752 
        1.68         2.37         1.68         2.04         2.01         3.22 
TCGA-HC-7818 TCGA-HI-7169 TCGA-HI-7171 TCGA-J4-8198 
        1.48        64.08        66.02         3.22 

$subtype3
TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5771 TCGA-CH-5789 
       13.94        24.03        44.02        12.00        12.99         9.96 
TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 
       13.02        17.62        23.97         8.02        17.42        11.70 
TCGA-EJ-5508 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5531 
       29.82        24.23        25.71        34.88        25.74        23.80 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7781 TCGA-EJ-7785 TCGA-EJ-7791 TCGA-EJ-7792 
        5.59         6.28         5.56         8.48         7.13        17.29 
TCGA-EJ-7793 TCGA-EJ-7797 TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6336 TCGA-G9-6348 
        1.41         6.15         1.05        30.35        54.87        37.61 
TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6378 
       39.95        27.85        32.88        28.77        26.50        21.83 
TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-7522 TCGA-HC-7079 TCGA-HC-7740 TCGA-HC-7747 
       12.82        11.70        14.83         2.93         1.74         1.87 
TCGA-HC-7750 
        1.12 

$subtype4
TCGA-CH-5745 TCGA-CH-5752 TCGA-CH-5765 TCGA-EJ-5495 TCGA-EJ-5499 TCGA-EJ-5526 
        2.99        30.97        23.01        19.89        17.49        18.64 
TCGA-EJ-5527 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7321 TCGA-EJ-7783 TCGA-G9-6361 
       13.05         9.70         9.50         7.66         4.31        33.14 
TCGA-HC-7821 
        1.84 

subtype1 subtype2 subtype3 subtype4 
    0.30     1.02     1.05     1.84 
subtype1 subtype2 subtype3 subtype4 
   65.92    66.02    54.87    33.14 
subtype1 subtype2 subtype3 subtype4 
  15.040   14.795   14.830   13.050 
[1] "0.3 - 65.9 (15.0)" "1.0 - 66.0 (14.8)" "1.1 - 54.9 (14.8)"
[4] "1.8 - 33.1 (13.1)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype4" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype4" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype4" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
 [73] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype4" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype4" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype4" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
 [73] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype4" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype4" "subtype2" "subtype3"
 [37] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype4" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
 [73] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype4"
[151] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 38  5
  subtype2 39  6
  subtype3 35  1
  subtype4 10  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38    5
  subtype2   39    6
  subtype3   35    1
  subtype4   10    3
    clus
vv   subtype1 subtype2 subtype3 subtype4
  N0       38       39       35       10
  N1        5        6        1        3
          vv
clus       R0 R1 RX
  subtype1 36 11  0
  subtype2 40  9  0
  subtype3 32  8  2
  subtype4 10  2  0
D2V4, multiclass
D2V5, continuous
D2V6, continuous

Clustering(3) Variable = MRNASEQ_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 51  0
  subtype2 49  0
  subtype3 53  1
subtype1 subtype2 subtype3 
      51       49       54 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5751 TCGA-CH-5761 TCGA-CH-5767 TCGA-CH-5772 
        2.99         1.02        35.01         0.92        15.06        15.95 
TCGA-CH-5788 TCGA-EJ-5494 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5511 
       26.96        12.43         7.53        14.70        36.03        25.91 
TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5532 TCGA-EJ-7115 
       23.80        34.88        27.91        39.29        29.92        26.99 
TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 
       48.99        61.15         9.37         0.30         2.10         2.60 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7792 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6343 
        1.71         2.30        17.29        63.29        54.21        18.21 
TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6371 TCGA-G9-6378 TCGA-G9-6494 TCGA-G9-6496 
        3.32        27.98        27.81        21.83        47.41        33.34 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-HC-7075 
       36.46        22.16        15.02        15.98        10.65         2.01 
TCGA-HC-7078 TCGA-HC-7080 TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-7750 TCGA-HC-7752 
        5.33         2.01         2.07         1.48         1.12         3.22 
TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7169 
        2.04        65.92        64.08 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 
        6.97        13.94         2.99        24.03        44.02        12.00 
TCGA-CH-5771 TCGA-CH-5789 TCGA-CH-5792 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
       12.99         9.96         2.99        13.02        17.62        17.49 
TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5510 
       23.97         8.02        17.42        11.70        29.82        24.23 
TCGA-EJ-5512 TCGA-EJ-5522 TCGA-EJ-5526 TCGA-EJ-5531 TCGA-EJ-7328 TCGA-EJ-7330 
       25.71        46.13        18.64        23.80         5.59         6.28 
TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7791 TCGA-EJ-7793 TCGA-EJ-7794 
        5.56         4.31         8.48         7.13         1.41         9.34 
TCGA-EJ-7797 TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6353 
        6.15         1.05        30.35        54.87        37.61        27.85 
TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-7522 
       32.88        28.77        26.50        12.82        11.70        14.83 
TCGA-HC-7079 TCGA-HC-7211 TCGA-HC-7736 TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7818 
        2.93         0.99         0.99         1.74         1.87         1.48 
TCGA-HI-7170 
       62.43 

$subtype3
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5750 TCGA-CH-5752 
       22.06         1.02        12.99         1.97        12.99        30.97 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5768 
        1.02         2.04         1.02        23.01         1.02        24.03 
TCGA-CH-5769 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 
        2.04        32.02        33.01        28.96        19.89        19.53 
TCGA-EJ-5507 TCGA-EJ-5516 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5524 TCGA-EJ-5525 
        5.98        25.74        37.91        27.68        27.42        25.97 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5542 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7321 
       13.05        41.82        17.06         9.70         9.50         7.66 
TCGA-EJ-7327 TCGA-EJ-7784 TCGA-G9-6332 TCGA-G9-6342 TCGA-G9-6361 TCGA-G9-6362 
        5.75         5.49        65.92        43.99        33.14        27.02 
TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-7525 TCGA-H9-7775 
       27.65        26.43        16.60        17.03        16.83         1.02 
TCGA-HC-7077 TCGA-HC-7209 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
       65.98         1.02         1.02         1.97         1.68         2.37 
TCGA-HC-7744 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7821 TCGA-HI-7171 TCGA-J4-8198 
        1.68         2.04         2.01         1.84        66.02         3.22 

subtype1 subtype2 subtype3 
    0.30     0.99     1.02 
subtype1 subtype2 subtype3 
   65.92    62.43    66.02 
subtype1 subtype2 subtype3 
  15.980   12.820   14.825 
[1] "0.3 - 65.9 (16.0)" "1.0 - 62.4 (12.8)" "1.0 - 66.0 (14.8)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 39  5
  subtype2 42  2
  subtype3 40  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39    5
  subtype2   42    2
  subtype3   40    8
    clus
vv   subtype1 subtype2 subtype3
  N0       39       42       40
  N1        5        2        8
          vv
clus       R0 R1 RX
  subtype1 39 12  0
  subtype2 38  7  2
  subtype3 40 10  0
D3V4, multiclass
D3V5, continuous
D3V6, continuous

Clustering(4) Variable = MRNASEQ_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 43  0
  subtype2 64  1
  subtype3 46  0
subtype1 subtype2 subtype3 
      43       65       46 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5788 TCGA-EJ-5494 
        2.99         1.02        15.06        15.95        26.96        12.43 
TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5532 
        7.53        14.70        36.03        27.91        39.29        29.92 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7782 TCGA-EJ-7786 
       26.99        48.99        61.15         9.37         2.10         2.60 
TCGA-EJ-7789 TCGA-EJ-7792 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6369 
        2.30        17.29        63.29        54.21        18.21        27.98 
TCGA-G9-6371 TCGA-G9-6378 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7510 
       27.81        21.83        47.41        33.34        36.46        22.16 
TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-HC-7075 TCGA-HC-7078 TCGA-HC-7080 
       15.02        15.98        10.65         2.01         5.33         2.01 
TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-8265 TCGA-HI-7168 
        2.07         1.48         1.12         3.22         2.04        65.92 
TCGA-HI-7169 
       64.08 

$subtype2
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5746 TCGA-CH-5750 
       22.06         1.02        12.99         1.97        24.03        12.99 
TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5764 
       35.01        30.97         1.02         2.04         0.92         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5790 TCGA-CH-5791 
       23.01         1.02        24.03         2.04        32.02        33.01 
TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5507 TCGA-EJ-5511 
       28.96        19.89        19.53        13.02         5.98        25.91 
TCGA-EJ-5514 TCGA-EJ-5516 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 
       23.80        25.74        37.91        27.68        46.13        27.42 
TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5542 TCGA-EJ-7314 
       25.97        18.64        13.05        41.82        17.06         9.70 
TCGA-EJ-7315 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7788 
        9.50         7.66         5.75         5.49         8.48         1.71 
TCGA-EJ-7797 TCGA-G9-6332 TCGA-G9-6342 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6364 
        6.15        65.92        43.99        33.14        27.02        27.65 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6373 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 
       26.43         3.32        16.60        16.83         1.02        65.98 
TCGA-HC-7209 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7744 
        1.02         1.02         1.97         1.68         2.37         1.68 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7821 TCGA-HI-7171 TCGA-J4-8198 
        2.04         2.01         1.84        66.02         3.22 

$subtype3
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5745 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5771 
        6.97        13.94         2.99        44.02        12.00        12.99 
TCGA-CH-5789 TCGA-CH-5792 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 
        9.96         2.99        17.62        17.49        23.97         8.02 
TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 
       17.42        11.70        29.82        24.23        25.71        34.88 
TCGA-EJ-5531 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 
       23.80         5.59         6.28         0.30         5.56         4.31 
TCGA-EJ-7791 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6336 
        7.13         1.41         9.34         1.05        30.35        54.87 
TCGA-G9-6348 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6377 
       37.61        27.85        32.88        28.77        26.50        17.03 
TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-7522 TCGA-HC-7079 TCGA-HC-7211 TCGA-HC-7736 
       12.82        11.70        14.83         2.93         0.99         0.99 
TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7818 TCGA-HI-7170 
        1.74         1.87         1.48        62.43 

subtype1 subtype2 subtype3 
    1.02     0.92     0.30 
subtype1 subtype2 subtype3 
   65.92    66.02    62.43 
subtype1 subtype2 subtype3 
   15.98    13.05    12.41 
[1] "1.0 - 65.9 (16.0)" "0.9 - 66.0 (13.1)" "0.3 - 62.4 (12.4)"
  [1] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 33  4
  subtype2 48 10
  subtype3 40  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33    4
  subtype2   48   10
  subtype3   40    1
    clus
vv   subtype1 subtype2 subtype3
  N0       33       48       40
  N1        4       10        1
          vv
clus       R0 R1 RX
  subtype1 32 11  0
  subtype2 49 12  0
  subtype3 36  6  2
D4V4, multiclass
D4V5, continuous
D4V6, continuous

Clustering(5) Variable = MIRSEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 44  0
  subtype2 40  0
  subtype3 26  0
  subtype4 44  1
subtype1 subtype2 subtype3 subtype4 
      44       40       26       45 
subtype1 subtype2 subtype3 subtype4 
       0        0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 
        2.99        22.06         1.02        12.99         1.97         2.99 
TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 
        1.02        12.99        30.97         1.02         2.04         0.92 
TCGA-CH-5765 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5788 TCGA-CH-5790 
       23.01        15.06        24.03         2.04        26.96        32.02 
TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5501 TCGA-EJ-5504 
       33.01         2.99        28.96        12.43        23.97         7.53 
TCGA-EJ-5505 TCGA-EJ-5507 TCGA-EJ-5509 TCGA-EJ-5511 TCGA-EJ-5518 TCGA-EJ-5519 
       14.70         5.98        36.03        25.91        39.29        37.91 
TCGA-EJ-5525 TCGA-EJ-7789 TCGA-G9-6332 TCGA-G9-6348 TCGA-G9-6362 TCGA-G9-6364 
       25.97         2.30        65.92        37.61        27.02        27.65 
TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6496 TCGA-HC-7077 TCGA-HC-7080 TCGA-HC-7212 
       27.81        16.60        33.34        65.98         2.01         1.02 
TCGA-HC-7752 TCGA-HC-8265 
        3.22         2.04 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        6.97        13.94        24.03        44.02        12.00         1.02 
TCGA-CH-5766 TCGA-CH-5771 TCGA-CH-5789 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 
        1.02        12.99         9.96        19.89        19.53        13.02 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 TCGA-EJ-5510 
       17.62        17.49        17.42        11.70        29.82        24.23 
TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 
       25.71        34.88        25.74        27.68        46.13        27.42 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 TCGA-EJ-7797 TCGA-G9-6329 
       18.64        13.05        23.80        17.06         6.15        30.35 
TCGA-G9-6336 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6384 
       54.87        27.85        32.88        28.77        26.50        12.82 
TCGA-G9-7510 TCGA-G9-7522 TCGA-HC-7747 TCGA-HC-7748 
       22.16        14.83         1.87         2.04 

$subtype3
TCGA-CH-5772 TCGA-EJ-5502 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-5530 TCGA-EJ-5532 
       15.95         8.02        23.80        27.91        41.82        29.92 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7792 
        6.28         0.30         2.60         1.71         7.13        17.29 
TCGA-G9-6338 TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6378 TCGA-G9-6385 TCGA-G9-6494 
       54.21        32.65        26.43        21.83        11.70        47.41 
TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-H9-7775 TCGA-HC-7740 TCGA-HC-7750 
       15.02        15.98        10.65         1.02         1.74         1.12 
TCGA-HI-7169 TCGA-HI-7170 
       64.08        62.43 

$subtype4
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       26.99        48.99        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 
        7.66         5.75         5.59         5.56         2.10         4.31 
TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-FC-7708 TCGA-G9-6333 
        5.49         8.48         1.41         9.34         1.05        63.29 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 
       43.99        18.21        39.95        33.14         3.32        27.98 
TCGA-G9-6377 TCGA-G9-6499 TCGA-G9-7525 TCGA-HC-7075 TCGA-HC-7078 TCGA-HC-7079 
       17.03        36.46        16.83         2.01         5.33         2.93 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7736 
        1.02         0.99         1.97         1.68         2.37         0.99 
TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7749 TCGA-HC-7818 TCGA-HC-7821 
        2.07         1.48         1.68         2.01         1.48         1.84 
TCGA-HI-7168 TCGA-HI-7171 TCGA-J4-8198 
       65.92        66.02         3.22 

subtype1 subtype2 subtype3 subtype4 
    0.92     1.02     0.30     0.99 
subtype1 subtype2 subtype3 subtype4 
   65.98    54.87    64.08    66.02 
subtype1 subtype2 subtype3 subtype4 
  15.830   19.085   15.965    5.560 
[1] "0.9 - 66.0 (15.8)" "1.0 - 54.9 (19.1)" "0.3 - 64.1 (16.0)"
[4] "1.0 - 66.0 (5.6)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
 [91] "subtype2" "subtype1" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype4"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[109] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype3"
[127] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[133] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[139] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[151] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
 [91] "subtype2" "subtype1" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype4"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[109] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype3"
[127] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[133] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[139] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[151] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [79] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype4" "subtype4" "subtype2" "subtype4"
 [91] "subtype2" "subtype1" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype4"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[109] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype3"
[127] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[133] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[139] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[151] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 34  7
  subtype2 33  4
  subtype3 20  1
  subtype4 35  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34    7
  subtype2   33    4
  subtype3   20    1
  subtype4   35    2
    clus
vv   subtype1 subtype2 subtype3 subtype4
  N0       34       33       20       35
  N1        7        4        1        2
          vv
clus       R0 R1 RX
  subtype1 33 10  0
  subtype2 30  8  1
  subtype3 18  7  0
  subtype4 37  4  1
D5V4, multiclass
D5V5, continuous
D5V6, continuous

Clustering(6) Variable = MIRSEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 31  0
  subtype2 59  0
  subtype3 64  1
subtype1 subtype2 subtype3 
      31       59       65 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5772 TCGA-EJ-5502 TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-5518 
       15.95         8.02        25.91        23.80        27.91        39.29 
TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-7125 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7786 
       41.82        29.92        61.15         6.28         0.30         2.60 
TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 
        1.71         7.13        17.29        54.21        43.99        18.21 
TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6378 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-7519 
       32.65        26.43        21.83        11.70        47.41        15.02 
TCGA-G9-7521 TCGA-G9-7523 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7750 TCGA-HI-7169 
       15.98        10.65         1.02         2.01         1.12        64.08 
TCGA-HI-7170 
       62.43 

$subtype2
TCGA-CH-5738 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5745 
        6.97         1.02        12.99        13.94         1.97         2.99 
TCGA-CH-5746 TCGA-CH-5750 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5762 TCGA-CH-5763 
       24.03        12.99         1.02         2.04        44.02        12.00 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
        1.02        23.01         1.02        24.03         2.04        12.99 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 
        9.96        32.02        33.01         2.99        28.96        19.89 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5503 
       19.53        13.02        17.62        17.49        23.97        17.42 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
       14.70        11.70         5.98        29.82        36.03        24.23 
TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       25.71        34.88        25.74        37.91        27.68        46.13 
TCGA-EJ-5524 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 TCGA-EJ-7321 
       27.42        18.64        13.05        23.80        17.06         7.66 
TCGA-G9-6329 TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6369 
       30.35        54.87        37.61        32.88        28.77        27.98 
TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6384 TCGA-G9-6496 
       26.50        27.81        16.60        12.82        33.34 

$subtype3
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5748 TCGA-CH-5752 TCGA-CH-5761 TCGA-CH-5767 
        2.99        22.06         1.02        30.97         0.92        15.06 
TCGA-CH-5788 TCGA-EJ-5494 TCGA-EJ-5504 TCGA-EJ-5525 TCGA-EJ-7115 TCGA-EJ-7123 
       26.96        12.43         7.53        25.97        26.99        48.99 
TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7781 
        9.70         9.50         9.37         5.75         5.59         5.56 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7789 TCGA-EJ-7793 
        2.10         4.31         5.49         8.48         2.30         1.41 
TCGA-EJ-7794 TCGA-EJ-7797 TCGA-FC-7708 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6351 
        9.34         6.15         1.05        65.92        63.29        39.95 
TCGA-G9-6353 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6364 TCGA-G9-6366 TCGA-G9-6377 
       27.85        33.14        27.02        27.65         3.32        17.03 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7522 TCGA-G9-7525 TCGA-HC-7077 TCGA-HC-7078 
       36.46        22.16        14.83        16.83        65.98         5.33 
TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 
        2.93         2.01         1.02         0.99         1.02         1.97 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 
        1.68         2.37         0.99         2.07         1.74         1.48 
TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7752 TCGA-HC-7818 
        1.68         1.87         2.04         2.01         3.22         1.48 
TCGA-HC-7821 TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7171 TCGA-J4-8198 
        1.84         2.04        65.92        66.02         3.22 

subtype1 subtype2 subtype3 
    0.30     1.02     0.92 
subtype1 subtype2 subtype3 
   64.08    54.87    66.02 
subtype1 subtype2 subtype3 
   18.21    19.53     5.56 
[1] "0.3 - 64.1 (18.2)" "1.0 - 54.9 (19.5)" "0.9 - 66.0 (5.6)" 
  [1] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 22  1
  subtype2 46  9
  subtype3 54  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22    1
  subtype2   46    9
  subtype3   54    4
    clus
vv   subtype1 subtype2 subtype3
  N0       22       46       54
  N1        1        9        4
          vv
clus       R0 R1 RX
  subtype1 22  8  0
  subtype2 46 12  1
  subtype3 50  9  1
D6V4, multiclass
D6V5, continuous
D6V6, continuous

Clustering(7) Variable = MIRSEQ_MATURE_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 44  0
  subtype2 22  0
  subtype3 22  0
  subtype4 21  0
  subtype5 45  1
subtype1 subtype2 subtype3 subtype4 subtype5 
      44       22       22       21       46 
subtype1 subtype2 subtype3 subtype4 subtype5 
       0        0        0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5748 
        2.99         1.02        12.99         1.97         2.99         1.02 
TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5765 
       12.99        30.97         1.02         2.04         0.92        23.01 
TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 TCGA-CH-5790 
        1.02        15.06        24.03         2.04        12.99        32.02 
TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5505 
       33.01         2.99        28.96        17.49        23.97        14.70 
TCGA-EJ-5507 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5518 TCGA-EJ-5519 
        5.98        36.03        24.23        25.91        39.29        37.91 
TCGA-EJ-5521 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-G9-6332 TCGA-G9-6348 TCGA-G9-6362 
       27.68        25.97        18.64        65.92        37.61        27.02 
TCGA-G9-6363 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 
       32.65        27.81        16.60        21.83        12.82        11.70 
TCGA-G9-6496 TCGA-HC-7080 
       33.34         2.01 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5763 TCGA-CH-5789 TCGA-EJ-5495 
        6.97        13.94        24.03        12.00         9.96        19.89 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 
       19.53        13.02        17.62        17.42        11.70        29.82 
TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-G9-6329 
       25.71        34.88        25.74        13.05        23.80        30.35 
TCGA-G9-6336 TCGA-G9-6356 TCGA-G9-6367 TCGA-G9-6370 
       54.87        32.88        28.77        26.50 

$subtype3
TCGA-CH-5739 TCGA-CH-5762 TCGA-CH-5764 TCGA-CH-5788 TCGA-EJ-5494 TCGA-EJ-5504 
       22.06        44.02         1.02        26.96        12.43         7.53 
TCGA-EJ-5514 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5542 TCGA-EJ-7125 TCGA-EJ-7315 
       23.80        46.13        27.42        17.06        61.15         9.50 
TCGA-EJ-7782 TCGA-FC-7708 TCGA-G9-6364 TCGA-G9-6369 TCGA-G9-7521 TCGA-HC-7209 
        2.10         1.05        27.65        27.98        15.98         1.02 
TCGA-HC-7212 TCGA-HC-7821 TCGA-HC-8265 TCGA-J4-8198 
        1.02         1.84         2.04         3.22 

$subtype4
TCGA-CH-5772 TCGA-EJ-5502 TCGA-EJ-5517 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-7331 
       15.95         8.02        27.91        41.82        29.92         0.30 
TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-G9-6365 
        8.48         2.60         1.71         7.13        17.29        26.43 
TCGA-G9-6494 TCGA-G9-7519 TCGA-G9-7522 TCGA-G9-7523 TCGA-HC-7740 TCGA-HC-7750 
       47.41        15.02        14.83        10.65         1.74         1.12 
TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 
       65.92        64.08        62.43 

$subtype5
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7314 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 
       26.99        48.99         9.70         9.37         7.66         5.75 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7789 
        5.59         6.28         5.56         4.31         5.49         2.30 
TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 
        1.41         9.34         6.15        63.29        54.21        43.99 
TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6377 
       18.21        39.95        27.85        33.14         3.32        17.03 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 
       36.46        22.16        16.83         1.02         2.01        65.98 
TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7211 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
        5.33         2.93         0.99         1.97         1.68         2.37 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 
        0.99         2.07         1.48         1.68         1.87         2.04 
TCGA-HC-7749 TCGA-HC-7752 TCGA-HC-7818 TCGA-HI-7171 
        2.01         3.22         1.48        66.02 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.92     6.97     1.02     0.30     0.99 
subtype1 subtype2 subtype3 subtype4 subtype5 
   65.92    54.87    61.15    65.92    66.02 
subtype1 subtype2 subtype3 subtype4 subtype5 
  18.065   21.845   14.205   15.020    5.575 
[1] "0.9 - 65.9 (18.1)" "7.0 - 54.9 (21.8)" "1.0 - 61.1 (14.2)"
[4] "0.3 - 65.9 (15.0)" "1.0 - 66.0 (5.6)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype4" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype5"
 [67] "subtype5" "subtype3" "subtype5" "subtype3" "subtype5" "subtype5"
 [73] "subtype5" "subtype5" "subtype5" "subtype4" "subtype5" "subtype3"
 [79] "subtype5" "subtype5" "subtype4" "subtype4" "subtype4" "subtype5"
 [85] "subtype4" "subtype4" "subtype5" "subtype5" "subtype5" "subtype3"
 [91] "subtype2" "subtype1" "subtype5" "subtype2" "subtype5" "subtype5"
 [97] "subtype5" "subtype1" "subtype5" "subtype5" "subtype2" "subtype5"
[103] "subtype1" "subtype1" "subtype3" "subtype4" "subtype5" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype5" "subtype1"
[115] "subtype1" "subtype1" "subtype4" "subtype1" "subtype5" "subtype5"
[121] "subtype4" "subtype3" "subtype4" "subtype4" "subtype5" "subtype5"
[127] "subtype5" "subtype5" "subtype5" "subtype5" "subtype1" "subtype3"
[133] "subtype5" "subtype3" "subtype5" "subtype5" "subtype5" "subtype5"
[139] "subtype5" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype5" "subtype4" "subtype5" "subtype5" "subtype3" "subtype3"
[151] "subtype4" "subtype4" "subtype4" "subtype5" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype4" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype5"
 [67] "subtype5" "subtype3" "subtype5" "subtype3" "subtype5" "subtype5"
 [73] "subtype5" "subtype5" "subtype5" "subtype4" "subtype5" "subtype3"
 [79] "subtype5" "subtype5" "subtype4" "subtype4" "subtype4" "subtype5"
 [85] "subtype4" "subtype4" "subtype5" "subtype5" "subtype5" "subtype3"
 [91] "subtype2" "subtype1" "subtype5" "subtype2" "subtype5" "subtype5"
 [97] "subtype5" "subtype1" "subtype5" "subtype5" "subtype2" "subtype5"
[103] "subtype1" "subtype1" "subtype3" "subtype4" "subtype5" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype5" "subtype1"
[115] "subtype1" "subtype1" "subtype4" "subtype1" "subtype5" "subtype5"
[121] "subtype4" "subtype3" "subtype4" "subtype4" "subtype5" "subtype5"
[127] "subtype5" "subtype5" "subtype5" "subtype5" "subtype1" "subtype3"
[133] "subtype5" "subtype3" "subtype5" "subtype5" "subtype5" "subtype5"
[139] "subtype5" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype5" "subtype4" "subtype5" "subtype5" "subtype3" "subtype3"
[151] "subtype4" "subtype4" "subtype4" "subtype5" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype4" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype5"
 [67] "subtype5" "subtype3" "subtype5" "subtype3" "subtype5" "subtype5"
 [73] "subtype5" "subtype5" "subtype5" "subtype4" "subtype5" "subtype3"
 [79] "subtype5" "subtype5" "subtype4" "subtype4" "subtype4" "subtype5"
 [85] "subtype4" "subtype4" "subtype5" "subtype5" "subtype5" "subtype3"
 [91] "subtype2" "subtype1" "subtype5" "subtype2" "subtype5" "subtype5"
 [97] "subtype5" "subtype1" "subtype5" "subtype5" "subtype2" "subtype5"
[103] "subtype1" "subtype1" "subtype3" "subtype4" "subtype5" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype5" "subtype1"
[115] "subtype1" "subtype1" "subtype4" "subtype1" "subtype5" "subtype5"
[121] "subtype4" "subtype3" "subtype4" "subtype4" "subtype5" "subtype5"
[127] "subtype5" "subtype5" "subtype5" "subtype5" "subtype1" "subtype3"
[133] "subtype5" "subtype3" "subtype5" "subtype5" "subtype5" "subtype5"
[139] "subtype5" "subtype4" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype5" "subtype4" "subtype5" "subtype5" "subtype3" "subtype3"
[151] "subtype4" "subtype4" "subtype4" "subtype5" "subtype3"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 33  7
  subtype2 18  2
  subtype3 17  4
  subtype4 19  0
  subtype5 35  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33    7
  subtype2   18    2
  subtype3   17    4
  subtype4   19    0
  subtype5   35    1
          vv
clus       R0 R1 RX
  subtype1 34 10  0
  subtype2 16  5  1
  subtype3 16  2  1
  subtype4 16  5  0
  subtype5 36  7  0
D7V4, multiclass
D7V5, continuous
D7V6, continuous

Clustering(8) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype2 81  0
  subtype3 71  1
subtype2 subtype3 
      81       72 
subtype2 subtype3 
       0        1 
$subtype2
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.94 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 
        1.97         2.99        24.03         1.02        12.99        30.97 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        12.99 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       15.95        26.96         9.96        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
       28.96        19.89        19.53        13.02        17.62        17.49 
TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 
       23.97         8.02        17.42        14.70        11.70         5.98 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 
       29.82        36.03        24.23        25.91        25.71        23.80 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       34.88        25.74        27.91        39.29        37.91        27.68 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       46.13        27.42        25.97        18.64        13.05        41.82 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6336 
       23.80        29.92        17.06        30.35        65.92        54.87 
TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 
       37.61        32.88        27.02        32.65        27.65        26.43 
TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6378 TCGA-G9-6384 
       28.77        26.50        27.81        16.60        21.83        12.82 
TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 
       11.70        47.41        33.34 

$subtype3
TCGA-EJ-5504 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 
        7.53        26.99        48.99        61.15         9.70         9.50 
TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 
        9.37         7.66         5.75         5.59         6.28         0.30 
TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 
        5.56         2.10         4.31         5.49         8.48         2.60 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 
        1.71         2.30         7.13        17.29         1.41         9.34 
TCGA-EJ-7797 TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 
        6.15         1.05        63.29        54.21        43.99        18.21 
TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6377 
       39.95        27.85        33.14         3.32        27.98        17.03 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       36.46        22.16        15.02        15.98        14.83        10.65 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       16.83         1.02         2.01        65.98         5.33         2.93 
TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 
        2.01         1.02         0.99         1.02         1.97         1.68 
TCGA-HC-7231 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 
        2.37         0.99         2.07         1.48         1.68         1.87 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 
        2.04         2.01         1.12         3.22         1.48         1.84 
TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 
        2.04        65.92        64.08        62.43        66.02         3.22 

subtype2 subtype3 
    0.92     0.30 
subtype2 subtype3 
   65.92    66.02 
subtype2 subtype3 
   23.80     5.67 
[1] "0.9 - 65.9 (23.8)" "0.3 - 66.0 (5.7)" 
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3"
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype2 65 10
  subtype3 55  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype2   65   10
  subtype3   55    4
    clus
vv   subtype2 subtype3
  N0       65       55
  N1       10        4
          vv
clus       R0 R1 RX
  subtype2 61 19  1
  subtype3 55 10  1
D8V4, multiclass
D8V5, continuous
D8V6, continuous
                       V1.D                          V2 
            "Time to Death"                       "AGE" 
                         V3                          V4 
    "LYMPH.NODE.METASTASIS" "COMPLETENESS.OF.RESECTION" 
                         V5                          V6 
    "NUMBER.OF.LYMPH.NODES"           "TUMOR.STAGECODE" 
> q(save="no")
